adss2 (adss,LOC107666526,LOC101478205,LOC102202649,LOC100691320)


Basic Information

Item Value
gene id adss2
gene name adss,LOC107666526,LOC101478205,LOC102202649,LOC100691320
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20573244 ~ 20602048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937214.2
AGCagtgtgcggtttgggacgcagcccaaGCAGGGGGCGTGTCTGGGATGTAATACGCGGCTGTGTCGTGAAGACAGTGTACAGTAAGGTGGCTTCGGCGGAGACGCATCGGGAAGTGAATAAGTGAGCGTTTAGGGCGCACAGGGACACTCGGTCATGGCAGATAACGGGAGCACGGAGGCGCGGACTGCTCCGAGCCTCGGCAACAAAGTGACCGTTGTGCTTGGAGCCCAGTGGGGCGATGAAGGCAAGGGCAAAGTGGTGGACCTGCTGGCCCAGGACGCCGACATGGTCTGCAGATGTCAGGGAGGCAACAACGCAGGACACACAGTTGTGGTGGATTCTGTAGAGTATGACTTTCACCTTTTACCTAGTGGCATTATCAACCCTAATGTCACAGCCTTTATTGGTAATGGCGTAGTGATTCACCTTCCCGGCCTCTTCGAGGAGGCTGAGAAAAATGAGCGGAAGGGTAAAGGTCTGGAGGGCTGGGAGAAGCGGCTCGTCATTTCTGACCGCGCCCATATTGTGTTTGATTTCCATCAAGCTGTGGATGGAGTTCAAGAACAGGAGAGGCAGCAGCAAGCTGGCAAAAATTTAGGAACAACGAAAAAGGGTATCGGCCCTGTCTACTCAGCAAAGGCTGCCAGGAGTGGCCTCAGAATATGTGACCTTTTGTCTGACTTTGAGCAATTCACAGAGAGGTATAAAAACTTGGCCTCACAGTACAAGTCTATGTACCCGTCACTGGAGATAGATATTGATGGGGAGCTAGAGAAACTTAAGGCATATGTGGAACGAATAAAACCCATGGTAAGAGATGGCGTGTTCTTCATGTACGAGGCTCTGCACGGTGCATCTAAAAAGATACTGGTGGAAGGTGCCAATGCTGCCCTGCTGGACATTGACTTTGGAACGTACCCTTTTGTAACCTCGTCCAACTGTACAGTGGGTGGGGTGTGTACGGGCCTGGGCATGCCACCTCAGAATGTGGGGGAGGTCTATGGCGTTGTCAAGGCCTACACCACCCGAGTGGGCATCGGAGCATTCCCGTCTGAACAGAATAATGAAATTGGAGAGCTGCTTCAGACAAGAGGGAAGGAGGTGGGCGTAACCACAGGCCGCAAGAGGAGATGCGGCTGGCTTGATCTGGTGCTTGTCAAATATGCCCACATGATTAATGGCTTCACTGCATTGGCTCTAACCAAATTAGACATCCTGGACGTCTTCTCCGAAATCAAAGTTGGTGTGGGGTATAAAGTGGACAATGAGTTCATACCGTATTTCCCAGCAAATCAGGAGGTGTTACATAAGGTCGAGGTCCAGTATGAGACTTTGCCTGGCTGGAACAGCGACACCTCAGCTGCTAGGACCTTCGAGGAGCTTCCGGAAAATGCACAGAAATACGTTCGTTTCATTGAGGAGTACCTTAAGGTGCCTGTGAAATGGATCGGTGTTGGCAAGTCAAGAGAGTCAATGATCCAGCTGTTTTAAGGGGCTGTTTGGCTGTGTGGTACTATCCAAGCCCTCTGACTCAGCACAATGCTCTGGGCTTATCAGTGGGCTTACCTGATGGAGTCAGAGAAAGGATCCAGCCTCTCACCTCTCCACTCACTGCaatttctcataaaaaaaaaaaacaccaacatggaTTCTTTCTTCTTCACTATATGATACTCTGCTCAAGAACTATCTCATAGTTTTCACAAGTTTCTTTGGAGGTCACTGTAGGACGCCATAGTGGAAAGTCCGTTGGTCTTTAGGGAACAAACTCTTTAACCTCTCATGAGCAACTGTTGGTCATTTTAAAGTAGGATTTCTGAAATGGACCTTTATCTATCCTTATGGGTCTCCTGTGTCTTTTGTTCTTCGTGTCTAGTTTGCTTTTAATGAGTATTTAGAGCAGCATCACGTCTTTCAACTGAACATATATGCAGACTGAGTGGTTAATATAGATTCAAAACCTGAATGTAGGCCCTGATTTATACtagtataattaatttatttgtagatTTAGTGTCTCAAGGAGGCAAAACAACTAACGTTGATTAGTTTTAACAGAGTTTTGAACATTTTCTTAACCAAATGCTAAGTAATTTAAGATTTATATTATTGTGCCACTGGCCAGTTAGCAGTATTTCAGTTTGGCCTCAATTTTGATTACCCTATTGGAGTGTCTTTGACATGGCTATAGCCCTTTTTTCATTATTCCCATTCAgacaaatgtaatatgatgtaaatgtaaatgtacacatttcTCTGTGAAACACTATTTGTCAATGTTCACGTATAGTTGACAGAGCATACATCCTATTTGTCTTTGCACTGATGTGTACTTCCTGcatttaagtatttaatttgAAGTTAGCCACCCTAATCAGAggagacacacatacatacacacacacacacacacacacacaaagttgtTTAGTAGTACCGaatgataatttttttcactttttcaagTATATGTTTactattaaaatgtgtgatattgacatTTACCCATTTGTGGAAAGTGTAAGCATGGAAATGTAAACCTATTTACTTCTTTCTAACTTTAAACTTGTAGTGTTGCACATGTATACCACAACCCAGACAGGTTTGTCAGTTAGTTGGCACTTGTCAGGCCAACTTCATTCATGActtgaatgtatttttaatattgagACACACCTAGTTCAACTCTCAGGATATTCTGGTGGttataactgtatattttaattctaatcTGTTAATTGTTGTATGGTTTGACTGCTTGTCTCTTGTCACTTTTTGGGGTGTgagtaaatatttaacaaattattctTCAATCTACAAactatatattttgttttgtttttttgtttttttttttgccaaaatgtAGCGATACTGCATTGCATAACTCTAAATCAGcccatgattttttgcattttaatttaatttagccCCACAGCATTTTGGAGTACCATGGAGTAGAAAGTACTTTAGAAAAAAGACTCTCGTGGTCagttttgtaattgtaattgagTATGTGTTCAGACACCATGTAGTGTTCTTCTGGAAAATGAGAAGTTGATTAAGATTGTGGCCAGTAAAAGAATTTTGGATAACACTTCCTATGCAGCTTGATTTTATAATAGAGTAAATGTATTGTTAGTTTTGTGTGTGCCACAATTCATTATGTGTGGAATAAGACATTGCAACTGctcaaaaatatattaacttGCTCCTGAAGAACACAACTGCAAGAGCATTAAATGGCTTGGGAGTCCAGGAGAGCATGATTGGCCCTGCTCTATGGGTGTGTAATACACATTTGCAGTGTATTATGGATACAAGCTTTTAGGAAGTGTTATTGAATTGTAGTTCATGTTCGGGGtcgccttttctttttttagtccCTGTTATAACACTGGGCTGCATTTGGACATAGAACTGAATGTTTCATAGAACTGaatgtttcatcatttttgctGCTCATCCCAGTAAGTCTCTAGGTGCTTACTGTTGATTATCCCTTTAAATTAACTATAATTCACTGTAATTTAAATCTGTAGATGCACATATTCTTGCTCTCATTATGAACCTAGAAATAATAGCTCCTATTGtagctttctctttctctctgtcatgtttatttatatgctCTGATACGCATCTTTCACACTGCCTTCATCAGTGAGGAAAGTGTGCCTTGACAATAAGTTCTTTTAAGTCAGAACCAGGTACATAATATGTGGATGGTTAGAAATTGAGATATTTAAATCAGATAGGTGTGTTtaccaataaaatattttaatacacactctta

