dld (dll1,dld,LOC107717858,LOC107702673,LOC107660228)


Basic Information

Item Value
gene id dld
gene name dll1,dld,LOC107717858,LOC107702673,LOC107660228
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22981602 ~ 22986797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937324.2
CGGACTGGGACAtcagacactcacacactcacacactccttctctctctccaatgGAATCACGAGCGTCGGAGTAAACGCGTTTGGAAAGCCTACAAATCAGCGCAAAGTAAACAGTCGCGACCTGCTGCCTCTGCTGCAGCTTTGTGTGGAAAGTGCAAGTGATCCGGACGCACTGACAACTTGGAGTtatcactctttttttctgtgactTTTGGGATTtacttgtctgttttttttttgttttttgttttttgcaagaCATGAcctgtagaagaagaagataaagCGAATTAAAGAGTGCATCAACCCTCTGGCTGAAGATTTCACCTCTTCAGCGTGTGGTAGTTGTAGGTTACATGACTTCTTGAGCGAGCTCACCCGTGGACGTGTAACATCTCCCTGAAGATCTTCACCACCATGGGGCGACTCATGATAGCTGCCATCCTTTGTGCCATGCTAAACCAGattttATGCTCTGGGGTTTTTGAGTTGAAGTTGCAAGAGTTTCTCAATAAGAAAGGAATAACAGCCAACTCTAACTGCTGTAAAGGAGGATCCTCTTCAGCCATCCAGCAGTGCGAATGCAAAACCTTTTTCAGGATTTGCCTGAAGCATTACCAGGCTAACGTGTCCCCAGAGCCTCCGTGCACGTATGGAGGAATTACTACTCCAGTTCTCGGATCAAACTCATTTCAAGTTCCTGAAACTCTTTCAGACAGCACCTTCACCAACCCTGTTCGCTTCCCTTTTGGATTTACGTGGCCGGGCACGTTTTCACTAATTATTGAGGCACTGCATACAGAGTCTACTGAGGATTTATCAACCGAAAACCCAGAACGTCTGATCAGTCGCATGACCACCCAGAGGCACCTGACGGTCGGAGAAGAATGGTCCCAGGATCTCCAGGTGGCTGGGAGAACCGAGCTGAAGTACGCCTACAGATTCGTGTGTGATGAGCATTACTATGGAGACGGCTGCTCGGTCTTCTGCCGGCCGCGAGACGACGCCTTCGGCCACTTCACGTGCGGAGAGCGCGGAGAGATCATCTGTAACTCCGGGTGGAAAGGCCAGTACTGCACAGAGCCAATCTGTCTCCCGGGGTGTGATGAGGAGCATGGATTTTGTGACAAACCTGGTGAATGCAAATGCAGAGTGGGCTTCAGTGGGAAATACTGTGATGACTGTATCCGCTACCCTGGTTGCTTACATGGAACCTGCCAGCAACCATGGCAGTGCAACTGTCAAGAGGGCTGGGGTGGCCTCTTCTGCAACCAAGATCTTAATTACTGCACACACCACAAACCATGCCAGAATGGAGCCACTTGCACTAACACTGGTCAAGGCAGCTACACATGCAGCTGCAAGCCTGGTTTCACCGGGGCGAGCTGTGAGATTGAGGTTAACGAGTGCTCTGACAGCCCCTGCAGAAATGGAGGAAGCTGCACTGATCTTGAGAACACATATAGCTGCACCTGCCCTCCTGGCTTCTATGGAAGAAACTGTGAGCTGAGTGCCATGACTTGTGCTGATGGCCCCTGCCTCAATGGTGGACGGTGTGCTGACAATCCTGATGGAGGATACTTCTGTCAGTGTCTCATGGGCTACGCCGGCTTTAATTGTGAAAAGAAGATTGATCATTGTAGTTCAAATCCATGCTCAAATGGTGCCCAGTGTCTAGACCTTGTGGACTCCTATCTCTGCCAGTGTCCAGAGGGTTTTACAGGCACACACTGTGATGACAATATTGATGAGTGTGCTGCCTACCCCTGTCAGAATGGTGGAACATGTCAAGACGGAGTCAACGACTACACCTGTACCTGCCCACCTGGATACACTGGCAAGAACTGCAGCCTGCCTGTCAATAAGTGTGTACATAACCCTTGCCACAATGGAGCTACTTGTTATGAAAGGGATAACCGCTATGTGTGTGCCTGCATTCCTGGGTACGGAGGACGTAACTGCCAATTCTTGCTCCCTGAAAACCCTCAAGGACAGCCTGTTGTAGAGGGAGCCGATAAAAGGTACTCTGACGATGAGGAGGACAACGTATTTCCATGGACAGCAGTCTGTGCTGGGATTATTTTGGTGCTTTTGCTCCTGCTTGGGTGCGCTCTTCTGGTCGTGTACATCCGCATAAAACTGCAGCAGAGAAGCCAGCAAGCCGACAGTCACATTGAAAGTGAGACCATGAACAACTTGACCAACAACTGCAGTCGAGAGAAGGACCTGAGCGTCAGCATTATAGGCACTACGCAGGTGAAGAATACCAACAAGAAGGTGGACTTTCAGAGTGACGCCACAGGTGTAGAAAAGAAAGGTTACAAGTCTCGCTATTCATTAGTGGATTACAATCTTGTTCATGAGCTTAAGCAGGAGGACTTCGGGAAAGAGGACTTGGAGAAAAACGATGTAAGATGCGAAGCTCTTGACTCTGacacagaagaaaaacacagaaaacatttaagaaGTGAGACATCAGAGAAAAGTCCAGAAGCTGCATGCAAAGACACAAAGTACCAGTCTGTCTTTGTAATATCAGATGAAAAGGATGAATGTATTATTGCAACTGAGGTATAATGCCACAACAGAGCTGTAGCTCGTCTTGCTCTACAGGAGGTTTTACTCCAGTATATGCTGCTCAAACCAGAGGGAAGGTTTCCTTCTTATGACTGCTGCTGTGGGTCTTATGTTCATGGTGAAGTTCAGAATGAGCTGGTTCTCAACTGAAGTAAGCACAGTGACTGCAGAAAAAGGATGTTGAGCCATACTGGCTCGCACTCTCAAAGTTTATTTCCCAGGAATGTGTCAGATGGACTTGTTGCACTTCCtgtagggatttttttttacctcattgCACTATGGAGGgttgcttttataaaaaaaaatgtatttaacattcAAACATAATTACTGCATATAAGTATGCACTGACTGCAGTGTCTATCTCTGACCCGTTACACAGGTCAGGAGAGGAAAAACACCGCCAACAAAACTGTTCAGTTACTGATATGATTTTtaagttgtaatatttttttatttaaatgctatttGTGATTAATTTGCTTTGGGGTTTTTGTGAAGTTAACGCAGATataatttaatctttttctcattttgcaaatttgtatattgtatataaggCACTTCGGGTCATAGTGACTGTTTTCCAACAGTAATGTATTTAATTGTGTTGTTAAAACTTACAGGAATTGTTTTATAAGTGTTGTTCATGAAGAAAATCACCttaatatttttccaaataaatcCTGTATGAAATATTTCCAAATGA

