rin2 (rin2,LOC105893488)


Basic Information

Item Value
gene id rin2
gene name rin2,LOC105893488
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14296334 ~ 14328299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937917.2
TGAGATTGTTGTTGCCGGGAGAGGTCGCATGCGCTGTCCAAGTGAAAACACTCTGGTTATGGAAGAGCTCTTTCCTGTAGACTAGAAGAGGAACTCCTCCTAGCTTGGTTCTGGAGCGAACTCCCAGCGTgacagagaagtatgtgttGGGGTTGGAAAGCTGTGCTGTGAGCGGCGTGTAGTTGTTTTCCGGAGTTCTGGTGTTTTGTGTCCGACCATCGCTGAGAGCCCTGGCAGCAGCACACAGCGGAGCAGGCAGAACGCCAGCATGGCCGCAGACGCGTCGGTGAAGCCCTGCCAGATGGACCGCAGTGGCAGCTTCTTTAAGcTGATAGACACATTTTCCACTGAGATCTCAGAGCTGAAACAGGAGATGGTTCAAACAGTTAGAGAACCAGACACAAAGCTCCTACAAGGgcTGGAGGGGGAGGTGAGTGGCCTGTTCCTGCAGTCGTCAGTCTGCACTGGTGCAGCAGGGGTCCGAGACTCTGGCTATGACTCTCTACGCCGGCGCATGAGTGTGCTggacagactgacacacacacactcggtcTGGCTTTTACTGCAACTCAACGATGAAGAAGCAAAACGCATCCTGCAGCCTCAGCCACCAGGGACATTTCTGGTGAGAAGGTCGTCTAAACACCAGAAGAAGGTGATTTCCCTACGTATGGATGCAGACAGTGTTCCAGTGACTGTGAGGGACTTCCCAGTCATAGAGAGCCAGTACAccttCTCCTTGGAGGGGTCAGGGATCAGCTTCGCCGATCTCTTTCGACTGGTGGCTTTTTGCTGTATAAGCAGGGATGTTCTCCCATTTACGCTGAAGCTTCCTGAGGCGATCTCTGCTGCAAAGACTACTACTGATCTAGAAGAAGTAGCCAAGTTAGGAATAGGGTTCTGGGACTCTAAACTGTTTCAAAAGAAGAAGAGCTCCGTGACTGATGGATCGGCTGTCCAGCAGAGAGTGAAGCAGGCGGTGCAGAGGACATCCCTTGGAGACAATTTGACACCCGTCCCTCGCACTCGAACGCCATCCCAGCTGGAATGCAGTCAGTCAAACGGGGCTCTGTGCTTCATTAACCCTCTCTTCCTACAGACACATTGCTCTGAACCTGCTTCCACAGAGACTGACACCTCAGCAGCATCTGGAGAAAACTGTGCACTTTCACAGAGCAGCAGCTCCTCTACTCAGGGCAAAAGCCATACAAGGCCTCAGAGCATCCTTCGCCGAGCGATCAGTGCAGAACACACCAGAAACAAGGGCGTAAATAGAGAAAAAAGTTTGTCCCGCTCCCCTCCACCCCGACCACCCCCACCCCGCACCATTCCGCATAGACCAGCCGTCCCAGTCAAGCAGAAGAGCATGCCTGAGACTGGCGTCAGCTGGATCAAAATGCCCCAGGAGAAAACTGGCCTGCTGGGGCGCCTGAGTTCCTCGTTCAGCTCCCTCTCACCCTCGTCCTCGCCACCCAAGAAGATCAGCTCACCCATTCCCATGCCGTCTTGCCGCGGAAAAAGAGCTCCCAGTATGCCTGATGCAGGGGCTCAGCTCTGCCACCTGGCACTGGAGGACCAGTTCATTGAGCAGGCAGTGTCTCAGAGCCTGGCCAAGCAGGCGCTGAGGAACGCAGCCGTGGAAAGCAGAAGCCCTGCAGAGGAGGGCAGCCCCATGGGGCGAGAGAGACTCAGTGACATTAGcatctccacctcctcctctgacTCTCTGGACTACACTCATAGCTTCACACTGCCAGCAGCAGCCAGCCCCGCCAGAGCTGACAGCAgcctggaggaggaggaagaagaggaggaagatgatggCGTTGGTGTGGAGAGTGATCAGGACCTGAGCATGGAGCCACCCTTCAAGCCCAAGAAGCGGCACAGCGCTGGCACGTTTGTGCTGCCGCGGGCACTCAAAGGACATCTGCGTAAGGTCAGCGACGTCTTTAACTCGCTCATGACACCTGAAAAAAGAGCAGTCAAAAGGATTGTAGAGCAGTCCCAGAATAAAGGCACCTACTTTGGCTGCCTGGTGCAGGACTACATGAGTTTCATGCAGGAGAATTGCAGCTGCCATGAATCAGGCCTTGAGCTGCTGCAGACCGTCCGGCAGTTCATGACTCAAATGAAATCCTACCTGCTGCAGAGCTCCGAGCTCAACCCTCCCATTGAGTCCCTCATTCCAGAGGACCAGATCGATCAGGTACTGGAGAAGGCCATGCACAAGTGCATCCTGAAGCCTCTGAAACCTGTGGTGGAGGCAGCTCTGCACAATTTCCAGGTGAGCAGTGGAGTCTGGCAGCAGCTGAAGGAGAACCTGGCTCTGGCCAAAACCAAGCAGCCGCAAGAGATGGGTGTAGACGGAGCCATGCCACCGGACCCTGTGGCCATAGAGAAGATTCGTCATAAGTTCCACAATATGAGCAAGATGTATTCACCTGAGAAAAAAGTGTCACTACTGCTCCGTGTCTGCAAGCTCATTTATACTATCATGGAAGACAATTCAGGGAGAATGTATGGGGCGGATGACTTCTTACCCATGCTGACATATGTGTTGGCTCAATGTGACATGCCTGAGCTGGACACAGAGATTCAGTACATGATGGAGCTACTGGATCCCTCTCTGTTGCATGGAGAAGGTGGATACTACTTGACTAGTGCATATGGAGCCATGTCTCTCATTAAAAACTTCCAGGAAGAGCAGGCTGCACGGGTGCTGAGCTCAGAAACCCGTAACACACTCCACCAGTGGCACCGCAGACGCACAGCTCAGCGCAGCACACCATCCGTGGACGACTTTCAGAACTACCTAAGAGTGGCACTCCAGGAACCAGACAGTGGTTGTACAGCTAAAACTCTGCAGGTGCGACCATACGCTACCACAGAGGAGGTGTGTCAGTTATGTGCTGAAAAGTTCAAGGTGCATGACCCTGACAACCATGCCCTGTTCCTGCTGACAGAGGACAGCACGCAGCAGCTCGccccagacacacacccacaaaagaTCAAAGCAGAGCTGCACAGTCGCCCACAGGTTCAGCCGTTTTACTTCGTCTATCGCCGGATACAGAACCTCAGCCTCACTGCTCCAGCAGATGAATTCAATGGCAACTCAGTGCCTGTCTGAGCCTGAAGCCTGTGAAGCCTGTTTATCATGCATTTCCTCTCTTACCTAATTACTGCAAGTTTTTTTCACAGCACCACAAAGCCAACTATGctgttttggaaatgtttgCATCTGAAGGAAACGGAAAATGATGCTGGGCCCtgaggaaagaaggaaggaaggatgtgTCTGACAGATGCTGCATTTTCAGctcttctttgtctttttttaatcttttgggAACTGGAACGTGAGCATCACATTTGAGGAAGCTACTTTTATGTTgtatacaataaaaaaagagttATGCAAGAGAGCTGATGGGAAGGTTTAGTATGAATGTGCATGTTCATAATGGAGCGAGGCCTGTTTAATAGCTGTTTCAAGTTTTTCTATGCTGAGGATATTCCATAGTGCTTCAGTATAAATAATGCAGTGCTCTGTAtgactgctcttttttttaaagggcaAAATGTACTGGATATGTTTTAAATAGCCTGCTAATGCTCATATGGTGGCTGGCTTCAGGAAGCTGCTTAGCCCATAGTCTGACATGTCATGTAATATGAGCAACTCCACTGCCAAGGACATGGAGGAATTGATATCTATATCAGACTTTACactttgcatttttatatactGAAAACctaattttttaacattttttaaaacagtttttatgCAGTTGCTGGTAAACTGCTTTCTTTTTATGTATGAAAAATCATTAGTATAATAATGCATGCATTTGTTGGTTAAGAATATCAACTATGAACCAGGCATTGTTGCCAGTGATGTTTTACCATATGCGTATTTGTGTGAATGAAATCGTATGAGTCAGCGCTGGTAGTCAATCCGTAGTCCACAAACATGTTGTTTATGCTCCCATCCCTgttaatttataaaacatttttggaatGAAGATATATCTAAGTAAAATCTTGAATCCAAGTTGTAGAGAATACTGTACTACTGACAAGCTAAAGGCTTGTGTGTGAATAATTCTGAGCTGCATCTCAGTGGTTTATGGTCCTTGCTGGCAAGTTTCTGAAAGTGTGCAGTGGAACAGGAAGGTGGTTTGAAAGTGAGCAGGTTACAGGAGTAGAATGTAATGTTCAGCAGAGAAAGCAGGAAGGATTAGCTGAAAGGTCATACAAAGAATGGAATTATATTTAATGGAAGAACATCTCAAGCAGTGGATTTTATACACGTTTTACTGTAAATTCTGATCAGGTAACAGTTGactaaattgtgtttttttttgtttgtttgtttgtttttgtttatcatAAGTGTATGCCTAACTACAAAGAATGAGATTTACCAAGTGTGTGATTTCCTGTTAAAGTGCTGTGCATTTTTATGTCTGGACATCAATGGTAGAAATGTTAAAGATTGATAAGTAGGCTGTCTGGTAAAATGAGACCAGATCAATGCAATACGCTAACCCCTGTAGCATTGACAGAAACAAGTCATGGCAGTCAGGAAAAACATAAGACGTGATGTTAAATTGTCTTTTAAGtctaaatatataatgtaaatgtgatttttaactAGATATTTTAAGGTTgataagtatatatttatacgTGATCTGTGCAGGGAttatcacagatttttttttttttttttgaaaaaaagaaaacctctgaattcaaatgtgttaaaatgtattatattgcAAATGTTTCACTACTAGCACTCCCATAAGTGTAAGTTTTTTATGTGGCATTTATTCATGAACAATACTATTTTGCacacaataaaataagaatatataca

