LOC113540998 (LOC108262906)


Basic Information

Item Value
gene id LOC113540998
gene name LOC108262906
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19301205 ~ 19302542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937744.1
ATGGCGCCCCGCAGCCACAGCGCGCACTCATGTGCACATGCAACACGCGCATTTGGAGACAGAGACCGGCGCATCTTACTCACAATACCTCGAGCAGCACAGAAGCAGAACAGTGCTCAGAAGCGCAGAGGTCCCGGTCGCCATGACGCTTCCAAACCTCACATTTGTTTCAAGCAGAAAGCGTTACTAACACACCGGAGACGCTTTTACGCGCCCATGGAGCCTGAAACGGCGCTGAACGCGTGTTTTGTGGGTTTTGATGGAGGGATTCAGCAGCTGAGGGGCGAAGACACTGCGGTTATCTTACCTGCCATTTTTGGATTGATCAGCGCGGTAGGAATAGTAGGAAATGTTTTGGTAATTGTCATACTGATACACGATATAATAGTTAAGAAAAGTGCTTGTGGGATTGTCCTGATGCTTGTTAATCTCAGTGGAACAGATCTGGTGATCCTTGCAGTGTGCACTTCGACCCGGGCGATCACTTATCACAACCGGACATGGACACTTGGACATTTGGCCTGCCGGACAGCAGAGTGGTTCCAGCATGGCTGTTTGGCAGCAAAATCTCTCACACTGGCAGTCATGAGCCGAGCGCGATATAATTTTGACTGTGATCCTCACCTCAAGATAAAGAGAGTTCTCATTGCTGCTGGCTCTATATGGGCTCTTGGGTTAGCGCTACCAGTCGCTGAGATCATTTACTCTAAGCTGGAGGTGAAGGGGAACTTCAGTCTGTGCGTCACTGAGTTACCAAGTCACTCCTCTGACTTCATGCGCGTGCACAGTATAATCTACGCTCTGGTGGTCTACGCCTTCCCGGTCATCTTTTCCGCCGTGTGCCATGTGCGTGCCATCTTCCGAGTGACACGTGGCCACGGGGCGCGTGCGGCGCGCAGGACTGAAAGCCGCCTCGCGCTGCTGAGCGTCACTGCAGCTAATGCGCTTCTGCTGCTGCCCGGGTGGACAGTGTGGCTGTGGCTGCGTCACAGTTCCCGCGAGACCTGCGAACCCCCTGCCGCGCTGCTCGTCCTCGCCCAGGTGTGCACCTACCTGACCAGCGCATCGTCTCCCGCCATCCTCCTCACCATGCTTGTCCCTCTCAGAGACAACCTGGCCTGGATCATGTGTCGGGGAGCATCGTGGGAAGGGAGAAGGGAGCGGAGCGCGATGGCTGTCGGTGCGCTGGATGATGGCATGGTGATGCACACTGACGCGCTCGGGAGACCTCTGCCTGATGTCCAGCATTTCTGGAACAGTCGGAGGAACACTGCAGTTCCAGACAACACCAACCCATTTCCGTGGGAAGGACTGGAGCACTGCCATGCTGAACTCTGA

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 151 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937744.1 True 1338 mRNA 0.56 1 19301205 19302542

Neighbor

gene id symbol gene type direction distance location
mavs NA coding downstream 6504 19287108 ~ 19294701 (-)
pank2 pank2,LOC107690147,LOC107733768,LOC107582531 coding downstream 15164 19283096 ~ 19286041 (-)
loxl3b loxl3b,LOC108263239,LOC108441751,LOC107690148,LOC107708481,LOC107678544 coding downstream 19376 19261810 ~ 19281829 (-)
alms1 alms1 coding downstream 65540 19222426 ~ 19235665 (-)
zgc:123321 yipf7 coding downstream 81602 19217614 ~ 19219603 (-)
emx1 emx1,LOC108263581,LOC108441775,LOC103045183,LOC107567848,LOC107678523,LOC107733702,LOC107718448 coding upstream 55073 19357615 ~ 19362980 (-)
noto LOC108263580 coding upstream 71767 19374309 ~ 19375581 (-)
eif2ak3 eif2ak3,LOC107683275 coding upstream 366863 19669405 ~ 19700122 (-)
rpia rpia,LOC107695020,LOC107568642,LOC107671341 coding upstream 398537 19701079 ~ 19713506 (-)
c3h20orf194 c3h20orf194 coding upstream 485202 19787744 ~ 19807623 (-)
G49184 NA non-coding downstream 49342 19251593 ~ 19251863 (-)
G49108 NA non-coding downstream 110590 19190327 ~ 19190615 (-)
G49053 NA non-coding downstream 248454 19052527 ~ 19052751 (-)
G48975 NA non-coding downstream 331409 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 343746 18957157 ~ 18957459 (-)
G49215 NA non-coding upstream 98122 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 125204 19427746 ~ 19428725 (-)
G49481 NA non-coding upstream 386050 19688592 ~ 19688877 (-)
G49484 NA non-coding upstream 411623 19714165 ~ 19715420 (-)
G49584 LOC108263592 non-coding upstream 593156 19895698 ~ 19970294 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 687684 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1639786 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1726783 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1825113 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 2318476 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 13945 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 312175 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 414058 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 879511 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 922367 20224909 ~ 20256520 (-)

Expression


Co-expression Network