rel (rel)


Basic Information

Item Value
gene id rel
gene name rel
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13545526 ~ 13554549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937724.2
CACTGCAGAGTTCAGTCGTCGCTCATTCAGTCGGGTCCAGATACACGTACTGTAAACTGCTGTCAGGGTGTCCACAGAAATGGATGTGGGAGAGCCCTGTGTTCAGATCTTTGAACAACCCAAACAAAGAGGCATGCGCTTCAGGTATAAGTGCGAAGGCCGTTCAGCGGGGAGTATACCTGGAGAAAGAAGTTCTGACAATAATAGAACTTATCCAAGCATTCAGATTCTCAACACCTGTGGAAGAGGAAAAGTGCGTGTGTCATTGGTAACCAAAAATGAGCCATACAGACCACACCCACATGACCTGGTGGGGAAAGACTGCAAGGATGGATATTATGAGGCAGAATTTGGACCTGAACGCAGAGTTATTGCcTTCCAGAACCTGGGCATCCAATGTGTAAGGAGAAGAGAGGTCAGGGATGCCATAATGCAGAGAATGAACCGAGGCCTCAACCCCTTCAATGTTCCTAGGGAACAGCTCTTGCAGACGGAGGAATACGACCTGAACGTGGTCCGTCTATGTTTCCAGGTCTTTCTGCAAAATGAGACTGGATCCTACAGCATTCCGCTGCCACCTGTCATCTCCAATCCCATCTATGACAACCGTGCCCCAAACACAGCTGAGCTGCGTATCTGCCGTGTTAACAAAAACAGTGGCAGCGTGAAGGGTGGCGATGAGATCTTCCTGCTCTGTGACAAAGTCCAGAAAGATGATATAGAAGTGCGCTTCTTCACCCAGACCTGGGAGGCCAGAGGCTCCTTCTCCCAGGCAGATGTGCACAGGCAGGTGGCTATCGTTTTCCGTACGCCTGCCTACTGCGACACCTCCATCACATCTCCTGTCACTGTGCACATGCAGCTACGCCGCCCCACTGACCAGGAAGTGAGTGAACCCATGGAGTTTAGGTACCTGCCTGATGACAAAGatcCATATGGCTGTCGAGAAAAGAAGCGAAAAATTGAGAATCTAATGAAGTCCTTCCCCAGTTTCACGCCTATGGGCAGAAAAGCAGTATCTCAACCTCCTATGATGGGCCCAAGGATTAAAAGTGAGCCAAATTCCTATGGAAAGCCCCCTCATCATGCTATAatgaggccaaatcaacaaatgATGTACAACAATACCTATCAGCCCCAACGTATGATGCCATCCACTTCAGCATCTCCAGCTTCAGTATCATTCAATCAAGGTCAATGGGCTAttccttcacttcacttcagccCAGCTAGCAGCAACCCTGGGGCCAGTAACGGAGTGGGTATGTCACAGGTTAACCCAGTTAACCCAGCTCCCTCCCTAAGCACTACCGGGGAGAGTGGAAACAGCCTCCCCTTACTGAATTCAGTGGATCTGGAGTTTCTTGAAACTCAAGACCCTTCTGCCAGCCAGCCCCGGCAGGAGCAGCTGGAGCACAGTGTCCAGCATTCACAGCAGCCTCTCCACAGGAAGGAAACCATGCCTGCTGGCGAAAGCATCTGGCAAAACTTTGATCTCTCACAAGCATCAGGAACACAAAATGGGCCTGCAAACACAGGGCTGATGGGGATAAATTACACATATTCAGATAGTCATGATGGAAATGAAATGCTTCATAGCCTAGTAGGCCCTCAGACAGGTCTTCATTTAAAACAAGAGCCTCAAGGTCAAAGTACCTTGGCAATGCTGGACCCTAACAACTCCAACCTCTTTGACTGCACACAATCCTACCCCATGCTCAACTATCCAGCGACCAGCAGCAGCAATCAGGAGGCCATGAGACATGCAGCCAGCAGTGGAGCCAGTGGGTCAGTACAGAGGAACACACAGAACCCATCCTTCTCCCTCACCAGCATGGTCCAAGAAGCCCACCTCGATAGCCTCAACTGGCCCTACGGTCAATTTGGTGGCGAATAAGAGAAAAATTCAGCACTGTTTTAAACTATGgataataatatatgtatgttGTTTTGAGAGTGAGTAACTGaaactatattttttattgtttaaatagCTTTGCTGGATGTTGTCTGGAATAATCTTTAGTCCTTACAGTTTAGTTGAGTCAATGATGAGGCACTGAGTTTATGGTTATAGCGGATGATACTGTAGCTGGAGCAGGTAACATCTGAATAATTTCtgcaataaacatttacagtaagaATTTAACAGTAAGCTTATTGGGCCTCCAAAGCCCAATAAGACACCACTGTCATATTAAAAAAGGCAGCAATGTTTTCAATGAATATGTACATAGATTTTGACAAAGATATTTAGGCAATTCTGGAAAACCTGTCCAAACTTTCTTAAGTGTGAGAAAGTAATTCTGTTCTCTGGAACTTGCAGGGATCCTCAGACCCTGTGTAATGGCTATGTCATATTAAACACAAGTTCTATCATC
