timm23b (timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858)


Basic Information

Item Value
gene id timm23b
gene name timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22571371 ~ 22587644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938663.2
AGGGATCTGGCCAGAAAATAGACTTTCTGTCGTAAAGACTGTCGTGAACGTCGCATGGAACTCCTCTCAAAGCAATTATAATGCACGCCTTGATACATGCGTGTAAATCTGCGTTTAATTAATATGCACAGATAATTTAATTCACCTGCTTGTATTGCAAGCAATATTATTTCTGGTTTTATAACATTATTCTGGGACGATAGAAGGTTGCTTTACGGCAAACGAGGGGATTGGCAGCTGTGACAGCTGTCTTGAAGGCTGAAATTGGTCTGAGTACAGGAGAGCAAACACGGGGAGATGGATAAGGAGCCTGCAGGATCGTCTAACCCGGGCTCAGGCGGAGcagaaagaggaggaagaggctTTGGCAGTTTATTCAGATCTACAGGTCCGGTTTATTCAAATTCAGAGCTCGCCGGTGTGCCTTTGTCTGGTATGAGCTCTCTCTCACCTTATCTCAATGTTGACCccaaatatcttattcagGATGCAGATGAGTTCATTTTGCCCACTGGTGCCAACAAGACAAGAGGACGCTTTGAGTTGGCTTTCTTCACCATTGGCTCATGCTGTATAACAGGTGCACTGTTTGGAGCCATCAATGGATTACGAATGGGACTGTCTGAAACTAGGAATATGGCCTGGTCTAAACCTCGTAATGTGCAAATATTAAATCTGGTGACCCGTCAGGGAGCTACATGGGCGAACACTCTGGGCTCAGTGGCTCTATTATACAGTGTATTTGGTGTGATCGTCGAAAAAACCAGAGGAGCAGAGGATGATCTCAACACCCTGGCTGCTGGCATAATGACTGGTGTCCTCTACAAATCCCCAGGGGGTCTGCGTGGAGCAGTTCGAGGAGGTGTGATCGGCTTTGCATTATCGGGACTGTATGCCTTGTACAATAACTGGGACCATCTGAAAGGCAGCTCCCCCACTCGctactgagaaaagagggacaaGAGTGGACATTTTTCACAGTTAGATGTCATGGCCTGGTTTATTGTTCAATCCTACAAAACCACTGTTTCATTCTGATTCTCTGCCTCTGAGATTTTATCGAAGATTAAAATGTTCACTTAATGCtaattttcacataattttcaCTTAATGCACATGCTGCATTTCCATTAACTCTAAACAGctgatttgtgtgtgatttctgtTCTTGATGGATTTATGTCTTTTTCCATGGGGTACATAAAATTGAGTGCAAAACTTTCTTTGAAAATGAAGAAACCAACAATGCAAGTCgagaataagaaaataaatcattatatgaATATGTAATGTAGATTTGTATATAAACTGAAGCTTGGTGgcactgtacatttttaatatttcacccAGAAACCACAACTGTGTTGTGTTCTATGGTTCactattttacaaaatgaatgGGTGTTTTTGTTCCTAACTTAGTGAACTGTTGTACTTTGTCTTTAAGACTTGTTATAATTACATGTAATAATAACTGACTTCTTTTTAATTTCTCTGAATTGCTAATATgctaataaatacaaaagagcctgttttatataatgtatgGAGTCTAATATCAGTAATAATTATCCCACATTCTCaaaaaatatagtcaaatgGATGCTAATTTTTTGATCAAATATTCCACCCCATTAAAAATACAGGCTTGTGATAAATCAAGGAGAAAATGACTAACATTTCTACTACTGTTAATTGGCTTTGACAGTCAGATGCACTTGATTTTATAGACATGACTGCAGTGTACAGACAATTTATGTGACCTTCTGCCAAGTTTTCAATCTTCTAATGGCTTTCTGTATCAGCACAACAGGTAATGAGGAAATTGCCTTGATATGATAAACTAAGCACAGTGCGTTGTAAGCATAAAATTACAAATGACACTAAATGATACAATTACAATGACACTAAGGCATGTTCACCCAGATAAAGTATTTGTAATAATTACAGAGAATAAAGTATGTTATATTTAATTGGACATTGACACTGTGTTTGCATGACTTAAGTCCAAGTGTATTTACATCTACGGTGTAAGCCATGATTCAGACCTTTCTGAGGCTATTACAGGGACCAATGATTGATCACTAGACAGCTGTCTGTATTTTGTCATGTGTCATGTGAAGTCATGTTGACACAAGTCATGTCATTAAAAACCTAAGTTAATTCCA
