LOC113541269


Basic Information

Item Value
gene id LOC113541269
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5470957 ~ 5484612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938153.2
GTCACTTTGCCTTTCCTTTCACCAAATACACCACTGGACCAAAGGACATGGATCCTGGAAAACAAACATATTCCTTCTTGCAAAATTCAGAATAACCACAATTAATTGACTGAAGCAATAACATGGTGCCATCTACACACAGTAAAACTTCTGACAGGAAAATTCAGAAAATTCTGatagctgtttttcttttcttccaaaTCTGCATGGCCTCTCCTCCCAACAGGGAAGAGACAGAGGTGTCTGAGCAGCACAGGAAGCCAGGCTTCTGCTACTTCGGAAGAGTTCAGTCCTGCTGCTATGGCTGGAGAAACGTTAATGGAGAATGCCAGCctgtGTGTATAAAGCCGTGCATAAATGGCATCTGCATTGGTCCAGACAAGTGCTCCTGCACGGAAGGCTACACAGGGGAACAGTGTAATGAGGACATAAACGAGTGTGGCCGACCCAGCAGGCCTTGCTCCCACAGCTGTATGAACACACCTGGCAGTTTCCGCTGTTATTGCGATCCTGGATACACGCTGGATGCTGACGGCAAATCCTGCAACCgtCCAGAGAAGCCTGACTGCACTCGACTTCACTGCCAattgggttgccagattggcaGTAATGGTGCGTTGATCTGCTCATGCCCACCTGGACTCCAACTGGCGCTAGATAAGAGAACATGTAAAGACGTTGATGAGTGTAAAGGTGCCTTCTCTGCCTGCTCAGAACGGCAGACCTGCAGGAACACTTTCGGAAGTTATGCGTGCGTGTGCAGGTCCGGTTACATGTTGGGAATATTAGGGAACTCCGTCACATGCCGAGATGAAGACGAGTGTGTGACAGGTCGCCACCGCTGCAGCCGCCATGCACAGTGTGTGAACACAGACGGCTCGTACACCTGCCAGTGTGAAAATGACTACGCTGGAGACGGCTTCAGCTGCTGGAAACGGAAAAGTGGAAGGTCACAGAACGGCATGTACTTCCAATATAAACTCTCGAAACGAAGCAGGACGACAGATACGGGCTGATGAAAGAAGCCTGGAGAAGGTCTACagctgtgctctctctggcAAGAGAGAAGTGTCAAAAGAGTGCACTGTGTGCTCCTGATGTTTGTTTTCTCATCCGTGTCTTATAACAGTTTAATTCCGTGTGCATGTGTTCATTTGAGCAGCTGTGCTTATTATTAGCATGTCTATTTTAATGGCTGTATTAATGGAATCTCATTATGTTTTGAATTATGGACCAAGAAAAATACAGTCTGCTGACTTTCCACCACTGTTTGAGTGGCAAGCTTTTGCTTATGTAGAAACCCTTTTTCCACCATAGGAGCtttttctgaaactttttttcaGCACCTCATACACTTTAACCTCATTTCCATTGGAGGAAGCCAGACGAATTTCAGTTCCTAGGCCATAGCTTTTATCCTCATTTTTACATCCTATTGCAAAACATGTACTTCCCCCGAGTGTTTAAGTTAGCATAAGAACTGTCTCTGTCAAGCTGGGAATAGTGAACACAATCCAAAGCTTAGCATAGAACCATATACACTTCATTATTAAACTTTTACTGCTGCATGATTATAAAAACCTTTTCACATATTCAACTTCTCTATATGTGCTGCACAGATAATAATAGTTTTACTGTCATCTCTCATTTGAAATGTCATACTCACACAACAAAATTACAATAAACTACAAATCAGCTTCAGCTTCCTCCATGTTGTATGCCaggatgtttattttaatgagcaGTAAACAGCAAAACAGCCAATAAAGGAAAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938153.2 True 1777 mRNA 0.44 7 5470957 5484612

Neighbor

gene id symbol gene type direction distance location
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding downstream 13777 5445363 ~ 5457180 (-)
smad1 smad1,LOC103023608,LOC107734580 coding downstream 37802 5403494 ~ 5433155 (-)
mmaa mmaa,LOC102789515 coding downstream 69308 5391156 ~ 5401649 (-)
zgc:152968 LOC108262836 coding downstream 86141 5357541 ~ 5384816 (-)
pou4f2 pou4f2 coding downstream 389403 5078360 ~ 5081554 (-)
hhip hhip,LOC107654904 coding upstream 13828 5498440 ~ 5532480 (-)
usp38 usp38 coding upstream 340798 5825410 ~ 5840770 (-)
il15 NA coding upstream 745032 6229644 ~ 6243139 (-)
znf330 znf330 coding upstream 768911 6253523 ~ 6267711 (-)
elmod2 elmod2,LOC107594343 coding upstream 899988 6384600 ~ 6392522 (-)
G41114 NA non-coding downstream 189734 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 206168 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 659532 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 696304 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 701737 4765079 ~ 4769220 (-)
G41174 NA non-coding upstream 115372 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 391489 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 810620 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 887043 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 1051092 6535704 ~ 6538550 (-)
lsm6 lsm6 other downstream 242990 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 564718 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 861507 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2436404 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 2437020 3033866 ~ 3033937 (-)
gab1 gab1 other upstream 271405 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 1676862 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1954292 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2650029 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 2985374 8469986 ~ 8470057 (-)

Expression


Co-expression Network