abcb10 (abcb10)


Basic Information

Item Value
gene id abcb10
gene name abcb10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12702450 ~ 12712789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938485.2
CTTTATGGTAGCTCACTGCAGCAGCACCCTCctgtactaaacagtatgtGAGCAAAGTACGCCTCCTTCTATCTGCACCTCTTGTAGAGCAGTGCTAGTGCGGTAGTTGTGTAGTCGGTGCGGTCACAACCTGTGTGTTGGGAAACTTGTCTCCACTGGTCTACTGTAATTAACAGCTTCTTTTAGGACATTTACAGggTAAACCCAGGCTTTGCCAGGCAACATGGACGCTACAGGGAAGGACACATAGGACACATTAGTGTGTGACAGATTTTGGTGACATTTGGGAGTGCCAGAAACCTGTGAGGGTGTGAGAGGAGATAACGAGGGACAAGGCTGTGTGTAGCTGTCAGACCCAGATAATGTTCAGTAACCGTCAGAAACTGAACAGTAGCCTGGCTCACAATAGGCTTTCCTTCTCTGAAGATGCCAGAAACTGAAACTATCAAGAATATGTGTTTAGTTATTAGTTTAGCTAATTACTCACTAACTAAGAGCCAGACGGAGTGTAACAAGGTTTCTGCGCTTTTGTGGATGGACTTGTGATTATGACCGTCATTGAAAGTGAAGTGGACCAAAGCTAAAGCCTCAGTTCAGCTTACTTCCTCTAAATGTGTGGAGTAATGATGTTGCAAATGTCAAGATTCACTACCAGGAAGCTGCTACAGCAGTGGACTATCACCTGCAAACGCCAAGTAAGACTTTACCAGCTGTCTGGTGTGACTTTAATGAGATCCCGGAGAAAACTGGTCTGTAAAACTGTACTTGAAGCATCCCTTTTTTCTCACGTCCGACCTGGAGCAAGTTTAGGTCCACATTGTGTTTGGACACACATCAGGGCCTCCACTCCATTTGCTTTTTACTGCACGTCAACAGACTCCAAGCAAGCAGCAGAGCATGCAGGTAGTGAGGTCAAAACCAAAGACAGACCTGGACGGATATCCTCAGATGACTTCAAAAAGTTATTGCAGCTTGCTCATCCAGAGCGCTGGAGGCTATCAGCTGCCGTGAGCTTCCTTGTTGTCTCCAGTGCCGTCACCATGTCTGCTCCATTTTTCCTGGGTAAAGTGATCGACACCGTCTACTCAAACTCATCTGCAGACTTTAGTGCCTCCCTGACCTCCCTGTGCATCATGCTGGCAGGGGTTTTCCTGTGTGGTGGTGCTGCCAACGCTGCACGTGTATATCTTATTCATGTCTCAGGGCAGCAGATTGTGAGAAACTTACGTGAATCCCTTTTTTCCTCAATTTTGAGGCAGGAGGTGGGATTCTTCGATAAGACCCGCACTGGTGAGCTCATTAACCGCCTTTCCTCAGACACGGTTCTAGTTGGACATGCTCTCACTGACAACATGTCTGATGGTCTACGGTCAGTTGCTCAGGCTGGAGCTGGAGTCAGCATGATGTTCTATGTGTCACCCAGTCTTGCCACCTTTGTCCTAATGATTGTACCTCCTGTGGCGGGCCTGGCAGTCATCTATGGAAGATACGTGCGCTCCATATCTAAACAAACACAGGATGCTCTggcacaggccacacagCTGGCAGAAGAGAGGATCGGTAACCTACGAACAGTTAGGGCATTTGGCAAAGAGCTGACAGAAGTGCAGACCTACGCAGAGAAGGTGGAGTATGTCCTCCGACTGGCTAAGAAGGAAGCTATGCTTACTGCTGGGTTCTTTGGAGTGacgGGCCTGAGTGGCAACATGATTGTCCTGAGTGTGCTGTATAAAGGTGGGCTGCTGATGGGTAGTGAGCACATGACAGTAGGAGAGCTTTCCTCCTTCCTTATGTATGCCTTCTGGGTGGGCATCAGCATTGCTGGCCTGAGCTCGTTCTATTCAGAGCTGATGAAGGGGTTTGGGGCTGGGACACGCCTGTGGGAACTGATGGAGCGGAAGCCTGAATTTCCTCTCAATGAGGGACTTGTGTTGAGACCAGAGCAGCTGAAGGGAGCCCTAGAGTTCTGTAACGTGTCGTTTGCTTACCCGACAAGGAAGGATGTCCCCATCTTCCAGAACCTGAGTCTGTCTGTGCCAGCTGGTTCAGTGATGGCAGTGGTGGGGTCAAGTGGCTCTGGAAAATCTACTCTTGTGTCCCTTTTGCTCCGTCTGTATGACCCAGACTCAGGTATGGTAACTATTGATGGCCATGACATCCGGACGCTGAATGCTTATTGGCTGCGGAGTCATATTGGAACTGTAAGCCAGgaGCCAGTCCTCTTCTCCTGCTCCATTGCTGAGAACATTGCGTATGGAGCAACAGATCCCAGTCAGGTCACAACACAGGACATCCTACGAGCAGCACAGATTGCTAATGCTCATGATTTCATTAATGGCTTTCCCAAAGGCTTTGACACTGTTGTTGGAGAGAAAGGAGTACTACTGTCAGGTGGACAGAAACAAAGAATTGCTATAGCAAGGGCCTTGCTAAAGaACCCCAAAATACTGTTACTAGATGAAGCCACAAGTGCTCTGGATGCAGAGAATGAGTTCTTGGTACAAGAGGCCCTGGACCGGCTAATGCAGGACCGCACGGTGCTTGTCATCGCTCACCGTCTCTCCACTATCCAGAATGCAGATGCTGTGGCTGTGCTGGATCAGCGGCATGTGGTGGAGTGTGGCCGTCATGCCCAGCTTCTCACCAACCAAGACGGTCTCTTCCGCAAGCTCATGGAGAAACAGGCCTTTTTAAATGCTGAGCAGAAGCTGGCTCTTGCCAAATAGAAGAAGACATTCTGACATCTGAAGAAAGTAccaatgaaaatgaatgtgtatgtaaacTGACATGCAGTGTCAGAAGAAAAGAGCTGTAGTTGTATCTGAGTGCCTACATGCAGTATAAACTACCAgtcaaatgtttgtttataggaagatttttctttattttagaatattaaTGAAGACATCTACTTACTCTATGAACTAACAGTGGAATTATGTAGTGATCAAGAAAAGTGTTTAACAAATCcaaacagttttatatatacaatttttaaCAGTATTCCTGAGGAAGCTGTGCACTCCAGGTGTCTTCTCAACCAGTTTCATGACACAGTTTCATCCAGGAGGTGTTTCTTAAAGTTCCCAAACAGGCCAGGCTTCTCCTGCATTCTAAATAGGAATTACTTGTTTGGGGAAACAGTttagttttaattaaacatactTGTTGTAGGAGAAaacttatttaaaatacattttgattcagatttttaaatatttaccttGTGTGAGACAAATTTCAACCATAACTctttctcaaaatataatttctttcCCTCCCatttcctcccacttcctcCCACTAggttttaaatgtctttaagacAATGAAAAATGTGTATTCAATCTAgtgtgtacaaacttttgactggtagtgtgtgtttactcaAAAACTGATGTCAACACTCAACTCCATTATAAGGTACAAAAGTGTAACAAACACAGAGGACTATTAATTTAAGACACTGCCACTTTACATGCAGTATAACTGGAAACTGTGCTTTTTTTAGTCATCGAATATTTTATACCCTTTCATATAGTATAAATATTCCTAGTAATACAATTTTCAGGATCATAATCATTCTAATCATACAGTAGTATGTGATTCACTGCTCTCTTTGTTGGTAAAAGACAGGTATGCTTTCAATTTATAAAAAGATTTTGGGATCTGGGAGAAGCTCATTATTATTGTGGTTTCAgttttattgtatataatgaaatatttgacCATGTTTGCCTAAACTGTGGTATTTCAGCTCATAAACAATTCAGCTGGTCAATCCTGTATCAGAGACTTGCACATTGTTTAAGTATGTGGAAATGTCAGCTGCTGTATAGGAGAAGGATCCACCCAGAACTGTTGTTTTGCAGTCAACCTTCAAACTACTGGCCTTCAGCACAGGGAACAGTCCATATTTGCAAACACAATGGAGAATAGTATGAATGAccaccaaaaagaaaaaacttgagAGATGATTATCTGTGCGAACATACACTATTAGAGTCTGCAATCAAAATAGGTGTTTTGTAAGTGTGATAAATAGAATATTTCTTTTAATCTGTGGGTGTATTATAATGTTAGGTGTGCTAACTTATGAAAattctttatataaataaactactGATTGAATTAA

