galnt2 (galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534)


Basic Information

Item Value
gene id galnt2
gene name galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9001659 ~ 9095683 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938070.2
TATTCGCTTTTAATGAGCTCCGTGCTCGCTGGTTTGCTCGCAGGcggtggatgtggatgtggatgtcgCCGCCCTCCTCCGGCTGCTCTGCCGCGTGTGATTGGGTTAAAGTCGGCTCCCCTTTCCCCTCTAACCCGGTGATGTTGGCCGTTTCCTGCCTCTTCTGCCCAACTAGTGGTAGACAGAGAGTGCTGAAGCTCCGGTGAAGCACATAGCCTGGACGAGCGGGTGGCTTTAACAGCAAAAACACGAAGCCATCCAGTGCAGCAGCGCGTCCAGACCTGCAGCCATGCGAAGGAAATCGAGGATATTACTATGTTTCGCTGTGCTGTGGATCCTCGGAATAgcgtattatttttattcaggaACAACGCTACATCGAAAGGATGACTGGAGTGGCTTCAGTTCGAGCAGAATTCAAGCACACAGCAATGCAGACAGCAGAGCTCAGAGTTTGGAAACCCTTCCCCCAGggAAGGTCAGGTGGCAGGACTTTGATCAGGACCTGTATGTGGGGGCGACGGTGGTGAAGCCGGGACAGGATCCCTACGCCCGAAACAAGTTCAACCAGGTGGAGAGTGACAAACTGCGAATGGACCGCGGTGTCCCCGACACCAGACACGACCACTGTCGCCATAAGCAGTGGAGGACGGATCTGCCTGCATCCAGTGTGGTGATCACGTTCCATAATGAAGCTCGCTCTGCTTTATTACGCACCATAGTCAGTGTTCTGAAGAAGAGTCCTCCCCACCTCGTCAAAGAAATCATCCTCGTAGACGATTACAGCGACAACCCTGAAGACGGGGCCTTGCTCGGGAAAATCGAGAAAGTCCGGGTTCTTAGAAACGATAGACGTGAAGgtctgATGCGATCACGTGTCCGAGGAGCAGATGCAGCCACAGCCAGTGTCCTCACTTTCCTGGACAGCCACTGTGAGTGTAATGAACACTGGCTAGAGCCTCTCCTGGAGAGAGTTGCTGAGGACAAGACGCGTGTTGTCTCACCCATCATAGATGTCATCAACATGGACAACTTCCAGTATGTGGGAGCGTCTGCAGATCTCAAAGGAGgTTTTGACTGGAATCTGGTGTTTAAGTGGGACTACATGACGTTGGAGCAGAGACGGGCGAGGCAGGGGAACCCCATTGCTCCTATCAAGACTCCTATGATAGCTGGTGGCCTCTTCGTCATGGACAAAAGTTACTTTGAGGAACTCGGGAAATACGACATGATGATGGACGTGTGGGGTGGAGAAAATCTTGaaatCTCGTTCCGGGTGTGGCAGTGTGGTGGCAGTCTGGAGATTATTCCCTGCAGTCGAGTGGGACACGTGTTTAGGAAGCAGCATCCTTACACATTTCCTGGAGGCAGTGGCACCGTGTTCGCCAGGAACACCAGACGAGCAGCAGAGGTATGGATGGACGATTTCAAGAATTTTTATTATGCTGCTGTACCTTCTGCAAGGAATGTGCCCTATGGCAATATTCAGAGCAGGCTGGAAATGAAGAAGAGATTAGGCTGCAGGCCATTTAAATGGTACCTGGAGAACGTGTACCCAGAACTCAGGGTCCCTGACCATCAGGACATTGCATTCGGGGCTCTGCAGCAGGGCGGGAACTGCCTCGACACGCTGGGCCACTTTGCCGATGGTGTGGTGGGAGTCTACGAGTGCCACAACGCAGGGGGCAACCAGGTAGCATTCAGATCTCAGGAGTGGGCCTTGACTAAAGATAAGTCGGTGAAGCACATGGACCTGTGTCTGACTGTGGTGGAGCGCATGGCAGGATCTCAGATCAAACTGCAGGGCTGCAGAGAAAACGACAGCAGACAGAAATGGGAACAGATCGAGAACAACACTAAACTGCGACACGTGGGTAGTAATCTGTGCCTGGACAGCCGGAGCGCCCGTAATGGGGGCCTGACGGTGGAGGTGTGCAATCCCTCTCTCACTCAGCAGTGGAAGTTCACCCTCAACCTGCAGCCCTAGTCCCTAGCCCCTACGTCCTGCGTCCTTGGCGGGTCACAGAGCAGTGTGCGGTCTTTGAGAGAACGCTGCCCAGCCGCAGTGGGTCTGCTCGCCCCTTCCCCCTCACCCAGGGCTATGGGGccaaacagacacaaaaacaaacacaaaaactttTTTCCATCCAACTATATACCtcaccattttatttttggtcCAGCTCTTAATTGAAATGCATAGGATTTGaggtattttattttcttcctatTTCTGATGCCAGCCAAATGGATTTAATTTTTGTTGcccttctttttctcattttttcatctttttttttccttaggattttttttaattaatcaaatttgtgtttgtttcatgtAACCAATAATGTTGAATGTAAGTGACGCTCCACAGAGGCTTCTTTCGCgattgggaaaaaaaacgagGACCTTTCCTGTTTAGTTCCACCTTCTTAGCCCagcacaggagtgtgtgtgtgtgtgtgtgagagagagagattctgcAGGCCTCAGTTTGTGTGAACACTGTGTACAGTCTgttcaacaaacaaacaaaaaaataatcagaggCCAGCTTTGTCTTTTCCCCCCTGCAGCTTCTAACAAATTGTCATTCTATCTATTTTGCATCTTGAATGTGCAATGAAGAAAGTTCTGTTTCCTCTTTGAGCCTCGAGAGTGTTTTGGTGGAGAAACAACAGGACACCATGTAGTGCTCTGCGCTACCATTCAGCGTCGGTTGCCTTTGTCACGAAATGGACAATAAGGTGtacttttgtttatttccataATCATCACATTGTCCTGTCATGAGGATTTCTTGATTCAAGTCATAATTTGTAGCTGCATTACGTAGAATCATTCCATTGACGAGATGGTAACTGTAACCGTGTACTGTTTCAGTCACTTtgatatgaaaatgtatttgtgcATTATGTTAGGGTCAGCGTGTGGTCACTGTGATCAACCCGAATCCCAGTGGCAGGACCTGCTCAAGTTTTGATCATGGGCTTCCCAAaacaagagagaggaaatggtTTCAGATGGTTTAATTTGTGTATTGcacattatattttacttgatttcttgttattttattgtttgtccTTCAGTTGTTCAGTGATTTAGGTTAACTGCCTTTGACTGTATCCATGCTACTGTAAACAGAAAGAGTACCTGTGCTGTGCAGCTCTCAGTCAGGGCTGGAAGTAGCTGGACCTCAACTGGACTCTGAGAGAAAAACCTCCATGCCGTAGGtgtgcatttctctctgttaTACATCCTCCATACTTTTATGCTTTCTTTCATCAACTAGATCATGACGTTCATTATGGTACTTCACACAGTGCTGTGGTTCTGGTTAGTCTGTTATAAAGGATGCAAACAGATGAACAGAGAAGCTTTGATTAtagttccattttttttttattatttttttttacattggtgtgtgtgtctgattgaGCATAGCCCTGTAGCGTAATTTATTCTAGATTAGGACACATACTGATGAGTCTCAGATATACTGTATTCACCATTTTCACTTTGTTCCTGAGTATTTTTGACTCCACTACATCACCCTGTATTTGTCCAGCTACAGGGAATCTTTTCCACACGTCCTTGGAAATGAATCTAAGGACACTAAGACAAGTTGAAGCCTTGTTGGCTTTGAGTTCATCAGTGACACTCTGGCACGAGACTGACTGAATCAGGATAAAAACCCGACCTGCGTGTGTTTCATTCCTTGTGTCTGGAGTTGAAAAAGTCAGACATGATGCTCTGCTCTAAATAGAGGGGCTTTTTATAGATGGCAAATGAAAGTACGCACGTGTTGAGTTTCACTGGTGAAATACAACTGCCTATGATCATTTTGCCATTATTATGCCAACATTTGAGCAATTTTGTACATTCTGGAAAGAAACCTTTATatgatgtcaaaaaaaaaacctagggCCAAATTGTGAGAAATCCATTGCTTATGAATCTGAATTggaataaatgtttacataGTACACTGTGCCAAAGTTATTTCCTGTTGGGTTAAGTTGTCTCAGCGTACTTCAAAACTAGAACATTGACAGAAATCATGACCCCATATTTCCCCCAGTTTGATTTTGATTACACAGTAAGGAAAAGGCAAGGGAGATGTGACGGGGTCACCAGTTTTaaaagtgtatatgtgtgtatatacaatcTGTATGTCCATGCATGTACATATAAACGCGTACAATTGCAGTTACTAGTGATTTGGTTAACTGTACAGCGCTTCTATTTGTCCTTTTGTTTTATAGATATGGTGAAAGGTTTACTTTgaatgagaaaataattaacttaaataaaagtttatatataATCAGTTGTGTTAAATGTAAAGTGTCTGTGAATAAAATCACTGGGTGAATGTGTGATTTGAAGTGATCTACC
