ppp2r5d (ppp2r5d,LOC106605890)


Basic Information

Item Value
gene id ppp2r5d
gene name ppp2r5d,LOC106605890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22746734 ~ 22771957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937354.2
GCCTTGTGGCCACGCCCCTGCAGGTAAATATCACAGAGAGGGTGATAACGCACCGGGCTCGACTCAGCCATTCAGCATAGTCTAAAAACGAGTCCAATAGTGAAGTGGTGTCGGCTTGTCTCCAGGCCGTGTCGTCTCTCACGGACCAATCAGCTTCCAGCGGGCCTGAGAGCGCAGCGCGAGccctgactgactgactgagcgCTCGAGCGTGCGGGGAGATTCTGTCACTGAGGCACCACCAAACAGCGCATCCGCAAAATGCCGAATAAAacgaaaaaagaaaagGAATCGCCGAAATCTGCGAAAGCcagcagtaaaaacagtaaCGTCAACGCTGGAAAGGATACTGGGACTGAAAATTCAGACGAGgCGCAGCAGCAGTCAGCCAGCAAGCGTCCTAGCAACAGCACTCCACCTCCAACTCAGCTCAACAAAATCAAGTACTCAGGTGGTCCACAGATTGTCAAGAAAGAGCGCCGACAGAGCTCTTCTCGCTTTAACCTCAGCAAGAACCGTGAGCTACAGAAGCTTCCTGCACTTAAAGATGCCCCACCTATCGACAGGGAGGAGTTGTTTGTTCAGAAGCTGCGCCAGTGCTGTGTGCTGTTTGACTTCGTGACGGATCCTCTCAGTGATCTGAAGTACAAGGAAGTGAAGCGTGCCGGACTGAATGAGATGGTggaatacatcacacacaatcGTGATGTAGTTACTGAATGCATCTATCCCGAGGCTGTCATTATGTTTTCAGTGAACCTATTTAGGACCCTGCCTCCTTCTTCTAATCCTACTGGAGCAGAATTTGATCCTGAGGAGGATGAGCCTACACTGGAGGCAGCTTGGCCCCACCTGCAGCTGGTGTATGAATTCTTCTTGCGCTTCTTGGAGTCACCTGATTTCCAGCCTAATATCGCCAAAAAATACATTGACCAAAAGTTTGTATTGTCTCTCCTGGAGCTATTTGACAGTGAAGACCCCAGAGAGCGGGACTTCTTGAAAACAATTCTACACAGGATTTATGGCAAGTTCCTGGGACTTAGAGCATACATCCGTCGACAGATCAACAACATATTCTATAGGTTTATATATGAAACAGAGCATCACAATGGCATTGCAGAGCTCTTGGAAATTCTAGGAAGTATAATTAATGGCTTTGCCCTGCCATTGAAAGAGGAGCACAAAATGTTCCTGATTCGAGTGCTCCTGCCACTGCACAAGGTCAAGTCACTCAGTGTCTATCACCCTCAgCTGGCATACTGTGTTGTTCAGTTTTTGGAAAAAGACAGCAGTCTCACTGAACCAGTTATAATGGGTCTGTTGAAGTTCTGGCCCAAGACCCATAGTCCTAAAGAGGTGATGTTCTTGAACGAGTTGGAGGAAATCCTGGATGTCATTGAGCCTTCAGAGTTTGTAAAAGTTATGGAGCCTCTGTTTAGACAGCTAGCCAAGTGTGTATCAAGTCCGCACTTTCAGGTTGCTGAAAGGGCACTGTATTACTGGAACAACGAGTACATCATGAGTCTGATCAGTGACAATGCTGCCAAAATCCTTCCCATCATGTTCCCTGCTCTTTATAAGAACTCCAAAAGTCATTGGAACAAGACAATCCATGGGCTTATTTACAATGCTCTGAAGCTCTTTATGGAGATGAACCAGAAGCTGTTTGATGATTGCACTCAGCAGTACAAAGCGGAGAAGCAAAAGGAGAAGTACAAACTAAAGGAGCGGGAAGAGATCTGGCACAAGATTGAACAGCTTGCTAAACAAAATCCTCAGatTACAAAGATCCATCCTAGTCTCCGACCTGGTCTGCCTCAGGATGCGtatataatgtataatgaaaACCAAGGGATGCCACACTATTCCATGGAGACAGAGACTCCCACTGCTGAGGACATCCAGCTGCTGAAGAAGACTGTGGAATCTGAGGCTTCACAGGGAATGAAGGATATAAAGAAGGACAAGGTGCTGATGCGACGGAAGTCAGAGCTGCCGCAGGATGTGTACACTATAAAGGCTCTGGAGGCCCACAAGCGGTCAGAAGAGTACCTGACTGCTAATCAGGAAGCCCTCTGACTGAGGAACACCACAACCAGTCACCTGCACCACGCCTAGACTGTCCCACTCGTATTTGTCCAGACATGTCGCCTGCTGTA
>XM_026937355.2
AACGCACCGGGCTCGACTCAGCCATTCAGCATAGTCTGTAAGTTACAACTAACAGAGCGCGTAACTGGAAAGCGGTATCGTTTCTTGTGCTGGCAAATTTAAAACAGCTCGTATAAAGCACTTGTGGCCAACATCATTTGCGGTGTTCCTCCCTTTTTAATTCAGAAAAACGAGTCCAATAGTGAAGTGGTGTCGGCTTGTCTCCAGGCCGTGTCGTCTCTCACGGACCAATCAGCTTCCAGCGGGCCTGAGAGCGCAGCGCGAGccctgactgactgactgagcgCTCGAGCGTGCGGGGAGATTCTGTCACTGAGGCACCACCAAACAGCGCATCCGCAAAATGCCGAATAAAacgaaaaaagaaaagGAATCGCCGAAATCTGCGAAAGCcagcagtaaaaacagtaaCGTCAACGCTGGAAAGGATACTGGGACTGAAAATTCAGACGAGgCGCAGCAGCAGTCAGCCAGCAAGCGTCCTAGCAACAGCACTCCACCTCCAACTCAGCTCAACAAAATCAAGTACTCAGGTGGTCCACAGATTGTCAAGAAAGAGCGCCGACAGAGCTCTTCTCGCTTTAACCTCAGCAAGAACCGTGAGCTACAGAAGCTTCCTGCACTTAAAGATGCCCCACCTATCGACAGGGAGGAGTTGTTTGTTCAGAAGCTGCGCCAGTGCTGTGTGCTGTTTGACTTCGTGACGGATCCTCTCAGTGATCTGAAGTACAAGGAAGTGAAGCGTGCCGGACTGAATGAGATGGTggaatacatcacacacaatcGTGATGTAGTTACTGAATGCATCTATCCCGAGGCTGTCATTATGTTTTCAGTGAACCTATTTAGGACCCTGCCTCCTTCTTCTAATCCTACTGGAGCAGAATTTGATCCTGAGGAGGATGAGCCTACACTGGAGGCAGCTTGGCCCCACCTGCAGCTGGTGTATGAATTCTTCTTGCGCTTCTTGGAGTCACCTGATTTCCAGCCTAATATCGCCAAAAAATACATTGACCAAAAGTTTGTATTGTCTCTCCTGGAGCTATTTGACAGTGAAGACCCCAGAGAGCGGGACTTCTTGAAAACAATTCTACACAGGATTTATGGCAAGTTCCTGGGACTTAGAGCATACATCCGTCGACAGATCAACAACATATTCTATAGGTTTATATATGAAACAGAGCATCACAATGGCATTGCAGAGCTCTTGGAAATTCTAGGAAGTATAATTAATGGCTTTGCCCTGCCATTGAAAGAGGAGCACAAAATGTTCCTGATTCGAGTGCTCCTGCCACTGCACAAGGTCAAGTCACTCAGTGTCTATCACCCTCAgCTGGCATACTGTGTTGTTCAGTTTTTGGAAAAAGACAGCAGTCTCACTGAACCAGTTATAATGGGTCTGTTGAAGTTCTGGCCCAAGACCCATAGTCCTAAAGAGGTGATGTTCTTGAACGAGTTGGAGGAAATCCTGGATGTCATTGAGCCTTCAGAGTTTGTAAAAGTTATGGAGCCTCTGTTTAGACAGCTAGCCAAGTGTGTATCAAGTCCGCACTTTCAGGTTGCTGAAAGGGCACTGTATTACTGGAACAACGAGTACATCATGAGTCTGATCAGTGACAATGCTGCCAAAATCCTTCCCATCATGTTCCCTGCTCTTTATAAGAACTCCAAAAGTCATTGGAACAAGACAATCCATGGGCTTATTTACAATGCTCTGAAGCTCTTTATGGAGATGAACCAGAAGCTGTTTGATGATTGCACTCAGCAGTACAAAGCGGAGAAGCAAAAGGAGAAGTACAAACTAAAGGAGCGGGAAGAGATCTGGCACAAGATTGAACAGCTTGCTAAACAAAATCCTCAGatTACAAAGATCCATCCTAGTCTCCGACCTGGTCTGCCTCAGGATGCGtatataatgtataatgaaaACCAAGGGATGCCACACTATTCCATGGAGACAGAGACTCCCACTGCTGAGGACATCCAGCTGCTGAAGAAGACTGTGGAATCTGAGGCTTCACAGGGAATGAAGGATATAAAGAAGGACAAGGTGCTGATGCGACGGAAGTCAGAGCTGCCGCAGGATGTGTACACTATAAAGGCTCTGGAGGCCCACAAGCGGTCAGAAGAGTACCTGACTGCTAATCAGGAAGCCCTCTGACTGAGGAACACCACAACCAGTCACCTGCACCACGCCTAGACTGTCCCACTCGTATTTGTCCAGACATGTCGCCTGCTGTATACTCCCCCTCCTTTCCTCCTTTTGTCTCTGCCTCTTTCCTTCTTCACTTCCTCTTGGAGAGGCCTTTCTGCAAAATCCTGGCTAGCACGCAATCATGAAGAgctcccattctctctctcttgctcgctctctctcacttgcGCTTTCTCTTCTTCCCTCCTTGCCGCTTCCATTTCAATGGCAACTCCAAACCACAAAAAACAATCATGAAAAACAGTATGTGAATTGTACTacaacaatttatttttcaaaaaaatgtttcctCTTTATTGtggtattttttaatgttctatATTTTGTTGCAATTTTTCCAAATTTTACTGTCTTCACCTCTTTTGCCCTGCTTTTAAACTGTTGTTTTCTCacttttcccttcactggccCAGTACATCCATACTCACTTAGGCAATCGACTGCGTTGTCTAAAAGATAATAAGCAACCCATTAGTGACACTGACAGTGCATTTGCTTGAGCCAGATTTAGGGACTGGGGAGTGTAGGTCTTTATTTCTGGATCATGTTGCCTTGCTCTTGTGGGACAGTGTGATGCATATGAATGTTAACTTGCTATCAAAATATACCACAGGCAGCCTACAGGATCTGTAGAGTTGTTTGTTCCCTGCAGAACCTAGCTGTTGATAATTCTTGGTGTCCTCATGCAATAAGTTCAAAGTAAAATATAACTGTGTAAAAGTACATGAAAAATACCTCAAGACAAGGCATCATGCTTCCTTCTTAGATGTCGTAAGTTCAAGCTTTTGTCATCAGCTCAGCAACTGACATAAGAATTAGCCAGGTTTATTGGTCCAGATGCATGTGCTAGTGGCAGTCTGAAGTGTCTGAACTGAAAGCCTTGCTGTGCAGTAGCCAAATGGTGGAATCgctatgattttatttatgccTGTAGTCACATTTATACTGTCAACAGGATTTAATGTTTAGCCTGTTTCCTGCCTTACTGGTGAACTGAGAACACAACACTGTAAGGTGCTGAATGAAATTGCTGACCTCTTAAAACACCAGCAGACCATTCCATATTTCATTATCATTCTACAAAAGAATGCTGTATCTCAATGTTCTGTACCTCAAAAATGTGTCTATAAGTTACCAGTCATTACACATGGTTCCATGATGTGTGGTTACATATttgtaatgttttcatttttttaattgattaacaATTCCCTTTAAACAGCTATGTTTATCTCATA

