lrrc73 (lrrc73,LOC107728077,LOC106605838)


Basic Information

Item Value
gene id lrrc73
gene name lrrc73,LOC107728077,LOC106605838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22608479 ~ 22621693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937420.2
GAAACACACTCAGTGGAGACTTGCATTGTAGGCGACCCTTAGCACAATTCCCCCTACAGTAAGCGCTCAGAAGCGGATTATCTGCACCTCGAGGCTTTCAGAGCATCGCGAGGGATTTGGCTGGATGGGCTGCTGCTCTTTATCTGGACGGGTGGTGTCCATGGTAACGGACACCAGGAACGATTAGCTTTGTCTGGATGCCGCAAAACGCATTCGTGTTTCTCACGCAGAAGTGGACAACCTGAACCTGAGAATACTGCACCTGTTCAAGGGGTTAAAGCCATATTTATTGGCTTGCCAGCCCAAGAAATCAAACGAATTGAAGACCTGTTATCGGAGGAAAGGTCTGGGTCTGTCGGAACTTTGGAGATGCTAATGGCATGACCGCAAATCCTCAGGGTTTGTAGTTTTCCTCAAGCGGCATGCTGTTTCCTTTTCGCATCAGCACTCTGTTGTTTTAGTGTGGCTCTGAATGATGTAGCTAGTTATTTCGTGGGGGGCGTCGTCTCTTTTTGCTGCCGAAGTTAGCTGCCTTACCTCAGTTACCTGAATCGACGATGGTGTCGGCTCGAGCGTGACTTCCAGCCTCACCAAGATGCTGCCGGGTTCAATTCAGATCACAGGAGAGGCGCTGTCCGGAGCAGAAATCCGAGACATCTGCGACAGTCTGAAGGAGAACAGTGTGAGGCTGTTGTCGGTGCGGGGCTGTCAGCTGTCCGACAGGGACTTCGGGCGCGTGTGCCGCGGGGTGTCCGAGTCCCGCTCGCTCGCGCAGCTCAACCTGAACCTGGGCGTGGTGTCGAGCGGCGGCCGCGCAAAGCAGCTCGCCGAGGCGCTCACAGCCAACAGGTCCATACAGACACTGTTTCTGCATGGAAGCCCTCTTTTAGATGCAGGGTTGGTCACTCTGAACACGGCGCTGTCAACTCACCCCTCTCTGGTGTCCTTGGACCTGGGAGATTGTATGCTGGGAGATGAGGCGATTCAGCTGATTTGTGGCATGTTGCCTCCAGATGGGGCCAAATCTGGTCTCAGAGAGTTGACACTAAGTGCAAACCCAGCAATCACCACTAAAGGCTGGGCTCGCCTGGCAATCGCAGTGGCTCATAGCTCACAGCTGCGGGTCCTTAATCTAGACTACAATCCGTTAGGGGACCAGATTGCTGGAATGCTGGCTGTTGCTGTGGCATCCAGCAGGACACTGGAGGTTTTAGACTTGGAGGGAACAGGACTCACAAATCAATCAGCACAGGTCTTCCTGGACATGGTGGAGAACTACCCGACCTGTCTGCGTGTGCTGGTGCTGGCTGAGAACGCCATCAGCCCTGAGCTGCAGCAGCAGATCTCTGACCTCCTGTCTGAGGGcgaggaggatgaggacagAGATGCAGAGGCCCACGGCAGCTCAGTCACCATGCGAGAGAAACCTGCCTGGCTTCCCCACAGCAACCCCAACTCCCAGATGGTCCTGATGTCATCAGGACTGGGTGAGAGCTTTTTGGGAGAGACTGACTTGTGATAACTGGAGCTGCCTTTGGTTTTAGGTTTGCACTGCACGCCGCTACCGTCAGCCCACGTGTTAGCGTGCAGCCACTCACAAAGCATGACGTGTAGCATTTAGTGGTAGACTGTTCAACGCTGGCACAAAAATAACCTCGACCACCAAGTGACTTATACTCTAtagtgaattatttatttgcctGATGTACAATCTATTTATAAGTAACTATTTAAGCAACAGTGTACTCTTGATTAGATCAGCTAAGTAGGGTTGTTGTGATGGCCTGAATAAATCTATTTACATCTTTCTAA
>XM_034302890.1
TGCCATATACCACCTGTGTTTGTGACAAGAATCTGGGCTCATCTTTCACCAAGCTCCATCACCAAGCTCCAGGCTCTGCAACCAGATCTACTCTGGATACAATTGGTTAAACTATCAGCCATCACATTTTGGAAGAAGTCTGCATGGAAGCCCTCTTTTAGATGCAGGGTTGGTCACTCTGAACACGGCGCTGTCAACTCACCCCTCTCTGGTGTCCTTGGACCTGGGAGATTGTATGCTGGGAGATGAGGCGATTCAGCTGATTTGTGGCATGTTGCCTCCAGATGGGGCCAAATCTGGTCTCAGAGAGTTGACACTAAGTGCAAACCCAGCAATCACCACTAAAGGCTGGGCTCGCCTGGCAATCGCAGTGGCTCATAGCTCACAGCTGCGGGTCCTTAATCTAGACTACAATCCGTTAGGGGACCAGATTGCTGGAATGCTGGCTGTTGCTGTGGCATCCAGCAGGACACTGGAGGTTTTAGACTTGGAGGGAACAGGACTCACAAATCAATCAGCACAGGTCTTCCTGGACATGGTGGAGAACTACCCGACCTGTCTGCGTGTGCTGGTGCTGGCTGAGAACGCCATCAGCCCTGAGCTGCAGCAGCAGATCTCTGACCTCCTGTCTGAGGGcgaggaggatgaggacagAGATGCAGAGGCCCACGGCAGCTCAGTCACCATGCGAGAGAAACCTGCCTGGCTTCCCCACAGCAACCCCAACTCCCAGATGGTCCTGATGTCATCAGGACTGGGTGAGAGCTTTTTGGGAGAGACTGACTTGTGATAACTGGAGCTGCCTTTGGTTTTAGGTTTGCACTGCACGCCGCTACCGTCAGCCCACGTGTTAGCGTGCAGCCACTCACAAAGCATGACGTGTAGCATTTAGTGGTAGACTGTTCAACGCTGGCACAAAAATAACCTCGACCACCAAGTGACTTATACTCTAtagtgaattatttatttgcctGATGTACAATCTATTTATAAGTAACTATTTAAGCAACAGTGTACTCTTGATTAGATCAGCTAAGTAGGGTTGTTGTGATGGCCTGAATAAATCTATTTACATCTTTCTAA