>XM_026938078.2
TTCGCTTTTAATGAGCTCCGTGCTCGCTGGTTTGCTCGCAGGcggtggatgtggatgtggatgtcgCCGCCCTCCTCCGGCTGCTCTGCCGCGTGTGATTGGGTTAAAGTCGGCTCCCCTTTCCCCTCTAACCCGGTGATGTTGGCCGTTTCCTGCCTCTTCTGCCCAACTAGTGGTAGACAGAGAGTGCTGAAGCTCCGGTGAAGCACATAGCCTGGACGAGCGGGTGGCTTTAACAGCAAAAACACGAAGCCATCCAGTGCAGCAGCGCGTCCAGACCTGCAGCCATGCGAAGGAAATCGAGGATATTACTATGTTTCGCTGTGCTGTGGATCCTCGGAATAgcgtattatttttattcaggaACAACGCTACATCGAAAGGATGACTGGAGTGGCTTCAGTTCGAGCAGAATTCAAGCACACAGCAATGCAGACAGCAGAGCTCAGAGTTTGGAAACCCTTCCCCCAGggAAGGTCAGGTGGCAGGACTTTGATCAGGACCTGTATGTGGGGGCGACGGTGGTGAAGCCGGGACAGGATCCCTACGCCCGAAACAAGTTCAACCAGGTGGAGAGTGACAAACTGCGAATGGACCGCGGTGTCCCCGACACCAGACACGACCACTGTCGCCATAAGCAGTGGAGGACGGATCTGCCTGCATCCAGTGTGGTGATCACGTTCCATAATGAAGCTCGCTCTGCTTTATTACGCACCATAGTCAGTGTTCTGAAGAAGAGTCCTCCCCACCTCGTCAAAGAAATCATCCTCGTAGACGATTACAGCGACAACCCTGAAGACGGGGCCTTGCTCGGGAAAATCGAGAAAGTCCGGGTTCTTAGAAACGATAGACGTGAAGgtctgATGCGATCACGTGTCCGAGGAGCAGATGCAGCCACAGCCAGTGTCCTCACTTTCCTGGACAGCCACTGTGAGTGTAATGAACACTGGCTAGAGCCTCTCCTGGAGAGAGTTGCTGAGGACAAGACGCGTGTTGTCTCACCCATCATAGATGTCATCAACATGGACAACTTCCAGTATGTGGGAGCGTCTGCAGATCTCAAAGGAGgTTTTGACTGGAATCTGGTGTTTAAGTGGGACTACATGACGTTGGAGCAGAGACGGGCGAGGCAGGGGAACCCCATTGCTCCTATCAAGACTCCTATGATAGCTGGTGGCCTCTTCGTCATGGACAAAAGTTACTTTGAGGAACTCGGGAAATACGACATGATGATGGACGTGTGGGGTGGAGAAAATCTTGaaatCTCGTTCCGGGTGTGGCAGTGTGGTGGCAGTCTGGAGATTATTCCCTGCAGTCGAGTGGGACACGTGTTTAGGAAGCAGCATCCTTACACATTTCCTGGAGGCAGTGGCACCGTGTTCGCCAGGAACACCAGACGAGCAGCAGAGGTATGGATGGACGATTTCAAGAATTTTTATTATGCTGCTGTACCTTCTGCAAGGAATGTGCCCTATGGCAATATTCAGAGCAGGCTGGAAATGAAGAAGAGATTAGGCTGCAGGCCATTTAAATGGTACCTGGAGAACGTGTACCCAGAACTCAGGGTCCCTGACCATCAGGACATTGCATTCGGGGCTCTGCAGCAGGGCGGGAACTGCCTCGACACGCTGGGCCACTTTGCCGATGGTGTGGTGGGAGTCTACGAGTGCCACAACGCAGGGGGCAACCAGGAGTGGGCCTTGACTAAAGATAAGTCGGTGAAGCACATGGACCTGTGTCTGACTGTGGTGGAGCGCATGGCAGGATCTCAGATCAAACTGCAGGGCTGCAGAGAAAACGACAGCAGACAGAAATGGGAACAGATCGAGAACAACACTAAACTGCGACACGTGGGTAGTAATCTGTGCCTGGACAGCCGGAGCGCCCGTAATGGGGGCCTGACGGTGGAGGTGTGCAATCCCTCTCTCACTCAGCAGTGGAAGTTCACCCTCAACCTGCAGCCCTAGTCCCTAGCCCCTACGTCCTGCGTCCTTGGCGGGTCACAGAGCAGTGTGCGGTCTTTGAGAGAACGCTGCCCAGCCGCAGTGGGTCTGCTCGCCCCTTCCCCCTCACCCAGGGCTATGGGGccaaacagacacaaaaacaaacacaaaaactttTTTCCATCCAACTATATACCtcaccattttatttttggtcCAGCTCTTAATTGAAATGCATAGGATTTGaggtattttattttcttcctatTTCTGATGCCAGCCAAATGGATTTAATTTTTGTTGcccttctttttctcattttttcatctttttttttccttaggattttttttaattaatcaaatttgtgtttgtttcatgtAACCAATAATGTTGAATGTAAGTGACGCTCCACAGAGGCTTCTTTCGCgattgggaaaaaaaacgagGACCTTTCCTGTTTAGTTCCACCTTCTTAGCCCagcacaggagtgtgtgtgtgtgtgtgtgagagagagagattctgcAGGCCTCAGTTTGTGTGAACACTGTGTACAGTCTgttcaacaaacaaacaaaaaaataatcagaggCCAGCTTTGTCTTTTCCCCCCTGCAGCTTCTAACAAATTGTCATTCTATCTATTTTGCATCTTGAATGTGCAATGAAGAAAGTTCTGTTTCCTCTTTGAGCCTCGAGAGTGTTTTGGTGGAGAAACAACAGGACACCATGTAGTGCTCTGCGCTACCATTCAGCGTCGGTTGCCTTTGTCACGAAATGGACAATAAGGTGtacttttgtttatttccataATCATCACATTGTCCTGTCATGAGGATTTCTTGATTCAAGTCATAATTTGTAGCTGCATTACGTAGAATCATTCCATTGACGAGATGGTAACTGTAACCGTGTACTGTTTCAGTCACTTtgatatgaaaatgtatttgtgcATTATGTTAGGGTCAGCGTGTGGTCACTGTGATCAACCCGAATCCCAGTGGCAGGACCTGCTCAAGTTTTGATCATGGGCTTCCCAAaacaagagagaggaaatggtTTCAGATGGTTTAATTTGTGTATTGcacattatattttacttgatttcttgttattttattgtttgtccTTCAGTTGTTCAGTGATTTAGGTTAACTGCCTTTGACTGTATCCATGCTACTGTAAACAGAAAGAGTACCTGTGCTGTGCAGCTCTCAGTCAGGGCTGGAAGTAGCTGGACCTCAACTGGACTCTGAGAGAAAAACCTCCATGCCGTAGGtgtgcatttctctctgttaTACATCCTCCATACTTTTATGCTTTCTTTCATCAACTAGATCATGACGTTCATTATGGTACTTCACACAGTGCTGTGGTTCTGGTTAGTCTGTTATAAAGGATGCAAACAGATGAACAGAGAAGCTTTGATTAtagttccattttttttttattatttttttttacattggtgtgtgtgtctgattgaGCATAGCCCTGTAGCGTAATTTATTCTAGATTAGGACACATACTGATGAGTCTCAGATATACTGTATTCACCATTTTCACTTTGTTCCTGAGTATTTTTGACTCCACTACATCACCCTGTATTTGTCCAGCTACAGGGAATCTTTTCCACACGTCCTTGGAAATGAATCTAAGGACACTAAGACAAGTTGAAGCCTTGTTGGCTTTGAGTTCATCAGTGACACTCTGGCACGAGACTGACTGAATCAGGATAAAAACCCGACCTGCGTGTGTTTCATTCCTTGTGTCTGGAGTTGAAAAAGTCAGACATGATGCTCTGCTCTAAATAGAGGGGCTTTTTATAGATGGCAAATGAAAGTACGCACGTGTTGAGTTTCACTGGTGAAATACAACTGCCTATGATCATTTTGCCATTATTATGCCAACATTTGAGCAATTTTGTACATTCTGGAAAGAAACCTTTATatgatgtcaaaaaaaaaacctagggCCAAATTGTGAGAAATCCATTGCTTATGAATCTGAATTggaataaatgtttacataGTACACTGTGCCAAAGTTATTTCCTGTTGGGTTAAGTTGTCTCAGCGTACTTCAAAACTAGAACATTGACAGAAATCATGACCCCATATTTCCCCCAGTTTGATTTTGATTACACAGTAAGGAAAAGGCAAGGGAGATGTGACGGGGTCACCAGTTTTaaaagtgtatatgtgtgtatatacaatcTGTATGTCCATGCATGTACATATAAACGCGTACAATTGCAGTTACTAGTGATTTGGTTAACTGTACAGCGCTTCTATTTGTCCTTTTGTTTTATAGATATGGTGAAAGGTTTACTTTgaatgagaaaataattaacttaaataaaagtttatatataATCAGTTGTGTTAAATGTAAAGTGTCTGTGAATAAAATCACTGGGTGAATGTGTGATTTGAAGTGATCTACC

Function

symbol description
galnt2 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Acts upstream of or within fin regeneration and regulation of bone mineralization. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Orthologous to human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2).

NR:

description
polypeptide N-acetylgalactosaminyltransferase 2

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938070.2 True 4410 mRNA 0.46 16 9001659 9095683
XM_026938078.2 False 4390 mRNA 0.46 16 9001661 9095683

Neighbor

gene id symbol gene type direction distance location
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding upstream 19786 8968989 ~ 8981873 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding upstream 33729 8963903 ~ 8967930 (+)
si:ch73-109d9.2 LOC108262783 coding upstream 39967 8956126 ~ 8961692 (+)
vwa11 LOC108262774 coding upstream 56412 8932174 ~ 8945247 (+)
slc43a3a slc43a3 coding upstream 93092 8898290 ~ 8908567 (+)
cog2 cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949 coding downstream 34296 9129979 ~ 9143030 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding downstream 56647 9152330 ~ 9211293 (+)
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding downstream 221108 9316791 ~ 9338616 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding downstream 286955 9382638 ~ 9408518 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding downstream 325383 9421066 ~ 9487539 (+)
G42833 NA non-coding upstream 47633 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 130733 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 230596 8769324 ~ 8771063 (+)
G42782 NA non-coding upstream 234056 8764611 ~ 8767603 (+)
G42763 NA non-coding upstream 342098 8658225 ~ 8659561 (+)
G43137 NA non-coding downstream 128680 9224363 ~ 9224593 (+)
G43186 NA non-coding downstream 248372 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 393076 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 399294 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 431178 9526861 ~ 9527159 (+)
trnak-cuu NA other upstream 531778 8469624 ~ 8469881 (+)
G42685 NA other upstream 535347 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1330249 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1371519 7620545 ~ 7630140 (+)
G42075 NA other upstream 1780636 7203950 ~ 7221023 (+)
sprn sprn other downstream 1456576 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1498891 10594574 ~ 10608704 (+)
dntt dntt other downstream 2003910 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2587181 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2611252 11706935 ~ 11707005 (+)

Expression


Co-expression Network