LOC113541438 (mcub,LOC108262756)


Basic Information

Item Value
gene id LOC113541438
gene name mcub,LOC108262756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7291721 ~ 7315462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938402.2
tcacttctctctctctctttctctctctcactctctctctcacacacacacactctcctctccgttcacttctcctccctctctcactcctctgtcctgttCTCCGGTAGGAGGAGCGCCGGGGGAGCGGAAAGAAAAGAAACGAGTTTAAAACCGAGTGAGGGGAAAAGCACTAATGAACAGGACAGTGGGAACCCCATGGACACACTGACTGCACTCTGCCTTCCACCAGCCACTCCTTAACGGATCTACATGAAGGCGATATCCTGAAGTTTTGGCTTGTTTTCTCAGCCATGGCTGCTTTCAGAACAGTCTTCAGACTGTGTGGGTTTTACCGCAGTCATCCACAGAGCTGTTCTGCGTTTAAAACAAGCGCTAATCCGCTGCAAACGctCAGCCAGTGGAGTCTTCCAGTCGCCTGCTGTAGCACTGTAGCACCATCTAGTGATCTTTCAGTGCAGTACAAACATGGTCGCCCAGTACTGGCTCTGCCTCTGCCTTCCAGACAGGAGAAATGTCTATTCTACCTGAAACCCATGCTCTCAACCGTCAATGACTTTATTCATGACATCCAGAGAGAGGATCCAGGAGTCTTAACAGCTTCTGTACTCaccacagATGGTGTGAGGATTGCCTCCGCTACATCTATGGACACTCTACTCAACAAGGGCTTCCAGCTGTGTATCAATGGAGTCGTCTACAATGTCCAAGCAGCATCAACAGaaacagTGCCAAGTGAGGCTGTGAAGAGTGTGTCAGACATAAAGGACATGGTGCACATGTTACACACAGCGCTGAACCTGCCTGAGCATCACCTAGTGAAGGAAAGGCAGCTACGGGAGAAACTGGACATTCTGAAACAAGAACTCCTTCCTCTGGAGCAGatgAAGGTTCATCTTGACGTGAGAGCTGAGCACAAGGCTTcacgtgctctctgggtgggctTGGCTCTGCTGTCGGTGCAGGGTGGAGCTCTGGGCTGGCTCACGTGGTGGGTTTACTCCTGGGACATCATGGAGCCTGTCACCTATTTCATCACCTACTCCACCAGCATGGGGGTCTACGCCTACTACGTTCTCACCAAGCAGGACTACGTTTACCCAGATGCAAAAGACAGGCAGTTCCTGCATTACTTCTACAAAGGCGTCAGAAAACAGAAGTTCAACGTGGAGAAATATAACACGCTCAAAGACGAGCTGGCTTCGGTAGAGGACGACTTGAGACGTTTGAGGAACCCAAATCAACTCCAACTGCCTGTGGAACAAATCAAGCCCAACAGTCATGCTGCAGTTCCCTAAACATTATACCCTTataatgatgttatttataataCTGTTTACAGATATTATTTCATGGCCTACTTTTAGAAAACATCATATTTGGAATATTATATGCATTATTTGGAACAACCAGCTATTGAAATAAAGCACTTATACTGGA

Function

symbol description
mcub Predicted to enable calcium channel inhibitor activity. Predicted to be involved in calcium import into the mitochondrion and mitochondrial calcium ion homeostasis. Located in mitochondrion and nucleoplasm. Is integral component of mitochondrial inner membrane. Part of uniplex complex.

NR:

description
PREDICTED: calcium uniporter regulatory subunit MCUb, mitochondrial

GO: NA

KEGG:

id description
K22829 MCUB; calcium uniporter regulatory subunit MCUb, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938402.2 True 1440 mRNA 0.48 8 7291721 7315462

Neighbor

gene id symbol gene type direction distance location
hadh hadh,LOC107594428 coding upstream 136221 7150285 ~ 7155500 (+)
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding upstream 142596 7142438 ~ 7149125 (+)
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding upstream 150811 7126787 ~ 7140910 (+)
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 374066 6844872 ~ 6917655 (+)
dkk2 dkk2 coding upstream 496213 6779406 ~ 6795508 (+)
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding downstream 27824 7343286 ~ 7346567 (+)
LOC113541239 NA coding downstream 38606 7354068 ~ 7356693 (+)
LOC117596353 LOC108263508 coding downstream 41272 7356734 ~ 7358561 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding downstream 68610 7384072 ~ 7393247 (+)
LOC113543274 LOC108263610 coding downstream 80963 7396425 ~ 7408116 (+)
G41951 NA non-coding upstream 274796 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 322882 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 588915 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 689558 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 692754 6598703 ~ 6598967 (+)
G42093 NA non-coding downstream 32697 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 45738 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 106629 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 157908 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 325473 7640935 ~ 7644922 (+)
G42075 NA other upstream 70698 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1063036 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1933861 5263582 ~ 5357860 (+)
G41047 NA other upstream 1949971 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2520117 4664316 ~ 4771604 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 305083 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 333736 7649198 ~ 7671410 (+)
G42685 NA other downstream 1150285 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1154162 8469624 ~ 8469881 (+)
sprn sprn other downstream 3236797 10552259 ~ 10558295 (+)

Expression


Co-expression Network