>XM_034302782.1
AGGGATCTGGCCAGAAAATAGACTTTCTGTCGTAAAGACTGTCGTGAACGTCGCATGGAACTCCTCTCAAAGCAATTATAATGCACGCCTTGATACATGCGTGTAAATCTGCGTTTAATTAATATGCACAGATAATTTAATTCACCTGCTTGTATTGCAAGCAATATTATTTCTGGTTTTATAACATTATTCTGGGACGATAGAAGGTTGCTTTACGGCAAACGAGGGGATTGGCAGCTGTGACAGCTGTCTTGAAGGCTGAAATTGGTAATTCTGTACATTGATCATTTgaaacttgtttgtttgttattgtcCACATTTTTAAGCTTCCGGATTGTCTCAGTGACGCTGTACAGGGAAGGAAGGTCTGAGTACAGGAGAGCAAACACGGGGAGATGGATAAGGAGCCTGCAGGATCGTCTAACCCGGGCTCAGGCGGAGcagaaagaggaggaagaggctTTGGCAGTTTATTCAGATCTACAGGTCCGGTTTATTCAAATTCAGAGCTCGCCGGTGTGCCTTTGTCTGGTATGAGCTCTCTCTCACCTTATCTCAATGTTGACCccaaatatcttattcagGATGCAGATGAGTTCATTTTGCCCACTGGTGCCAACAAGACAAGAGGACGCTTTGAGTTGGCTTTCTTCACCATTGGCTCATGCTGTATAACAGGTGCACTGTTTGGAGCCATCAATGGATTACGAATGGGACTGTCTGAAACTAGGAATATGGCCTGGTCTAAACCTCGTAATGTGCAAATATTAAATCTGGTGACCCGTCAGGGAGCTACATGGGCGAACACTCTGGGCTCAGTGGCTCTATTATACAGTGTATTTGGTGTGATCGTCGAAAAAACCAGAGGAGCAGAGGATGATCTCAACACCCTGGCTGCTGGCATAATGACTGGTGTCCTCTACAAATCCCCAGGGGGTCTGCGTGGAGCAGTTCGAGGAGGTGTGATCGGCTTTGCATTATCGGGACTGTATGCCTTGTACAATAACTGGGACCATCTGAAAGGCAGCTCCCCCACTCGctactgagaaaagagggacaaGAGTGGACATTTTTCACAGTTAGATGTCATGGCCTGGTTTATTGTTCAATCCTACAAAACCACTGTTTCATTCTGATTCTCTGCCTCTGAGATTTTATCGAAGATTAAAATGTTCACTTAATGCtaattttcacataattttcaCTTAATGCACATGCTGCATTTCCATTAACTCTAAACAGctgatttgtgtgtgatttctgtTCTTGATGGATTTATGTCTTTTTCCATGGGGTACATAAAATTGAGTGCAAAACTTTCTTTGAAAATGAAGAAACCAACAATGCAAGTCgagaataagaaaataaatcattatatgaATATGTAATGTAGATTTGTATATAAACTGAAGCTTGGTGgcactgtacatttttaatatttcacccAGAAACCACAACTGTGTTGTGTTCTATGGTTCactattttacaaaatgaatgGGTGTTTTTGTTCCTAACTTAGTGAACTGTTGTACTTTGTCTTTAAGACTTGTTATAATTACATGTAATAATAACTGACTTCTTTTTAATTTCTCTGAATTGCTAATATgctaataaatacaaaagagcctgttttatataatgtatgGAGTCTAATATCAGTAATAATTATCCCACATTCTCaaaaaatatagtcaaatgGATGCTAATTTTTTGATCAAATATTCCACCCCATTAAAAATACAGGCTTGTGATAAATCAAGGAGAAAATGACTAACATTTCTACTACTGTTAATTGGCTTTGACAGTCAGATGCACTTGATTTTATAGACATGACTGCAGTGTACAGACAATTTATGTGACCTTCTGCCAAGTTTTCAATCTTCTAATGGCTTTCTGTATCAGCACAACAGGTAATGAGGAAATTGCCTTGATATGATAAACTAAGCACAGTGCGTTGTAAGCATAAAATTACAAATGACACTAAATGATACAATTACAATGACACTAAGGCATGTTCACCCAGATAAAGTATTTGTAATAATTACAGAGAATAAAGTATGTTATATTTAATTGGACATTGACACTGTGTTTGCATGACTTAAGTCCAAGTGTATTTACATCTACGGTGTAAGCCATGATTCAGACCTTTCTGAGGCTATTACAGGGACCAATGATTGATCACTAGACAGCTGTCTGTATTTTGTCATGTGTCATGTGAAGTCATGTTGACACAAGTCATGTCATTAAAAACCTAAGTTAATTCCA

