vox (ventx)


Basic Information

Item Value
gene id vox
gene name ventx
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11327629 ~ 11328847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937905.2
CTTCTAGGCCTTCACAACACTCTTGGGACTTTCACTGGATACACCTTGGAACACCTCGAGCTGAAACATGGTGAAAAACTTTTCCGTGGACTGGCTTGCCCAGAGCTATCACGACTCCAAACAGGATCTGGACCCAGTGGAGACTTCTCAGGCTCCTGTAAGGCGACATGTGCCTTGTCTGGTCCAGCCGCGGCCTCCCACCTCTTACGACAAGGTTTACCTTCAGCCCAAACTGAAATGTAGCCGGATTGAGGAGAACACAAGCACAGAGGAacagaaggagaaggaaggcACTGTGTTTACGCACTCAGCGCAGAGAAACTGCACCTCTCCAAGCTCTTCAGAGAACAGCGGTTACTCTTCTGGGTATGAGAGCGAGGCCGCTGCGTCTGAGTGTCCCTCCATTGAAGACGGaagtgagggggagagagatggaggcgCCCAGCGCAGAATCAGGACCAAATTCACTCCAGAGCAAATTGAGAAGTTGGAGAAAATCTTCAGGAAACACAAATACCTGGATGCGAGTGAGAGGGTTAAAACCGCACAGAAGCTCAACCTATCCGAAACTCAGGTTCGGACTTGGTTTCAGAATCGCAGGATGAAACTGAAGCGTGAGGTTCAGGAGCTGAGGGCTGAATACACTCTCCCCGCTTTGCCCCACGTCCTCTTCCCAGCGGTTCCTTCGCTTCCCTTCCACTACGGCGGACAGCGCGTGACTTTCCCCGCAGCTCCTCACGTGCCAAACCCGCACGTGATCCCAGCCATCCCTGTTCATCACCGCGCCATCCCGCACCAGCAGATCATTCCTCAGCACAGCCACCACATGATCCCCATGCAGCATTACTACTAGACTTCACAAAATACCATGGAGAATATGTGGACACTTGCATTCTTTTTTACTGTTGACGTGCAACATACATGATGTACAGTTTTGTATAGAGAATTATCAAGAAATTTGTATAGAGTTTTATggtaaaaagtttatttattga

Function

symbol description
ventx Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
homeobox protein vent1-like

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937905.2 True 995 mRNA 0.50 3 11327629 11328847

Neighbor

gene id symbol gene type direction distance location
vent NA coding downstream 3286 11322720 ~ 11324343 (-)
blnk LOC108263522 coding downstream 232675 11054768 ~ 11094954 (-)
ccnj ccnj,LOC107562385 coding downstream 286328 11037969 ~ 11041301 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding downstream 317263 10982594 ~ 11010366 (-)
march5 march5,LOC107719203 coding downstream 400401 10894351 ~ 10927228 (-)
LOC113544651 kndc1,LOC104962727,LOC107573641,LOC107373061 coding upstream 2117 11330964 ~ 11372987 (-)
LOC113544831 adgra1 coding upstream 61028 11389875 ~ 11566240 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding upstream 266383 11595230 ~ 11650202 (-)
valopa LOC100305024,LOC108426856 coding upstream 443160 11772007 ~ 11786635 (-)
LOC113540195 inpp5a coding upstream 488881 11817728 ~ 11973505 (-)
G44275 NA non-coding downstream 347334 10978646 ~ 10980295 (-)
G44274 NA non-coding downstream 349206 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 371137 10953505 ~ 10956492 (-)
G44262 NA non-coding downstream 402371 10922309 ~ 10925258 (-)
G44173 NA non-coding downstream 510337 10816672 ~ 10817292 (-)
G44582 NA non-coding upstream 58359 11387206 ~ 11387946 (-)
G44818 NA non-coding upstream 510605 11839452 ~ 11839822 (-)
G44820 NA non-coding upstream 583363 11912210 ~ 11914029 (-)
G44848 NA non-coding upstream 678979 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 912762 12241609 ~ 12242121 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1166106 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 1319068 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 2098745 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2473835 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2543831 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 379767 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 682084 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 815993 12144840 ~ 12152522 (-)
nin nin other upstream 1106262 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1195789 12524636 ~ 12534215 (-)

Expression


Co-expression Network