col17a1b (LOC108263226,LOC108426809)


Basic Information

Item Value
gene id col17a1b
gene name LOC108263226,LOC108426809
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12982406 ~ 13005323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937794.2
AGGAGTCCTGCAGAGGCTTGTTGGTGAAAGTGggaagaagattaaaaaaaagttgtagaTGGAACAAAGATAAATACTTGATATCTGTGTGGCAGGAGTGAACTTCACACTTAACCACCAACTCCTATCTGGTCTTCTCAAggaacattttacatttatttgtgcaAAATCAAAACTTTCTCCTGAGTTTCACCTGGACTTCAGCATGGAATGGATGTCTTAACGAGGCAAACAGACGATTCAGGAGGCAGTTCAGGAGAGAGAGTTATAACTGAAACAATTTCGACAACCAGACTCACATCATTACCACCAAAGGGCTTCAGTGGATCTAGCAGTAAGAGCATGAGTAACAGCTCTTGGGGAAGCGGCTTCGAGAAGAATATTCTAAACCAAAACAGCAGCACCTCCTACTTGCCATCCTCCTCAGTGGGTGTGAATGCAGGAGGATCAGAGTTAGACTATGCCCTGTTTCTGGGAGATGACTCCACTGGGACTAGAAGAAGTGGAGTGGGACGTGGAGGCACTGCAGGATTTGAAAGTGTATCTGGAAAAGACTCTGGGTCAAAGAGCAGGTCCAGCTCCTCAGGGGGCTTGAGACGGACACAAGGTTCATCCTCCTCCATTAGCCACTCCCCCATTTTCTTGGAGAGAAAAACTACCATCAGTCACTCAGGAGGTTATGACGGAAGTTCAAGCGCCAACTCATCACCAGAGCTCACGAGGAAGGACTATGGCTCATCTAGAGGAAGGTCCCAAACCAGAGAGAGTGAAATCAGGGTCAGATTACAGAGTGCATCTCCATCAACCAAATGGACAGAGCTGGATGATGTGAAGAAACTTGTGAAGAGTGGACGATCGTCAAGTGTCAGCCCCACCCGCTCCACAGCCTCCTCCACCCTGCCTGTTCCACGCAAAGCTAAAGTCGAGACCAAAATCATTAAACAAGGCAGTCAGACTGTCTCAGGGCAGTATGACACCACTATTCTGGACTCGGCTCTTCCGTCGTATACATGGACCAGCTCCACACTGCCCTCTAATGCTTCCAGCACTACTGCTTTTGCTTATCAAAGCAGCACCAATAACATGTCACCAGGATCTTCTCTTTTAAACACCACTTCACCTTCCTCACTGTCAGtgtATGGCTTCCAGAATAATCTTGCCACGCCATCTAGTACACTTCTCACATCAAATACAGTTAACACACATTCGGGATACGGTGTGCAGAAAAACATTTCTCAGAGCATCGGTAGCTCTGGTCTTGTTAGTACAGGAGTTTCTACTTCTACAGGCACAACTACACGTTCTGTTAATGATGACATGCCACGAAAATATATTATACTTGAGAAGGAGAATATTCCttcaaaaaaggaaacagaagTGCTCATTCTGTCAAAGGACAGTGGGAAGCAGTTCTCCAGCAGCAGCACATCTAATGGAAAAGGAGGGTCTGTTTCGGATGTCTCACTGAAGAAGGAGACCATGGCAAGCAGCTACACTGAGACAGCTCCTGTCAAATTAAGTTCAAGCTCCTACTATGGAGCTTCATCAGTCCCTACCAAAGATAAGGCTACATACGCAGAGATCTATAAGGAGAAGGGTGATGGAAAAGGAGGAGATGGCTGCTTTGGCTGTGGTCCGAGCTGCTGCTCCTGGTGGAAGTGGCTGCTTGGACTGCTACTCAGTCTTCTGTTGCTCCTCGGCCTCCTTTTTGGACTCATCGCTCTCGcGGAGGAGGTGAGGAAGCTGAAAGAACGCGTGGATACTCTTCAGGACCTGGTTCAATCCAGCAGGGCTCACACTAGTCGACTGACTGGAAATAACCTTCACAATCAAAGGTCATCAGCATACATGGACAATGGTCTGGCTACTTCTGATAACACATTGAACCTGGGAGCTACTTCTTTCTCAGACTCTGCGGCCCTGCAGAGAACAATACATAGCCTCCTGCAAAGCGAGCTGCAGTCTGAGACATTCCGAGctAGCCTTGCTTCCTCACTCAAAGGAGAAAGAGGACAGCCAGGGCCTAAAGGTGACGCTGGAGCTCAAGGACCCAAAGGGGATAGTGGTTTCCCAGGGATACCAGGTTCTCCAGGAGCAATAGGGCCCCCAGGACTTGAAGGACCAAAAGGACAAAAAGGAAATGCAGGCGAGCATGGTGCAGAGGGGGCACCAGGATTCAGGGGCCGAGATGGGTCACCAGGGCCGCGGGGAGAGCCAGGTCCTGCAGGCATTGGAGAAAAGGGTGAAAGAGgCTCTCCAGGAGAACCAGGAGTTCGTGGCCCTCCTGGCCCAGCTGGTCCACCGGGTCCAAAAGGTTCAGCAGGTCTTAATGGTTTGTTGGGACCACCAGGTGAACCAGGTCCACAGGGTTTCAGAGGAGAACCAGGCCCTGCAGGACCTAAAGGGGACAGAGGACCTCATGGACCACAGGGAATTAAGGgTGATCATGGTGAAAAGGGAGACCCAGGTGtaccagGTTTCCCAGGGGCTCCAGGAAAACCAGGACTCAATGGTGAGAAAGGAACCAAAGGATCAACAGGGGCTTCAGGTGCAGATGGTGAAAAGGGCCAGAGAGGTGACCAAGGTCCAATCGGGATGCCAGGAATCAGAGGCCCAGCTGGACCACCTGGTGATGCTGGACCTCAAGgaGCTCCAGGGCTTCAAGGACCTCCAGGCATTGCAGGACTTCCTGGACAACCAGGAGTTAAAGGTGAACATGGTGAACCTGGCAGAGTTATCAATGCAGCAGGCTCCAGCTCTGTGGCAATTCCTGGACCACCAGGGCCGCCTGGACCACCTGGACCTGCTGGACCTCCAGGACTGTCAGGCCCTGTTGGTCCTGCTGGAATTCCTGGACAACCAGGTCCTAAAGGTGATAAGGGTGATCAAGGAGAGGCTGGGATCACAGTGGAAAGATCAGAGAAAATTACCTCAGCTAGAGAAAATTCTAATCAAGTTATTCAGGGACCACCTGGACCACCTGGTCCCCCAGGGCCTCCTGGAGCTCAAGGATATGGCACACCTGGTCCaagaggagagaaaggagagaggggAGAGCCAGGGAGCTTTGTGCCCAACTCAGGAACATTTTTCGCTGGACCACCAGGACCACCTGGACCTGCAGGTCCTAAAGGAGACACAGGACCACAAGGACCTAGAGGATACCAAGGGGCTCCAGGTCAGCCCGGACTACCTGGAAGACCAGGGGGATCAGAAGTCAGATTGTCTGAGTATAGTGGTGCTCAAGGTCCTCCAGGGCCACCTGGACCTCCAGGTCAACAGGGCGCTAAAGGGGACAGTGGCATTCCAGGTGCTCCAGGGATCCCAGGAACATCAAGAGGATCTGTCGGGGCTCCAGGGCAGCCTGGACCCCCTGGACCTCCTGGACCACGGGGTTCTCCTGGACACTCTGGATCTACAGACGATTATCGCCGTTTCATTATTGACTACATGCAAAGTGACAGCATGAGACAGCATTTGTCTGGTTTCCAAGGGCCTCCTGGTCCTCCAGGGGCCTCAGTGTCTGTTGAGGAGGTGGCATCTCGGGTTATCGCGTACATTCAGCGCTCTGGATTAAGTGGAGCCCCTGGTCCTCAAGGTCCTCCTGGCCATGCTGGCACTGTATCTGTTAGTgacattattgcattattacaAAGAGATGATGTTAGACGGTATGTAATTGGCCCTCCAGGACCACCAGGACCACCTGGCCCTTCAGGAAGTGTAAATCTAGCCAACTTTGACACACAGGAAGTGGCAAACTATGTTCTGAGAATAATGAATGaTCGAGGGTTGACAAGTAGACCTGGACCTCCTGGTCCTCCTGGCCCACCTGGCCAACCAGGTTCCACCTACAGTGACATCACTGCTTTGATTGAGAGGTCAGGACTTAGAGCAGGTCTTCAAGGTCCTCCTGGTCCTCCAGGAAGACAGGGCCCACCTGGTCCAATTGGTCCCCCAGGAGCCCCAGGCCCTATAAGCTCAGAATACAGAATTGAAGACATCCAGGCTTACATACAAAATTCTGGCTTACGGGGTCCCCCAGGGCCACCTGGCCCTCCAGGACCTCAGTGGCCTGCAGGGGACTCCAGGGCACTTGCATCCTATGACAGAGCCAGTCAGAGAGCACACATTCGTGCTGAGCTTCAGGAGTATCTCAGTAGTGATGCTATGCGGCGGTTCACCTCAGGTCTTCCTGGACCCCCTGGTCCTCCAGGACCCCGTGGTGAAAAAGGGGACCGTGGTGATTCTGGATACAGTGCAGGAGGTGGCTACTACTATGCTACTGACCGTAACGGAGTCAGGTTGGCTGAAGCAGACTACTCCAGTGTTGCTCTGAGAGTCACTGACTATATTCGGAGTCAAGGTCTACTGCAGGaaattaatgataattattGGAGATCTCATTCCATGGGAATCCAAGGCCCTCCTGGTCCTCCTGGTCCACCTGGCCACCCTGGATACAGCCGTGTTTTTGCTGCCTATGGGAACGTCACTGCAGATCTCATGGACTTCTTCAGAACACACGGTACTATTCCAGGTCCACCTGGTAGGGAAGGGCATAAAGGAGAAAGAGGATACCCTGGACCCAAAGGAGAAAAAGGGGAGATGGGAAGACAAGGAATACCTGGTGTTCAGGGACCAAGAGGTCCAGAAGGGCCAAGGGGACAAAAGGGTGAGAAAGGTGAAATCCAGATTGGACGCCGAAGAAGGAGTATTGGCGTGTAAAGGcttatgtttctgttttggtcatctttttctcttcatgGTGGCTCTCAAGTATATAGTGAAGCAATTTAGAAGGAGAAAGCATGTGACATGTATCTTAGCCAAAGTCTGTTCAGCAGGCCTGATGTAGTGCAGTTTCTCAAATAATACACATTATGTAACTTTCAGCATGATATCGAATCCATATTACCCACATTTTCAGTCTTCCTAATTAcagataaaacattttgtatttttcataaatatttttgttgtttgtttaatgtGGATGTAGTTGTACACTTTATTAGCCTACACATTTGGAACACTTAATATTCTTCAGCACTTTTTGAATTGTGTAGCATAAAAATGTTCTTGCACTCCTAACAAATAAGAATGTAATGCAATTTGGCACAATATAAAAGAGCTAACTTTCACAGGACTTTAATGtttcaaaaaaattttattcaaaAGTTTAATATGAACTAAATTTGGAACTTGTTTaccaaatttaataaaatattccatgatttaaatgttta
>XR_003404144.2
AGTAAAACCCAGCCCAGGAGTCCTGCAGAGGCTTGTTGGTGAAAGTGggaagaagattaaaaaaaagttgtagaTGGAACAAAGATAAATACTTGATATCTGTGTGGCAGGAGTGAACTTCACACTTAACCACCAACTCCTATCTGGTCTTCTCAAggaacattttacatttatttgtgcaAAATCAAAACTTTCTCCTGAGTTTCACCTGGACTTCAGCATGGAATGGATGTCTTAACGAGGCAAACAGACGATTCAGGAGGCAGTTCAGGAGAGAGAGTTATAACTGAAACAATTTCGACAACCAGACTCACATCATTACCACCAAAGGGCTTCAGTGGATCTAGCAGTAAGAGCATGAGTAACAGCTCTTGGGGAAGCGGCTTCGAGAAGAATATTCTAAACCAAAACAGCAGCACCTCCTACTTGCCATCCTCCTCAGTGGGTGTGAATGCAGGAGGATCAGAGTTAGACTATGCCCTGTTTCTGGGAGATGACTCCACTGGGACTAGAAGAAGTGGAGTGGGACGTGGAGGCACTGCAGGATTTGAAAGTGTATCTGGAAAAGACTCTGGGTCAAAGAGCAGGTCCAGCTCCTCAGGGGGCTTGAGACGGACACAAGGTTCATCCTCCTCCATTAGCCACTCCCCCATTTTCTTGGAGAGAAAAACTACCATCAGTCACTCAGGAGGTTATGACGGAAGTTCAAGCGCCAACTCATCACCAGAGCTCACGAGGAAGGACTATGGCTCATCTAGAGGAAGGTCCCAAACCAGAGAGAGTGAAATCAGGGTCAGATTACAGAGTGCATCTCCATCAACCAAATGGACAGAGCTGGATGATGTGAAGAAACTTGTGAAGAGTGGACGATCGTCAAGTGTCAGCCCCACCCGCTCCACAGCCTCCTCCACCCTGCCTGTTCCACGCAAAGCTAAAGTCGAGACCAAAATCATTAAACAAGGCAGTCAGACTGTCTCAGGGCAGTATGACACCACTATTCTGGACTCGGCTCTTCCGTCGTATACATGGACCAGCTCCACACTGCCCTCTAATGCTTCCAGCACTACTGCTTTTGCTTATCAAAGCAGCACCAATAACATGTCACCAGGATCTTCTCTTTTAAACACCACTTCACCTTCCTCACTGTCAGtgtATGGCTTCCAGAATAATCTTGCCACGCCATCTAGTACACTTCTCACATCAAATACAGTTAACACACATTCGGGATACGGTGTGCAGAAAAACATTTCTCAGAGCATCGGTAGCTCTGGTCTTGTTAGTACAGGAGTTTCTACTTCTACAGGCACAACTACACGTTCTGTTAATGATGACATGCCACGAAAATATATTATACTTGAGAAGGAGAATATTCCttcaaaaaaggaaacagaagTGCTCATTCTGTCAAAGGACAGTGGGAAGCAGTTCTCCAGCAGCAGCACATCTAATGGAAAAGGAGGGTCTGTTTCGGATGTCTCACTGAAGAAGGAGACCATGGCAAGCAGCTACACTGAGACAGCTCCTGTCAAATTAAGTTCAAGCTCCTACTATGGAGCTTCATCAGTCCCTACCAAAGATAAGGCTACATACGCAGAGATCTATAAGGAGAAGGGTGATGGAAAAGGAGGAGATGGCTGCTTTGGCTGTGGTCCGAGCTGCTGCTCCTGGTGGAAGTGGCTGCTTGGACTGCTACTCAGTCTTCTGTTGCTCCTCGGCCTCCTTTTTGGACTCATCGCTCTCGcGGAGGAGGTGAGGAAGCTGAAAGAACGCGTGGATACTCTTCAGGACCTGGTTCAATCCAGCAGGGCTCACACTAGTCGACTGACTGGAAATAACCTTCACAATCAAAGGTCATCAGCATACATGGACAATGGTCTGGCTACTTCTGATAACACATTGAACCTGGGAGCTACTTCTTTCTCAGACTCTGCGGCCCTGCAGAGAACAATACATAGCCTCCTGCAAAGCGAGCTGCAGTCTGAGACATTCCGAGctAGCCTTGCTTCCTCACTCAAAGGAGAAAGAGGACAGCCAGGGCCTAAAGGTGACGCTGGAGCTCAAGGACCCAAAGGGGATAGTGGTTTCCCAGGGATACCAGGTTCTCCAGGAGCAATAGGGCCCCCAGGACTTGAAGGACCAAAAGGACAAAAAGGAAATGCAGGCGAGCATGGTGCAGAGGGGGCACCAGGATTCAGGGGCCGAGATGGGTCACCAGGGCCGCGGGGAGAGCCAGGTCCTGCAGGCATTGGAGAAAAGGGTGAAAGAGgCTCTCCAGGAGAACCAGGAGTTCGTGGCCCTCCTGGCCCAGCTGGTCCACCGGGTCCAAAAGGTTCAGCAGGTCTTAATGGTTTGTTGGGACCACCAGTGAACCAGGTCCACAGGGTTTCAGAGGAGAACCAGGCCCTGCAGGACCTAAAGGGGACAGAGGACCTCATGGACCACAGGGAATTAAGGgTGATCATGGTGAAAAGGGAGACCCAGGTGtaccagGTTTCCCAGGGGCTCCAGGAAAACCAGGACTCAATGGTGAGAAAGGAACCAAAGGATCAACAGGGGCTTCAGGTGCAGATGGTGAAAAGGGCCAGAGAGGTGACCAAGGTCCAATCGGGATGCCAGGAATCAGAGGCCCAGCTGGACCACCTGGTGATGCTGGACCTCAAGgaGCTCCAGGGCTTCAAGGACCTCCAGGCATTGCAGGACTTCCTGGACAACCAGGAGTTAAAGGTGAACATGGTGAACCTGGCAGAGTTATCAATGCAGCAGGCTCCAGCTCTGTGGCAATTCCTGGACCACCAGGGCCGCCTGGACCACCTGGACCTGCTGGACCTCCAGGACTGTCAGGCCCTGTTGGTCCTGCTGGAATTCCTGGACAACCAGGTCCTAAAGGTGATAAGGGTGATCAAGGAGAGGCTGGGATCACAGTGGAAAGATCAGAGAAAATTACCTCAGCTAGAGAAAATTCTAATCAAGTTATTCAGGGACCACCTGGACCACCTGGTCCCCCAGGGCCTCCTGGAGCTCAAGGATATGGCACACCTGGTCCaagaggagagaaaggagagaggggAGAGCCAGGGAGCTTTGTGCCCAACTCAGGAACATTTTTCGCTGGACCACCAGGACCACCTGGACCTGCAGGTCCTAAAGGAGACACAGGACCACAAGGACCTAGAGGATACCAAGGGGCTCCAGGTCAGCCCGGACTACCTGGAAGACCAGGGGGATCAGAAGTCAGATTGTCTGAGTATAGTGGTGCTCAAGGTCCTCCAGGGCCACCTGGACCTCCAGGTCAACAGGGCGCTAAAGGGGACAGTGGCATTCCAGGTGCTCCAGGGATCCCAGGAACATCAAGAGGATCTGTCGGGGCTCCAGGGCAGCCTGGACCCCCTGGACCTCCTGGACCACGGGGTTCTCCTGGACACTCTGGATCTACAGACGATTATCGCCGTTTCATTATTGACTACATGCAAAGTGACAGCATGAGACAGCATTTGTCTGGTTTCCAAGGGCCTCCTGGTCCTCCAGGGGCCTCAGTGTCTGTTGAGGAGGTGGCATCTCGGGTTATCGCGTACATTCAGCGCTCTGGATTAAGTGGAGCCCCTGGTCCTCAAGGTCCTCCTGGCCATGCTGGCACTGTATCTGTTAGTgacattattgcattattacaAA