Function

symbol description
timm23a Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Predicted to be integral component of mitochondrial inner membrane. Orthologous to several human genes including TIMM23 (translocase of inner mitochondrial membrane 23).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim23-like isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0071806 protein transmembrane transport biological_process
GO:0007275 multicellular organism development biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG:

id description
K17794 TIM23; mitochondrial import inner membrane translocase subunit TIM23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938663.2 False 2168 mRNA 0.39 8 22571371 22587644
XM_034302782.1 True 2266 mRNA 0.39 8 22571371 22587644

Neighbor

gene id symbol gene type direction distance location
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding upstream 305952 22244109 ~ 22265419 (+)
LOC113537563 LOC108263692,LOC108422693 coding upstream 600411 21967741 ~ 21970960 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 610972 21954905 ~ 21960399 (+)
hcar1-3 NA coding upstream 653703 21914549 ~ 21917668 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 666262 21899556 ~ 21905109 (+)
yipf3 yipf3,LOC107696384 coding downstream 13912 22601556 ~ 22608030 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 20835 22608479 ~ 22621693 (+)
dlk2 dlk2 coding downstream 108751 22696395 ~ 22720888 (+)
mea1 mea1 coding downstream 155083 22742727 ~ 22745804 (+)
LOC113540824 syndig1,LOC107717853 coding downstream 283246 22870890 ~ 22890869 (+)
G51161 NA non-coding upstream 34934 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 121862 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 234327 22266697 ~ 22337044 (+)
G50938 NA non-coding upstream 283269 22285438 ~ 22288102 (+)
G50936 NA non-coding upstream 319323 22251835 ~ 22252048 (+)
LOC117596907 NA non-coding downstream 141678 22729322 ~ 22736667 (+)
G51358 NA non-coding downstream 370756 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 482677 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 485312 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 487086 23074730 ~ 23076471 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 18619 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 547560 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1452407 21025733 ~ 21118964 (+)
G49862 NA other upstream 1995892 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 2178770 20382346 ~ 20392601 (+)
G51271 znf318 other downstream 196684 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 323500 22911144 ~ 22913552 (+)
G51562 NA other downstream 866784 23454428 ~ 23455549 (+)
G51749 NA other downstream 1109388 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 1206036 23793680 ~ 23834851 (+)

Expression


Co-expression Network