Function

symbol description
adss Enables adenylosuccinate synthase activity. Involved in several processes, including IMP metabolic process; aspartate metabolic process; and cellular response to electrical stimulus. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Biomarker of sarcoma. Orthologous to human ADSS2 (adenylosuccinate synthase 2).

NR:

description
adenylosuccinate synthetase isozyme 2

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937214.2 True 3799 mRNA 0.42 13 20573244 20602048

Neighbor

gene id symbol gene type direction distance location
dctn1b dctn1,LOC108263710 coding upstream 20650 20522100 ~ 20552594 (+)
LOC113543984 cmlo,LOC103037014,LOC108421773 coding upstream 51970 20517508 ~ 20521274 (+)
slc39a8 LOC108263549 coding upstream 57608 20507217 ~ 20515636 (+)
manba manba coding upstream 66813 20497593 ~ 20506431 (+)
ube2d3 ube2d3,ube2d2,ube2d2l,UBE2D2,LOC108263550,LOC107585246,LOC106611705,LOC105029919,LOC103039786 coding upstream 76529 20485920 ~ 20496715 (+)
akt3a akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding downstream 46836 20648884 ~ 20745327 (+)
cep170aa cep170 coding downstream 200322 20802370 ~ 20855702 (+)
abcg8 abcg8,LOC107666472 coding downstream 275838 20877886 ~ 20885712 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding downstream 384841 20986889 ~ 20996378 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding downstream 400321 21002369 ~ 21010590 (+)
G49853 NA non-coding upstream 49195 20523816 ~ 20524049 (+)
G49643 NA non-coding upstream 382100 20155901 ~ 20191144 (+)
G49630 NA non-coding upstream 390051 20121048 ~ 20183193 (+)
G49518 NA non-coding upstream 573558 19972587 ~ 19999686 (+)
G49522 NA non-coding upstream 618649 19912821 ~ 19954595 (+)
G49857 NA non-coding downstream 17890 20619938 ~ 20716297 (+)
G50140 NA non-coding downstream 348522 20950570 ~ 20950991 (+)
G50145 NA non-coding downstream 361214 20963262 ~ 21043534 (+)
G50284 NA non-coding downstream 577558 21179606 ~ 21179811 (+)
G50297 NA non-coding downstream 596229 21198277 ~ 21198508 (+)
pprc1 LOC108263826,LOC108421584 other upstream 180643 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1217146 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1311156 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1355968 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 1536600 19026968 ~ 19036644 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 423685 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1418274 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1883262 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 2182280 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 2309096 22911144 ~ 22913552 (+)

Expression


Co-expression Network