apmap (apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784)


Basic Information

Item Value
gene id apmap
gene name apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22913819 ~ 22923740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937407.2
acacacacacacacacacacacacacacacaccccagtgcTGTAACGTGAAAAGGAGAAGCAAAGGGAGCAGCTCCACAcggctgtggtgtgtgtgatgtaaagacTGCACTGCTCTTCAGCACAGCAGGGAGAAGTGAAAGATCAGCCATTTCAGTATGAATGAGCCAGAAGGACTGCGCTTCAGGAAGCTCAACAGACCGCAGATTGTAACTGACGAATCGCATGAACCCCAATACAAAAGCACGAGCACGTACAGTGGGAAGGTGTTCCGGGTCACTCTGCTGTCTCTGGCTGCGTTCCTGATTCTCCCAGTACTGGTGGTCACTTTTCTCCTGGAGTCCCCCATTCAGCCAGAAGCATTCAGTCTCAATGAACCACCGCTCATGACTGGTTGCTTTGAACCCAACCTAAAGCTTAGACAGGCAGAAAGACTATTTGAGGACCAGCTCGTTGGGCCTGAATCCATCGCTAATATTGGAGatatTCTGTACACAGGTACTGCAGATGGAAGGATTGTGAAAATTGATGGGAGGAAAATCAGTGTTGTGGCAACTCTGGGCAAGCCTCCATGTGGGTCTCCTGAGCAGGAGCATGTTTGTGGACGGCCGCTGGGAATTAGAGTGGGTCCGAATGGCACCTTGTTTGTGGCTGATGCCTACCTGGGGCTGTTTGAGGTTAATCCTGTCACAGGTGAGACAACACTTCTAGTGAGCACAAAGAAGATGATCGGGGGTCGACGTCTCTCCTTTGTCAATGACCTGGATGTGACACAGGATGGGAAGAAGGTGTATTTCACTGATTCTAGCAGCAGATGGCAGCGTAGGGACTTCATGAAACTCATCATGGAGGCCACAGCTGATGGCCGGGTTCTGGAGTATGATACTGAGACTAAAGAGGTTGCAGTCATGATGGAGAACTTGCGCTTTCCTAACGGTATTCAACTCCTTCCCGATGAAGAGTCTGTTCTTGTTGCTGAAACTACGATGGCAAGAATAAGGAGGATTCACGTGGCTGGTCTCAATAAGGGAGGCATGGACACTTTTATAGAAAACCTGCCTGGCTTCCCTGACAACATCCGCCGCAGCTCCTCTGGTGGTTACTGGGTGGCCATGTCTGCCATCCGGCCAAACCCGGGCTTCTCCATGCTCGACTTCTTGTCACAAAGACCCTGGATTAAGAATATCATATTTAAGCTCTTCAGCCAGGAAACACTAATGAAGTTTGTGCCGCGCTACAGTCTGGTGGTGGAGCTGCAGGATGGAGGAACATGTGTGCGGAGTTTCCATGACCCTCATGGCACTGTGGCGGCCTACATCAGCGAGGCGCATGAGCACAACGGTCACCTTTACCTGGGCTCCTTCCGCTCTCCTTACCTATGTAAACTGGACTTGAGCAAAGTGTAAAATAGTCCTAAAGGAACATGGGACTATAGGTCAGAGGCATTTCCTGGGGCTTCTTTATCAGTCATGTAACATTTCCTCAAGAAGCAGCAAACCTTTTTGTACCCTCTCCCATAATCCCCTGCTGAACTGAGGAACCTGAGTCCTTCATACCCATTCCTGCATTTAATTCAGATGCCATCATTCAGCTTTGATTTATGTTTAGGTTTTTGTTCTGCTGAGCCATGTGACTTTGTATTTTAATTCTCCCTTTTTAGGTTGagtgatgtgtatatataggcATGCCTGCAGATGTCAGcttgctttatttaaaagacaTGACATTTCTATATTTGTTTTGCTCCTATGACAGGAGGTGCACAGTGTTTGCActgtgatgtgttttatttgcacTGAACTGTCATCTGGCCCTTAAAATAGAGCTGCTGATTTACTTGAAAACTTTGAGACAGAAATATCAGTGCAGATGATGACTTgtgaaatttataaattctaGTTGCAGGACTGAAATGTAACTCTGGAATGATGAAACAGTATTTTAGAAATCCAGTGCTTTATcttaaaacactgacattatgTTTAAGAGTCTCTGAGCTTCCATTTGCAAAAATCATTTCAGCTTTGAAGAAGGAACTAACAATTAGCAATAATTTCCTGTTGAATGCTTATGCCAATTTGTGAATTGTGGTAACTGTCTGTGGTAACATTCATAGCAGCTACTGCATAGcatgtacaataaataaataaataaatagataaataaatgta

Function

symbol description
apmap Predicted to enable strictosidine synthase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct. Orthologous to human APMAP (adipocyte plasma membrane associated protein).

NR:

description
PREDICTED: adipocyte plasma membrane-associated protein

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016844 strictosidine synthase activity molecular_function

KEGG:

id description
K21407 APMAP; adipocyte plasma membrane-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937407.2 True 2170 mRNA 0.45 9 22913819 22923740

Neighbor

gene id symbol gene type direction distance location
LOC113540882 cul9 coding downstream 47376 22826230 ~ 22866443 (-)
si:dkeyp-121d4.3 LOC108263047 coding downstream 98871 22791183 ~ 22814948 (-)
ppp2r5d ppp2r5d,LOC106605890 coding downstream 141862 22746734 ~ 22771957 (-)
LOC113540936 dnph1 coding downstream 171344 22738208 ~ 22742475 (-)
LOC113540869 dnph1 coding downstream 184512 22726906 ~ 22729307 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding upstream 3905 22927645 ~ 22934861 (-)
fam120b fam120b coding upstream 40980 22964720 ~ 22977643 (-)
phf10 phf10,LOC106589650 coding upstream 108458 23032198 ~ 23049124 (-)
c1d c1d coding upstream 748679 23672419 ~ 23679981 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding upstream 803412 23727152 ~ 23750761 (-)
G51390 NA non-coding downstream 23312 22890297 ~ 22890507 (-)
G51389 NA non-coding downstream 23545 22890059 ~ 22890274 (-)
G51289 mea1 non-coding downstream 170547 22647350 ~ 22743272 (-)
G51276 NA non-coding downstream 305782 22605547 ~ 22608037 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding downstream 367329 22544227 ~ 22546490 (-)
G51462 NA non-coding upstream 146603 23070343 ~ 23070721 (-)
LOC113539667 NA non-coding upstream 292108 23215848 ~ 23218757 (-)
G51523 NA non-coding upstream 336456 23260196 ~ 23266336 (-)
G51557 NA non-coding upstream 489940 23413680 ~ 23413941 (-)
G51577 NA non-coding upstream 533760 23457500 ~ 23457991 (-)
znf318 znf318 other downstream 125015 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 341951 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 790170 22035285 ~ 22123649 (-)
G50837 NA other downstream 963630 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 1268307 21611663 ~ 21645512 (-)
G51576 NA other upstream 524168 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1093156 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1184611 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1528246 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 1738245 24661985 ~ 24735888 (-)

Expression


Co-expression Network