Function

symbol description
abcb10 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Acts upstream of or within erythrocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ABCB10 (ATP binding cassette subfamily B member 10).

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial-like

GO: NA

KEGG:

id description
K05657 ABCB10; ATP-binding cassette, subfamily B (MDR/TAP), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938485.2 True 4135 mRNA 0.44 14 12702450 12712789

Neighbor

gene id symbol gene type direction distance location
trnat-ugu NA coding upstream 34564 12667814 ~ 12667886 (+)
LOC117596891 NA coding upstream 87243 12613042 ~ 12615207 (+)
LOC113545096 NA coding upstream 92611 12607529 ~ 12609839 (+)
LOC113545271 NA coding upstream 98701 12601078 ~ 12603749 (+)
frmd6 frmd6 coding upstream 108306 12573987 ~ 12594144 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 1842 12714631 ~ 12717322 (+)
ccsapb LOC108263641 coding downstream 6116 12718905 ~ 12723241 (+)
pdcd2 pdcd2 coding downstream 46908 12759697 ~ 12762641 (+)
zgc:153169 LOC108263419,LOC108426824,LOC107725444,LOC107666437 coding downstream 56214 12769003 ~ 12774087 (+)
rab1ab rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC108263420,LOC107725478 coding downstream 61633 12774422 ~ 12782694 (+)
G45170 NA non-coding upstream 27827 12674408 ~ 12674623 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding upstream 54044 12647895 ~ 12648406 (+)
LOC113542444 NA non-coding upstream 203431 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 386580 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 544222 12156248 ~ 12158228 (+)
LOC117596851 NA non-coding downstream 20643 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 98130 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 108067 12820856 ~ 12821389 (+)
G45376 NA non-coding downstream 157214 12870003 ~ 12870223 (+)
G45453 NA non-coding downstream 247301 12960090 ~ 13031136 (+)
LOC117596823 NA other upstream 59146 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 66044 12636320 ~ 12636406 (+)
LOC113544122 NA other upstream 936036 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 957226 11682864 ~ 11745224 (+)
spef1 spef1 other downstream 216770 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 269617 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 319261 13032050 ~ 13034350 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 785259 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 1500580 14213369 ~ 14286542 (+)

Expression


Co-expression Network