LOC113540824 (syndig1,LOC107717853)


Basic Information

Item Value
gene id LOC113540824
gene name syndig1,LOC107717853
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22870890 ~ 22890869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937432.2
TGAAGCGTGTTTGAAATGCAGGAGAGTGTGTAATAcgttgaaataaataaataaataaataaacaagcgCGAGTGTCACCATGCAGCATCCTCTACACCGCTTCCACACGAAAGGCGCGTCCACTCCATCTGGCTGATTTTCCTCCTCTTTTCACACCTCCTACACTTTGGATGGAGGTTTTGGGTTAATCTTCTGTGCATCAGGACGGACACAAGGCACAAACATCCGCGTGCGTTTTGAACGCGGAACGGCACGCGCTCGGCTCGGAAGGAGAGAAGAGGGCAATGCTTCCACCTCATGTTTCTTCTCATGGATCACTCATGAGGCAAACTAGTGGCTGGACAGGGACCGTCCTAAGCATCAGCGTTCACTAGGCCAGAATGGAAGCAGGGCTCAGAACTGCCCCTAGAGCAGAAGAGGAGAAAGATCCACTTGCTCAGAGAAAGTTGTCAACAGCAGGTGGTGGTGACCTGGGGCCTGAGTGCTGCAAATGCAACGGTCTGATCAACACCCGAAGCGTAATGGTGGAGACCAAGGAAGGACGGGTGTCAGTGTACTCGGCCCCACAGTATCAGGGCCACGTGGTGGTCAATTATTCCCCCGAGCATGCGGGTCAGGACAGAAATGGGACACGGATAAGTGGGCACCATCCGCAACTGCTCAACCCCAGTGCCTTGCCCCAGGCTCTGGACCCTTTTTATAAGCCCAACCTCATCGTGTACCCAGAAGGAGTTCTGAGAGTGTGGGGGGAGGGAAGTGACTGCTGTGAGACCACGTTCATTGAGGACATGGCTCCTGCTAACTCCGCTGCTACAGTCACTAAAGATGGGCTCATGCTCACTGAAAACAAATTCCTGGATTTATCTATGGAGGATACCAAGATTCATACACTGTCCTACGATGTGGATGATGACGATGAGTTTCAAGAGCTGGAGAGTGAATACTCAAGTGACTCAGAGAGTGAGGACAACTTCCTGATGATGCCCCCTCGAGACCACCTGGGCCTCAGCGTCTTTTCAATGCTGTGCTGCTTCTGGCCCCTGGGCATCGCCGCCTTCTACCTGTCTCATGAGACTAACAAAGCAGTAAATAAAGGGGACTTTCACCAtgccagctccagctccagacGTGCTCTCTTCCTAGCTGTGCTGTCCATCACCATTGGTACCGGCATCTACGTTGGCGTAGCAGTGGCTCTTATTGCATACCTTTCCAAGAACAACCACTTGTAGCCTTGCATTGCCTCCCATCTTGCCACTGACTGTCAGTGTGGATTTACTGTAAGGGCCACTTAAGGGTATTGCACTGAGTAATGATCTACATACTCTACAGCACTTTTATGAATCACATGGAATTACAGAGTGGATCCTCATTAGTAAACATTGTGACATTGTAAATCATGGCATTCCTTTTTTCGTATTCACTGTTTATCACAGTGGCAATTGTGTTCAGATACTGTAGTAATAGACTTTAATACCTGTTTACAAGGCAACAACATCAGTATGCTTTGATTATCCACAGTATTTATTGTGCCAATCTAGTCTTTTGAGCCTTTAGTGTAGTCTTGTTTTCTTCTAGATGATGGTAAAGTATGAAAAACACAATCTATCTGAAGTGCCACAGTGCTTTGAAGCCTTCTTATAAAGAGCTACAATATTATAAGGACCACAAGAAGGGGCTTATTCAACACTCAAGGGTAAGATGGACGCAAAGCCATATAGATGGGCTGCAGGACTCTGAATGTGGACTTTCCTGGTCTAGCAGTAACATTCTGCTCTGAGAgagctgtaaatatttataaataattttttgtgaGATAAGACTGAACATCAAAACCAGGTCGTAGTCTTTCAGTTTCTACATGCCAAATTATGATGGTGTACATGCTTACACTCTGTTATGGATTTTCACCATGTGGGAGATTTTAACCACCGCTGAACTGCAACCTCTTGCCAATTAAATGTAGTATTTTCATTCAAATctagtgtttatttatgtaatctATGTGATTATACTTGATTGTGCCCTGCTCAATGGATTCTTGACCTGCACCACATGCTCAAGCAAACAAATGTATTTCACTGTCTTTCCCTACCCAGTGCTCAGGGCACCACAGATTGTCCAAATGCTCTCTCCCAAATCCTAACACATCTGAACCATGTTTTCAGTGGTCAAATTTTGTCACTGATGATATTTTGTCACTCTATAGGCATGATCATCTGATGGATCTTGTATGTCACCACTGAATCTTAATACATAGATGTTTGATTTGGCAACTAGTTATTCAAAGCTATATAACCTTAAGtattcaaaaaaaagaaaaagaaaaaagaaaactccaAACGTCTCTTAAACATGGTATGGTGGGAGATGGAACAGAACAAAAGTGTGTATACGCCTGGAGGACTGGGTTTGTAAATACTGCCTTACACCAAGAATAAGggtatatgtatacatatttgTGAGAGTTACTAAAAGCACCCTACATGCACAGCAAAATATACCTCTCCCTTATCAGCTGTAACTGCTCCACACACCTTCTTTATACAAACAAGTTTCTCTTAATACAAATCAGTATTATATACAAGTCAGTAAATATAGCCAGcaaaatattttagtatttttgcaAGAAGtatgtgaatccatttaacatatCCTTTTCCATAAGTTATCCACTATAGGTTATGACAAATATACATTTTAGCTGTGTCTCACAAGTCACTTCAACAGGAGGTTGCATCATCCTAATCTAACCCGATTATGGGAAGAATAAAAGTAAGTTATCTCATTCttctttttatgtattttcaatgatattgtgatattgactggcAAGGTCAAGCACTTTCAAGTAAAACCATGTTGCCCAAATTATAGACTGAGAgtaattctttaattatttaatcagcgATTCAGTGGAAAGGCCTTTATGTCCTCATGCCATTAGTATGAATGCTAGGTAcatatattgtgtgtatttggAAATTCTATGTTActtatttaagagcaaaatgcagccaactgaaataaaaaaaacaaaaaaaaaaaactttgtaaagAAAACAAGATTGCTGCCTGAGGTTGCCTCTGCCACTGAGTGGAAGAGATTCTCATTACAGGGTCAAATTCacagaaatagtttttcttcaacagcTTCTTTCATGTCTGAAGTacattttaagggtatttctagcacacaaattagtaacaagaaggactagacttgctGGTGGTGGAAGCATCCCTATCGACACTATAGGGCATCGAGTTTGATTTGTTTGAATGGGTAAATGAATGTTGTCTTAGCTTCAATGTtgagaaatgataaaaataaagtttaatggTTAAGAGCTACAATAACTAAAGGGCACCCTAGTAATGCAATCATGCTTATATAAAGCATATGCTGCTTTCATTGCCTCCAGAAGGGTTAAGCAGGATTCTTTGAAAAAGTACTGAATCCACTGCCCTAAATGAGTTTAGTAAAcacataaaagatataaaatatggCATTTTCAGAATACAGTTAGGATACATTTTTAAAGGGCAAATGTGAAACATTGAAatcacactgttctgttttattgATGACGGTTCTGGGAGGGGACCAGTGGAACTAATATTAtctttatttgaaatgttttctccTACAAAATAATTGGTAAATGTGTCCTGAATAGtacctttaaaatatttcatgcagTGAATACAAATATTTCACTACTGTATTCTGAATTAGTACTACTGTAACTGTGCTTTCCATTACAGCCCAACCCTGGCCATCAGTAGTCTTTAAGTCCCAGTCAGTCTTCAGTGCTTTGTCACAAATATATCATAATTGATTTGCTAGAGAAAGAAATGTCCACTCCACCTTATGGAATAGGAGATTATTGCCAAGGtattcagttcaattaaattcagGTTTATTGTCTTCTCAGTGTACAGGGTAACACTATAGTGTCACAAGCAGTGATAGATACCAAAGAGACCTTGAAGAAATCTACAATAAATGTGACTTAGAAATGAAGTCTCACCAGACTATAATTGTCACTTATTTCCCCCTCGCCTCTCAGCGTGCATAGCTCTTCCGTATTGCCTCGTGTTTGTTTAAGTTGCcacgtgtgtttttgttttggttcatgtcTTGTCTCCTCCCTTGGTTGTCTCCCTAATGTGTCTTGATTACTCTCATCTGTGTTCAGTTtgcccttgattagtttgtgtatttatagtcCTTGTGTCTCCTTGTTCGTGGCGGAGTATACGCTCTGTGTCATTTAGTACCAAGCCATTGACTATTTATTGTCTTTCTGGTTTTGCTCTTGCCTAGTGTTGTTGCTTGTTCATTGCCTGACTGTTTCCTGAATCTTACTCTGCCTATGGATtacg
>XM_026937440.2
GCACATGAATGATTGCACCAAGATGCCGCCGATGCATAACAGCCTCCTGAAGCCAGGTCGATCTGCTTTACGTGCTTCCAAAGGAGAGAAGAGGGCAATGCTTCCACCTCATGTTTCTTCTCATGGATCACTCATGAGGCAAACTAGTGGCTGGACAGGGACCGTCCTAAGCATCAGCGTTCACTAGGCCAGAATGGAAGCAGGGCTCAGAACTGCCCCTAGAGCAGAAGAGGAGAAAGATCCACTTGCTCAGAGAAAGTTGTCAACAGCAGGTGGTGGTGACCTGGGGCCTGAGTGCTGCAAATGCAACGGTCTGATCAACACCCGAAGCGTAATGGTGGAGACCAAGGAAGGACGGGTGTCAGTGTACTCGGCCCCACAGTATCAGGGCCACGTGGTGGTCAATTATTCCCCCGAGCATGCGGGTCAGGACAGAAATGGGACACGGATAAGTGGGCACCATCCGCAACTGCTCAACCCCAGTGCCTTGCCCCAGGCTCTGGACCCTTTTTATAAGCCCAACCTCATCGTGTACCCAGAAGGAGTTCTGAGAGTGTGGGGGGAGGGAAGTGACTGCTGTGAGACCACGTTCATTGAGGACATGGCTCCTGCTAACTCCGCTGCTACAGTCACTAAAGATGGGCTCATGCTCACTGAAAACAAATTCCTGGATTTATCTATGGAGGATACCAAGATTCATACACTGTCCTACGATGTGGATGATGACGATGAGTTTCAAGAGCTGGAGAGTGAATACTCAAGTGACTCAGAGAGTGAGGACAACTTCCTGATGATGCCCCCTCGAGACCACCTGGGCCTCAGCGTCTTTTCAATGCTGTGCTGCTTCTGGCCCCTGGGCATCGCCGCCTTCTACCTGTCTCATGAGACTAACAAAGCAGTAAATAAAGGGGACTTTCACCAtgccagctccagctccagacGTGCTCTCTTCCTAGCTGTGCTGTCCATCACCATTGGTACCGGCATCTACGTTGGCGTAGCAGTGGCTCTTATTGCATACCTTTCCAAGAACAACCACTTGTAG