Function

symbol description
lrrc73 Orthologous to human LRRC73 (leucine rich repeat containing 73).

NR:

description
leucine-rich repeat-containing protein 73

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937420.2 True 1812 mRNA 0.52 6 22609366 22621693
XM_034302890.1 False 1083 mRNA 0.50 6 22608479 22621693

Neighbor

gene id symbol gene type direction distance location
yipf3 yipf3,LOC107696384 coding upstream 449 22601556 ~ 22608030 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding upstream 20835 22571371 ~ 22587644 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding upstream 343060 22244109 ~ 22265419 (+)
LOC113537563 LOC108263692,LOC108422693 coding upstream 637519 21967741 ~ 21970960 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 648080 21954905 ~ 21960399 (+)
dlk2 dlk2 coding downstream 74702 22696395 ~ 22720888 (+)
mea1 mea1 coding downstream 121034 22742727 ~ 22745804 (+)
LOC113540824 syndig1,LOC107717853 coding downstream 249197 22870890 ~ 22890869 (+)
si:zfos-1056e6.1 LOC108263310 coding downstream 302828 22924521 ~ 22927550 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding downstream 359909 22981602 ~ 22986797 (+)
G51161 NA non-coding upstream 72042 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 158970 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 271435 22266697 ~ 22337044 (+)
G50938 NA non-coding upstream 320377 22285438 ~ 22288102 (+)
G50936 NA non-coding upstream 356431 22251835 ~ 22252048 (+)
LOC117596907 NA non-coding downstream 107629 22729322 ~ 22736667 (+)
G51358 NA non-coding downstream 336707 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 448628 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 451263 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 453037 23074730 ~ 23076471 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 55727 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 584668 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1489515 21025733 ~ 21118964 (+)
G49862 NA other upstream 2033000 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 2215878 20382346 ~ 20392601 (+)
G51271 znf318 other downstream 162635 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 289451 22911144 ~ 22913552 (+)
G51562 NA other downstream 832735 23454428 ~ 23455549 (+)
G51749 NA other downstream 1075339 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 1171987 23793680 ~ 23834851 (+)

Expression


Co-expression Network