>XM_034302760.1
CCTAGAGTACTTGATATCACTGCAGAGTTCAGTCGTCGCTCATTCAGTCGGGTCCAGATACACGTACTGTAAACTGCTGTCAGGGTGTCCACAGAAATGGATGCTCATTTCCCTGTACTGAACATGGGAGAGCCCTGTGTTCAGATCTTTGAACAACCCAAACAAAGAGGCATGCGCTTCAGGTATAAGTGCGAAGGCCGTTCAGCGGGGAGTATACCTGGAGAAAGAAGTTCTGACAATAATAGAACTTATCCAAGCATTCAGATTCTCAACACCTGTGGAAGAGGAAAAGTGCGTGTGTCATTGGTAACCAAAAATGAGCCATACAGACCACACCCACATGACCTGGTGGGGAAAGACTGCAAGGATGGATATTATGAGGCAGAATTTGGACCTGAACGCAGAGTTATTGCcTTCCAGAACCTGGGCATCCAATGTGTAAGGAGAAGAGAGGTCAGGGATGCCATAATGCAGAGAATGAACCGAGGCCTCAACCCCTTCAATGTTCCTAGGGAACAGCTCTTGCAGACGGAGGAATACGACCTGAACGTGGTCCGTCTATGTTTCCAGGTCTTTCTGCAAAATGAGACTGGATCCTACAGCATTCCGCTGCCACCTGTCATCTCCAATCCCATCTATGACAACCGTGCCCCAAACACAGCTGAGCTGCGTATCTGCCGTGTTAACAAAAACAGTGGCAGCGTGAAGGGTGGCGATGAGATCTTCCTGCTCTGTGACAAAGTCCAGAAAGATGATATAGAAGTGCGCTTCTTCACCCAGACCTGGGAGGCCAGAGGCTCCTTCTCCCAGGCAGATGTGCACAGGCAGGTGGCTATCGTTTTCCGTACGCCTGCCTACTGCGACACCTCCATCACATCTCCTGTCACTGTGCACATGCAGCTACGCCGCCCCACTGACCAGGAAGTGAGTGAACCCATGGAGTTTAGGTACCTGCCTGATGACAAAGatcCATATGGCTGTCGAGAAAAGAAGCGAAAAATTGAGAATCTAATGAAGTCCTTCCCCAGTTTCACGCCTATGGGCAGAAAAGCAGTATCTCAACCTCCTATGATGGGCCCAAGGATTAAAAGTGAGCCAAATTCCTATGGAAAGCCCCCTCATCATGCTATAatgaggccaaatcaacaaatgATGTACAACAATACCTATCAGCCCCAACGTATGATGCCATCCACTTCAGCATCTCCAGCTTCAGTATCATTCAATCAAGGTCAATGGGCTAttccttcacttcacttcagccCAGCTAGCAGCAACCCTGGGGCCAGTAACGGAGTGGGTATGTCACAGGTTAACCCAGTTAACCCAGCTCCCTCCCTAAGCACTACCGGGGAGAGTGGAAACAGCCTCCCCTTACTGAATTCAGTGGATCTGGAGTTTCTTGAAACTCAAGACCCTTCTGCCAGCCAGCCCCGGCAGGAGCAGCTGGAGCACAGTGTCCAGCATTCACAGCAGCCTCTCCACAGGAAGGAAACCATGCCTGCTGGCGAAAGCATCTGGCAAAACTTTGATCTCTCACAAGCATCAGGAACACAAAATGGGCCTGCAAACACAGGGCTGATGGGGATAAATTACACATATTCAGATAGTCATGATGGAAATGAAATGCTTCATAGCCTAGTAGGCCCTCAGACAGGTCTTCATTTAAAACAAGAGCCTCAAGGTCAAAGTACCTTGGCAATGCTGGACCCTAACAACTCCAACCTCTTTGACTGCACACAATCCTACCCCATGCTCAACTATCCAGCGACCAGCAGCAGCAATCAGGAGGCCATGAGACATGCAGCCAGCAGTGGAGCCAGTGGGTCAGTACAGAGGAACACACAGAACCCATCCTTCTCCCTCACCAGCATGGTCCAAGAAGCCCACCTCGATAGCCTCAACTGGCCCTACGGTCAATTTGGTGGCGAATAAGAGAAAAATTCAGCACTGTTTTAAACTATGgataataatatatgtatgttGTTTTGAGAGTGAGTAACTGaaactatattttttattgtttaaatagCTTTGCTGGATGTTGTCTGGAATAATCTTTAGTCCTTACAGTTTAGTTGAGTCAATGATGAGGCACTGAGTTTATGGTTATAGCGGATGATACTGTAGCTGGAGCAGGTAACATCTGAATAATTTCtgcaataaacatttacagtaagaATTTAACAGTAAGCTTATTGGGCCTCCAAAGCCCAATAAGACACCACTGTCATATTAAAAAAGGCAGCAATGTTTTCAATGAATATGTACATAGATTTTGACAAAGATATTTAGGCAATTCTGGAAAACCTGTCCAAACTTTCTTAAGTGTGAGAAAGTAATTCTGTTCTCTGGAACTTGCAGGGATCCTCAGACCCTGTGTAATGGCTATGTCATATTAAACACAAGTTCTATCATC