Function

symbol description
syndig1 Predicted to enable glutamate receptor binding activity and protein homodimerization activity. Involved in positive regulation of synapse assembly. Located in intracellular membrane-bounded organelle.

NR:

description
PREDICTED: synapse differentiation-inducing gene protein 1

GO: NA

KEGG:

id description
K23903 SYNDIG1; synapse differentiation-inducing gene protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937432.2 True 4390 mRNA 0.41 4 22870890 22890869
XM_026937440.2 False 1045 mRNA 0.53 4 22871201 22887712

Neighbor

gene id symbol gene type direction distance location
mea1 mea1 coding upstream 125086 22742727 ~ 22745804 (+)
dlk2 dlk2 coding upstream 150002 22696395 ~ 22720888 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding upstream 249197 22608479 ~ 22621693 (+)
yipf3 yipf3,LOC107696384 coding upstream 262860 22601556 ~ 22608030 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding upstream 283246 22571371 ~ 22587644 (+)
si:zfos-1056e6.1 LOC108263310 coding downstream 33652 22924521 ~ 22927550 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding downstream 90733 22981602 ~ 22986797 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding downstream 161359 23052228 ~ 23069644 (+)
spred2b spred2,LOC108263653 coding downstream 180439 23071308 ~ 23101134 (+)
LOC113545030 NA coding downstream 223316 23114185 ~ 23115039 (+)
LOC117596907 NA non-coding upstream 134223 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 334453 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 421381 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 533846 22266697 ~ 22337044 (+)
G51358 NA non-coding downstream 67531 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 179452 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 182087 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 183861 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 316246 23207115 ~ 23275341 (+)
G51271 znf318 other upstream 84385 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 318138 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 847079 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1751926 21025733 ~ 21118964 (+)
G49862 NA other upstream 2295411 20574973 ~ 20575479 (+)
LOC113540861 LOC108263311 other downstream 20275 22911144 ~ 22913552 (+)
G51562 NA other downstream 563559 23454428 ~ 23455549 (+)
G51749 NA other downstream 806163 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 902811 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 1164285 24055154 ~ 24057898 (+)

Expression


Co-expression Network