Function

symbol description
ppp2r5d Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937354.2 False 2159 mRNA 0.48 18 22747946 22771957
XM_026937355.2 True 3453 mRNA 0.44 17 22746734 22771911

Neighbor

gene id symbol gene type direction distance location
LOC113540936 dnph1 coding downstream 4259 22738208 ~ 22742475 (-)
LOC113540869 dnph1 coding downstream 17427 22726906 ~ 22729307 (-)
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 57429 22626634 ~ 22689305 (-)
ncoa4 ncoa4 coding downstream 148535 22589052 ~ 22598199 (-)
prkn park2 coding downstream 322323 22317419 ~ 22424411 (-)
si:dkeyp-121d4.3 LOC108263047 coding upstream 19226 22791183 ~ 22814948 (-)
LOC113540882 cul9 coding upstream 54273 22826230 ~ 22866443 (-)
apmap apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784 coding upstream 141862 22913819 ~ 22923740 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding upstream 155688 22927645 ~ 22934861 (-)
fam120b fam120b coding upstream 192763 22964720 ~ 22977643 (-)
G51289 mea1 non-coding downstream 3462 22647350 ~ 22743272 (-)
G51276 NA non-coding downstream 138697 22605547 ~ 22608037 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding downstream 200244 22544227 ~ 22546490 (-)
G51058 NA non-coding downstream 553818 22107092 ~ 22192916 (-)
G51389 NA non-coding upstream 118102 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 118340 22890297 ~ 22890507 (-)
G51462 NA non-coding upstream 298386 23070343 ~ 23070721 (-)
LOC113539667 NA non-coding upstream 443891 23215848 ~ 23218757 (-)
G51523 NA non-coding upstream 488239 23260196 ~ 23266336 (-)
LOC113541574 LOC108263228 other downstream 174866 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 623085 22035285 ~ 22123649 (-)
G50837 NA other downstream 796545 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 1101222 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 1268029 21387743 ~ 21478705 (-)
znf318 znf318 other upstream 2398 22774355 ~ 22788804 (-)
G51576 NA other upstream 675951 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1244939 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1336394 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1680029 24451986 ~ 24651847 (-)

Expression


Co-expression Network