Function

symbol description
rin2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RIN2 (Ras and Rab interactor 2).

NR:

description
ras and Rab interactor 2-like isoform X1

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937917.2 True 4891 mRNA 0.47 12 14296334 14328299

Neighbor

gene id symbol gene type direction distance location
si:dkey-187a12.4 LOC108263835 coding upstream 3471 14289382 ~ 14292863 (+)
soul2 NA coding upstream 99260 14193834 ~ 14197074 (+)
fancl fancl,LOC107585345 coding upstream 239871 14035638 ~ 14056463 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 662856 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 866074 13419948 ~ 13430260 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 3193 14331492 ~ 14341288 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 18298 14346597 ~ 14351235 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 266903 14595202 ~ 14611970 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding downstream 330457 14658756 ~ 14672999 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding downstream 529630 14857929 ~ 14871099 (+)
G46217 NA non-coding upstream 8047 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 112688 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 113141 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 399799 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 406485 13889279 ~ 13889849 (+)
G46337 NA non-coding downstream 59730 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 289309 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 637607 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 685824 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 751514 15079813 ~ 15084310 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 9792 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 795284 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1261984 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1291011 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1359032 12929559 ~ 12937302 (+)
cgas NA other downstream 33068 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 644269 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1465107 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1742415 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1796328 16124627 ~ 16134002 (+)

Expression


Co-expression Network