Function

symbol description
dld Enables PDZ domain binding activity. Acts upstream of or within several processes, including animal organ development; lateral inhibition; and regulation of hematopoietic stem cell differentiation. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including gut; mesoderm; nervous system; presumptive mesoderm; and tail bud. Orthologous to human DLL1 (delta like canonical Notch ligand 1).
dll1 Enables Notch binding activity and Tat protein binding activity. Involved in Notch signaling pathway; negative regulation of interleukin-10 production; and neuronal stem cell population maintenance. Predicted to be located in adherens junction; apical plasma membrane; and membrane raft. Predicted to be active in plasma membrane. Biomarker of temporal arteritis.

NR:

description
delta-like protein D

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0046331 lateral inhibition biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030165 PDZ domain binding molecular_function

KEGG:

id description
K06051 DLL; delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937324.2 True 3291 mRNA 0.46 11 22981602 22986797

Neighbor

gene id symbol gene type direction distance location
si:zfos-1056e6.1 LOC108263310 coding upstream 54052 22924521 ~ 22927550 (+)
LOC113540824 syndig1,LOC107717853 coding upstream 90733 22870890 ~ 22890869 (+)
mea1 mea1 coding upstream 235798 22742727 ~ 22745804 (+)
dlk2 dlk2 coding upstream 260714 22696395 ~ 22720888 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding upstream 359909 22608479 ~ 22621693 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding downstream 65431 23052228 ~ 23069644 (+)
spred2b spred2,LOC108263653 coding downstream 84511 23071308 ~ 23101134 (+)
LOC113545030 NA coding downstream 127388 23114185 ~ 23115039 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding downstream 233324 23220121 ~ 23276316 (+)
si:dkey-78p8.1 NA coding downstream 441220 23428017 ~ 23450991 (+)
G51358 NA non-coding upstream 22982 22958400 ~ 22958620 (+)
LOC117596907 NA non-coding upstream 244935 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 445165 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 532093 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 644558 22266697 ~ 22337044 (+)
G51422 NA non-coding downstream 83524 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 86159 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 87933 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 220318 23207115 ~ 23275341 (+)
G51511 NA non-coding downstream 291126 23277923 ~ 23361488 (+)
LOC113540861 LOC108263311 other upstream 68050 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 195097 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 428850 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 957791 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1862638 21025733 ~ 21118964 (+)
G51562 NA other downstream 467631 23454428 ~ 23455549 (+)
G51749 NA other downstream 710235 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 806883 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 1068357 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1363387 24350184 ~ 24402454 (+)

Expression


Co-expression Network