pkd2l1 (LOC108263119)


Basic Information

Item Value
gene id pkd2l1
gene name LOC108263119
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13359076 ~ 13366067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938675.2
ATGTCTATGAAAACCACTGACTTACACAGAGCACCTCAGTAACCAGCATGCAGCACGTAAACGGCAGGGCAGAGAGTCACCTGAGCAGTCAGGTAGAGTGTGAACTAGAGAGTGTAGGGAAACGAGCGTGGGTGAACCAGGCATACTGTGGCACCCCTCCACTGGTAAGGCACTCCGTCAACACTGTCTACAACGTTCCTTCCCATTTTGGTACACCTAACCCCTACCAGGCCGAGGCCACGGTGCTAAATCAACAGGAGAAGAAGAAATCTGGATGCTGCTCTGCTTTCCTTAAAGGACTATGGGGAACGACACTGACAAAggacacaacaaaaaatcaAGAGCTCTTTCTCAAAACAACTCTCAGAGAGTTATTTATCTACATTCTTTTCCTAGTGGACATATGTTTATTGACCTATGGCATGACCAGCTCAACCACCTTCTACTACACTAAAGTTATGAGTGATTTGTTTGTGAATTCATTTGAGTCTATTGGCAGCATGGATGATTTTTGGACATATGCAGAAGGTCCATTGATGGATGGCCTTTACTGGACCACATGGTACAATGACCAGCCTCTTGACACTGGGTCACACTCCTTCATTTACTACGAGAACATGCTCCTGGGAGTCCCTCGTATGCGACAGATAAAAGTCAAAAACAATTCATGCAAGGTGCCAGCAGACTTTCGCACTGAAATCACTGACTGCTTTGATGTGTACaatgagaagaaagaagatGAGAGTGCGTTTGGACTTGTCAATGGATCAGCCTGGAAGTACCACACAGAAATTGAGATGAAAGGGTCAAATCACTGGGGTTTGCTGGCCACATACACTGGAGCAGGGTACTATCAGGACCTTGCCTTGACCAAAAACGAAAGTGTTATTATCCTGGCAGAACTCAAAGAAAACCTGTGGCTGGACCATGGAACCAGGGCTGTTTTCATTGATTTTTCCACATACAATGCCAATATCAATCTCTTCTGTGTTATAAGGTTGGTGGTTGAGTTCCCCGCCACTGGTGGAGCAATACCTTCATACCAGATCCGGACAGTTAAGCTGATTCGGTACGTTACCTCATGGGATTACTTCATCATCGGCTGTGAGATGGTCTTCTGTGTGTTCATCCTTTACTACATTGTGGAGGAGATACTGGAGGTCCGCATACACAAGTGCTCGTATTTCACCAGCATCTGGAACATTCTGGATGTGATAGTGTTACTGCTTGCTGTTGTTGCAATCATCTTCAATGTATTCCGGACTATCAAAGTAAACAAACTACTTGGAAGCTTACTACAAGACCCTAGCATCTATGCAGATTTTGAATTTCTGGCATTTTGGCAAACTCAGTACAACAACATGAATGCTGTAAACTTGTTTTTTGCTTGGATCAAGATATTCAAATACATCAGTTTCAATAAGACGATGTCACAGCTGTCCTCCACGCTGGCACGCTGTGCCACAGACATCCTGGGGTTTGCCGTCATGTTCTTCATTGTGTTTTTTGCCTATGCCCAGCTGGGCTATCTTCTGTTTGGTACTCAGGTTGAATCATTCAGCACATTCCAAAAATGCATTTTCACCCAGTTTCGGATCATCCTTGGAGACTTTGACTACGACGGCATAGACAGAGCAAACAGAATCCTGGGGCCGATATATTTTTTCACTTATGTGTTCTTTGTCTTCTTTGTGTTACTGAACATGTTTCTGGCCATCATCAATGACACGTACTCTGAGGTCAAGGAGGAGCTCGCCTCCCACGACGATGACCTCCATattacagacattttcaaaCAGACTGTGATGAAGCTGAAATTCAAAAAGGACAGGATCTCAGATGTTCAGAAGGCCTTAGATGGGTCAAAAGACTTGGAGTTTAGGGACTTCAGAGAAACACTAAAAGAAATGGGtcatgatgataatgatatCTCTGAAGCTTTCTCCAAATATGATAAGGATGGCAATCAGATTCTAGACCGTGAAGAGcaggagaaaatgaaaagagagcTGGAGGAAAAAAGGAATGCACTCAATGCAGAGCTTCGTAACCTTACGCATGGAAATAAAGCAGAAGACAACGAGGAGACAAACTCAAGCTCAGTGAATCAGCAAGAGTTTCAGATGTTGGTTAAACAAGTGGCTGAATTGGAAGGTGCTCTAGCCATCGCAATATCCAAGATTGACATGGTCATGGAAAAACTGGGATTGCAGGACACtgcaaaagcaaacaaaaaacaaagcaatgGAAAAACACCTGTCAACCAGAAATGAGCAAGAGGGGCGAACATCTGGAAGGCAATGTTATGGAAAACCCAGCGCGAGTTCCCATCTTGGTCATTGGCTGCTCAGTTGAGAAATGAAGGAATTAATTATCGGATATAGCCTGGCCCACGGTCACAGAGAACATTAACTCTACATGTCACTGAAGCAAACATGACCAAAATGCCTACAACCTTATTGGCTAGTAAACTATAAGAGACTAGGAAAACTACACCTATTATAGAAAATCTTACTCTCGCATCCAGAAATATAGGCTAGATGACCATGGTAAATATTATTCTAGAAATAAACTTGACATCTTAGCAACTGATGCATGTATTAGTACCTTTACGCAAACATTTCATCACAGGAGCAGGAAGACATCAACCTGGAGAAATCACACTCTGTTACTCACTTCAGTGTGGATGTCACagattgtgtgttttatgtccTGTATCTTTGCTGTATTGTGAAACTAGAGTGCTTGTCATTCACTTAGATAATTCTAACTAATTACTAACCTCACCACTTTGTGACAGACATGAAAGTGAGTTTAATAAATTCTGTATGGCAGCTCAAGGGTCTGTACTAGGGGTCGTGAAAGAGTTTAAATTCTAAGAGAACAAGACAGCCACTGCTGTGCCCTTGAGCAAAAGCCACAAATTTTCAGATGTCTGTCTTGACTGTAAATTTGGATAAAGGAATTTTCCCAATGAATTAAGACAAAGACCCCAATTTATATGAGATTAAAGAATTTAGGTATAGAGACAACATTAAGTCATAGATTCTGTACTCTGGCTTCACCTTTTGGCTAGAAAGTGAAAAcagatttaattaatatttaataatcatattcttgtgtgtgaagtgtgtaactTTGCTAATGCTGATGGTTAACTGGAAAAATAAGCCTATTAAAAAAGCTTTTACTGTATTACATGTAATTAACTGTAGGCATATTTGAACTTATTTATAATGTGCTGATCTTGAATTGTGAATGTAAAATTGCTTGAACCTCAAACACTTCATGCTTGATATTACATGTTAGCTGCAAACTCTCAGCAATTGAggttttttaatattaataattttctaacAGTAAAGTTATACTTGCCTCTAAAAG