Function

NR:

description
PREDICTED: collagen alpha-1(XVII) chain-like isoform X1

GO: NA

KEGG:

id description
K07603 COL17A, BP180; collagen type XVII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937794.2 True 5249 mRNA 0.49 55 12982421 13005323
XR_003404144.2 False 3669 misc_RNA 0.51 46 12982406 12999962

Neighbor

gene id symbol gene type direction distance location
cfap43 cfap43 coding upstream 1028 12957156 ~ 12981378 (+)
adam8a adam8 coding upstream 53352 12920496 ~ 12929054 (+)
msx3 msx3,LOC108263347 coding upstream 70792 12909723 ~ 12911614 (+)
fuom fuom,LOC107676595 coding upstream 107421 12871072 ~ 12874985 (+)
echs1 echs1,LOC107601864,LOC107743519,LOC107676592,LOC107666378 coding upstream 113954 12863910 ~ 12868452 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding downstream 29337 13034660 ~ 13039337 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding downstream 34884 13040207 ~ 13055375 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding downstream 224339 13229662 ~ 13236979 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding downstream 289909 13295232 ~ 13310269 (+)
LOC113543512 gsto1,LOC100304822 coding downstream 309272 13314595 ~ 13317625 (+)
G45376 NA non-coding upstream 112183 12870003 ~ 12870223 (+)
G45360 NA non-coding upstream 161017 12820856 ~ 12821389 (+)
G45351 NA non-coding upstream 171156 12810919 ~ 12811250 (+)
LOC117596851 NA non-coding upstream 243180 12733432 ~ 12739226 (+)
G45170 NA non-coding upstream 307783 12674408 ~ 12674623 (+)
G45459 NA non-coding downstream 6623 13011946 ~ 13017600 (+)
G45473 NA non-coding downstream 46917 13052240 ~ 13052529 (+)
G45508 NA non-coding downstream 90348 13095671 ~ 13095881 (+)
G45592 NA non-coding downstream 306354 13311677 ~ 13312080 (+)
G45594 NA non-coding downstream 307671 13312994 ~ 13313221 (+)
spef1 spef1 other upstream 45104 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 339102 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 346000 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 1215992 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 1237182 11682864 ~ 11745224 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 26727 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 492725 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1208046 14213369 ~ 14286542 (+)
cgas NA other downstream 1356044 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1967245 14972568 ~ 14974068 (+)

Expression


Co-expression Network