Function

symbol description
rel Enables protein heterodimerization activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Is expressed in intestine. Orthologous to human REL (REL proto-oncogene, NF-kB subunit).

NR:

description
proto-oncogene c-Rel-like

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09254 REL; c-Rel proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937724.2 False 2381 mRNA 0.47 9 13545526 13554532
XM_034302760.1 True 2419 mRNA 0.47 10 13545526 13554549

Neighbor

gene id symbol gene type direction distance location
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding downstream 8659 13531660 ~ 13536867 (-)
sgpl1 sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334 coding downstream 28429 13502714 ~ 13517097 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding downstream 47565 13465041 ~ 13497961 (-)
ret ret coding downstream 85949 13437136 ~ 13459577 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding downstream 127855 13405268 ~ 13417671 (-)
papolg papolg coding upstream 2324 13556873 ~ 13571810 (-)
LOC117596880 NA coding upstream 297944 13852493 ~ 14033717 (-)
vrk2 vrk2 coding upstream 501593 14056142 ~ 14068978 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 813638 14368187 ~ 14387373 (-)
kcnq5a kcnq5,LOC107718835 coding upstream 834438 14388987 ~ 14514886 (-)
G45755 NA non-coding downstream 80787 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 232370 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 235286 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 295149 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 639051 12906274 ~ 12906475 (-)
LOC113543535 NA non-coding upstream 78206 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 629219 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 735007 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 1058992 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 1059967 14614516 ~ 14614764 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 110040 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 514330 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 905924 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 906203 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 912108 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 627342 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1225307 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1858364 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2890147 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 3424582 16979131 ~ 16982729 (-)

Expression


Co-expression Network