Function

NR:

description
polycystic kidney disease 2-like 1 protein

GO: NA

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938675.2 True 3384 mRNA 0.41 15 13359076 13366067

Neighbor

gene id symbol gene type direction distance location
atoh7 atoh7 coding upstream 2644 13353569 ~ 13356432 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding upstream 12970 13339258 ~ 13346106 (+)
LOC113543782 LOC108263125 coding upstream 20742 13333341 ~ 13338334 (+)
calhm1 LOC108263121,LOC108263394 coding upstream 25915 13329914 ~ 13333161 (+)
calhm3 calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682 coding upstream 29583 13325893 ~ 13329493 (+)
bag3 bag3 coding downstream 10657 13376724 ~ 13383343 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 19419 13385486 ~ 13404675 (+)
sec23ip sec23ip,LOC107655440 coding downstream 53881 13419948 ~ 13430260 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 222249 13588316 ~ 13633478 (+)
fancl fancl,LOC107585345 coding downstream 669571 14035638 ~ 14056463 (+)
G45594 NA non-coding upstream 45855 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 46996 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 263195 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 306547 13052240 ~ 13052529 (+)
G45459 NA non-coding upstream 341476 13011946 ~ 13017600 (+)
G45640 NA non-coding downstream 9732 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 155772 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 156839 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 278053 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 523212 13889279 ~ 13889849 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 324726 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 353753 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 421774 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 715772 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 722670 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 131981 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 847302 14213369 ~ 14286542 (+)
cgas NA other downstream 995300 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1606501 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2427339 15793406 ~ 15797204 (+)

Expression


Co-expression Network