LOC113540869 (dnph1)


Basic Information

Item Value
gene id LOC113540869
gene name dnph1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22726906 ~ 22729307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937502.2
CACCAGGGGGCGCTGATCACCAACCCTGAGAGACGGAGACTCGTGTCGAAAGCGCGGCATCTTTACAGATAGCgctacattttcatttactgcACTTTTGGTAAGACTGCACGCGatgaatatatatttctgtggCAGTATCAGGGGAGGAAGGCAGGATGTGAAGATTTATCAAAAAATTGTGAAGAAACTGCAGAACTATGGACAAGTTTTGACAGAGCACGTGACCCATGATGATATATCTGAGAAAGGTGAGAATGCTCTACCGGAAGGAGATGCGGCTATCTATGACCGTGATATGGAGTGGCTGACTCAGTCTGATGTTGTAGTTGCTGAAGTAACCCAACCGTCTTTTGGTGTGGGTTATGAAATCGGTCAAGCCATGGCCATGAAAAAGAGAATTCTCTGCCTTTTCCGACCCTCATCAGGGAAAGTGCTGTCTGCCATGATACGGGGTGCTGAGGGCAAGTTGGGCAGCTCTCACTTCCAGGTACTGGATTATGCGGAAGAGGAAGTTGAAGGCATCCTGGAGAATTATTTTGGTGAACTCACCAAGAACTaatatgaaatgtgtaaaatgcactatattgccaaatgtatgaatacctgaccatcacagccagaTTTTTTTGTTGAACATGTCTTTCCAAAACTATGGCCATGAATATGGAGCTGGTCCCCCCTTTGCTTTTATAACAGcgtccactcttctgggaaggcttgcCACTAGATCTTGGAATGGCACAGATATTGGGTGAGGAGGCCAGGtacacagtcagcattccaattcattccagagctctgtgcaggtcactcgggTTCtcccactccaaccttggcaaaccttgTCTTCGAGGGCctcaggtttgggccccttagttccagtgaaggggaattcagcatacaaagacatcctatataattgtgtgctttcaactttgtgggaCACAAACAGTTTGGGGACGACCCACataggggtgtgatggtcaggtgtccacatacctttggtcatatagtgcaGATCACTCATAATGTAATGAGTAATTTCATTATCCAACTCTGGATAGAACTATTTTTGTAAGTAGTAAGATATTTTCAGTTAAATAGTTCAGAGGCACTTAGGTTTTATATAAATTACTGACACATGatgcatttgtgtttgttaaaataTGGGTGTCTCTCAGATTGAAAGATTTAAAACAAGATTTCACAAGCAAAAATGTTGTGATGTTTTCTATCATATTAAAGTGTTactgttcattatttttccacatt

Function

symbol description
dnph1 Predicted to enable deoxyribonucleoside 5'-monophosphate N-glycosidase activity. Predicted to be involved in deoxyribonucleoside monophosphate catabolic process and positive regulation of cell growth. Predicted to be located in nucleus. Orthologous to human DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1).

NR:

description
PREDICTED: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 isoform X3

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009159 deoxyribonucleoside monophosphate catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050144 nucleoside deoxyribosyltransferase activity molecular_function
GO:0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity molecular_function

KEGG:

id description
K22928 DNPH1; 2'-deoxynucleoside 5'-phosphate N-hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937502.2 True 1275 mRNA 0.43 4 22726906 22729307

Neighbor

gene id symbol gene type direction distance location
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 37601 22626634 ~ 22689305 (-)
ncoa4 ncoa4 coding downstream 128707 22589052 ~ 22598199 (-)
prkn park2 coding downstream 302495 22317419 ~ 22424411 (-)
LOC113538327 LOC108263699,LOC108420514 coding downstream 409527 22300917 ~ 22317379 (-)
ubr2 ubr2 coding downstream 427544 22266696 ~ 22299362 (-)
LOC113540936 dnph1 coding upstream 8901 22738208 ~ 22742475 (-)
ppp2r5d ppp2r5d,LOC106605890 coding upstream 17427 22746734 ~ 22771957 (-)
si:dkeyp-121d4.3 LOC108263047 coding upstream 61876 22791183 ~ 22814948 (-)
LOC113540882 cul9 coding upstream 96923 22826230 ~ 22866443 (-)
apmap apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784 coding upstream 184512 22913819 ~ 22923740 (-)
G51276 NA non-coding downstream 118869 22605547 ~ 22608037 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding downstream 180416 22544227 ~ 22546490 (-)
G51058 NA non-coding downstream 533990 22107092 ~ 22192916 (-)
G51389 NA non-coding upstream 160752 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 160990 22890297 ~ 22890507 (-)
G51462 NA non-coding upstream 341036 23070343 ~ 23070721 (-)
LOC113539667 NA non-coding upstream 486541 23215848 ~ 23218757 (-)
G51523 NA non-coding upstream 530889 23260196 ~ 23266336 (-)
LOC113541574 LOC108263228 other downstream 155038 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 603257 22035285 ~ 22123649 (-)
G50837 NA other downstream 776717 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 1081394 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 1248201 21387743 ~ 21478705 (-)
znf318 znf318 other upstream 45048 22774355 ~ 22788804 (-)
G51576 NA other upstream 718601 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1287589 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1379044 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1722679 24451986 ~ 24651847 (-)

Expression


Co-expression Network