mea1 (mea1)


Basic Information

Item Value
gene id mea1
gene name mea1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22742727 ~ 22745804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937451.2
ttttttttaagcgaTAAAGCAAATATCTGCGAAAGTGAAAATAGGTAAAGCACGTGTCGACTGTGGACAACATTGATATAGGGACAGCTTTGAACCCGTGCATGGAAGTGGAGAGGACCCGAGTCATGGGTCCAGAGAGAGTGTTGCCGAGCTCGGAGGAGGAGCTGGGGCAGGAGCGAGTGTCGGAGCCCGCGGCTGATGAGTGGAGCGGTGAGGACGGCGAGGAGGAGGACGGAGCCCCGGGGCAGGAAGAGGAGGACAGCGCGGGGTATTATTATCAACCACTGAACCAGGAGCCTGATGGAGGTCCCAACACACAGCTGGATCAAACCGACGAGGCATCACACGCCGATCAGCTGCAGGAGGTGCAGGAGAGAATAGAGGCCATGGGCTTGTTCCTGCCTCAGCCACCAGCTCCAGACAGTGACGAGGAGGAGGATCCTGAAGGAGCTGCTGCATGCCGGAGCCATGCGTCCATCCCTATGGATCCTGATCATGTTGAGCTCGTGAAAAGGACCATGGCAGCAGTGAACTTGCCGTCTCTGGGGATCCCTGCCTGGGCTCGTGAGATTTCAGATGACCAGTGGAAGGACATGGTGCAGAAGACTCTCCAGTCTCGGCAGAGCTCAGCAGGCCTCTTACTGCAACGCAAATGAAATTACCTAAGGCCTTTATCACATTCTCCTTGCAGCTCGTATTTGCATCACTAATAAAGCATCGAAAGAGCCTGTAAGATCATGTGACTGAGGTGACAAAGAAcaattgtttattatatattgtatttgtttGAAAGGAATGCACCCATGATGCACAGAATACTCTAAAATTTTGTGGGGTTTGATGTATTTCAGTATAGTTAGTGTGGCTCCTAAACATTCCCTCCTTAACTGCTGAAAAccagttttaatattttggtgTCTTTAACTGCATTGTAAAATCTAGAACATCTTTTTCTGTTCCTTTCAGTATCgttcagttcagtttatttccatattttaaGACATCTCCCAGTAATGACAATATTCATATGCTTAAGTGACTTACAATCCTCTGCAGCTTACTGATGCATGTGTCCTGCAcattcagaaatgtatttttgtctttcatttttaactttatttttgttctgtacATACATGAACATCTGTACAAAATATGACTTTCATAGTATGTAATGCTCTGCCTAATTAAAGTACAACATATGTACATATGACCCGGAAAGCA
>XM_026937459.2
ttttttttaagcgaTAAAGCAAATATCTGCGAAAGTGAAAATAGGTAAAGCACGTGTCGACTGTGGACAACATTGATATAGACGCGGTGTATTTACTGGCCGCAGGGACAGCTTTGAACCCGTGCATGGAAGTGGAGAGGACCCGAGTCATGGGTCCAGAGAGAGTGTTGCCGAGCTCGGAGGAGGAGCTGGGGCAGGAGCGAGTGTCGGAGCCCGCGGCTGATGAGTGGAGCGGTGAGGACGGCGAGGAGGAGGACGGAGCCCCGGGGCAGGAAGAGGAGGACAGCGCGGGGTATTATTATCAACCACTGAACCAGGAGCCTGATGGAGGTCCCAACACACAGCTGGATCAAACCGACGAGGCATCACACGCCGATCAGCTGCAGGAGGTGCAGGAGAGAATAGAGGCCATGGGCTTGTTCCTGCCTCAGCCACCAGCTCCAGACAGTGACGAGGAGGAGGATCCTGAAGGAGCTGCTGCATGCCGGAGCCATGCGTCCATCCCTATGGATCCTGATCATGTTGAGCTCGTGAAAAGGACCATGGCAGCAGTGAACTTGCCGTCTCTGGGGATCCCTGCCTGGGCTCGTGAGATTTCAGATGACCAGTGGAAGGACATGGTGCAGAAGACTCTCCAGTCTCGGCAGAGCTCAGCAGGCCTCTTACTGCAACGCAAATGAAATTACCTAAGGCCTTTATCACATTCTCCTTGCAGCTCGTATTTGCATCACTAATAAAGCATCGAAAGAGCCTGTAAGATCATGTGACTGAGGTGACAAAGAAcaattgtttattatatattgtatttgtttGAAAGGAATGCACCCATGATGCACAGAATACTCTAAAATTTTGTGGGGTTTGATGTATTTCAGTATAGTTAGTGTGGCTCCTAAACATTCCCTCCTTAACTGCTGAAAAccagttttaatattttggtgTCTTTAACTGCATTGTAAAATCTAGAACATCTTTTTCTGTTCCTTTCAGTATCgttcagttcagtttatttccatattttaaGACATCTCCCAGTAATGACAATATTCATATGCTTAAGTGACTTACAATCCTCTGCAGCTTACTGATGCATGTGTCCTGCAcattcagaaatgtatttttgtctttcatttttaactttatttttgttctgtacATACATGAACATCTGTACAAAATATGACTTTCATAGTATGTAATGCTCTGCCTAATTAAAGTACAACATATGTACATATGACCCGGAAAGCA

Function

symbol description
mea1 Predicted to act upstream of or within spermatogenesis. Orthologous to human MEA1 (male-enhanced antigen 1).

NR:

description
male-enhanced antigen 1

GO:

id name namespace
GO:0007283 spermatogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937451.2 False 1224 mRNA 0.46 4 22742727 22745804
XM_026937459.2 True 1248 mRNA 0.46 4 22742727 22745804

Neighbor

gene id symbol gene type direction distance location
dlk2 dlk2 coding upstream 21839 22696395 ~ 22720888 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding upstream 121034 22608479 ~ 22621693 (+)
yipf3 yipf3,LOC107696384 coding upstream 134697 22601556 ~ 22608030 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding upstream 155083 22571371 ~ 22587644 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding upstream 477308 22244109 ~ 22265419 (+)
LOC113540824 syndig1,LOC107717853 coding downstream 125086 22870890 ~ 22890869 (+)
si:zfos-1056e6.1 LOC108263310 coding downstream 178717 22924521 ~ 22927550 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding downstream 235798 22981602 ~ 22986797 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding downstream 306424 23052228 ~ 23069644 (+)
spred2b spred2,LOC108263653 coding downstream 325504 23071308 ~ 23101134 (+)
LOC117596907 NA non-coding upstream 6060 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 206290 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 293218 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 405683 22266697 ~ 22337044 (+)
G50938 NA non-coding upstream 454625 22285438 ~ 22288102 (+)
G51358 NA non-coding downstream 212596 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 324517 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 327152 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 328926 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 461311 23207115 ~ 23275341 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 189975 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 718916 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1623763 21025733 ~ 21118964 (+)
G49862 NA other upstream 2167248 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 2350126 20382346 ~ 20392601 (+)
G51271 znf318 other downstream 38524 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 165340 22911144 ~ 22913552 (+)
G51562 NA other downstream 708624 23454428 ~ 23455549 (+)
G51749 NA other downstream 951228 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 1047876 23793680 ~ 23834851 (+)

Expression


Co-expression Network