aimp1a (aimp1)


Basic Information

Item Value
gene id aimp1a
gene name aimp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6824909 ~ 6844491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938824.2
tacagtatacaatatgATATATTGCGTTATCAAGACGTGACTTCTGCGTCATCATCCTGCGACGCGTTGACCGGAGAAACGCGAGGGAAGCCTGACCACGTTAGCTATTTCGATTGCCCTTGAATGTTCTTGGCACGCTCCTTATTCAGGATGTCAGGCCACACACCCTCGCTGATGAGACTGGAGCAGAGGGCAGCCGAGGCGGATCAGATCATCGAGTACCTCAAACAGCAGGTCCAGCTACTGAAAGAAAAAGCCATGGTGCAGGCCACcatgagagaggagaagaagctGATGGTGGAGAACGCCAAGCTGAAGAAGGAGATTGAAGAACTGAAGAGGCAACTCCTcgagaaggaaagaaggagaggAGTGCCAGTGCCTATGCCCTCAGGAGACTCGAGTGTCCAGTGTGTGTCTAAGCCTTCAGCACCAGAGCCGACAGCTAAACCAGCTCCTGCAGCTCCGGCCTCCACTGTTCAAAGCCCTCCAGCCAACAGCACCGAGGCCAAGACGAAAGCTAAAGCAGAGAAGAAAGGAGAGAAGCAGGAGAAGAAAGCGCCTCCCCCTCAGGAGGACGCGAAGGTGGACGTGTCTCGTTTGGACCTGCGTGTCGGGCGGATCGTCACGGCGAAGAAGCACCCGGATGCTGATTCGCTGTACGTGGAGGAGGTGGATGTGGGTGAAGCGGCTCTGCGCACTGTGGTCAGCGGCCTCGTCAAACACGTCCCGCTAGAGCAGATGCAGAATCGCATGGCAGTGTTCCTGTGTAACCTCAGGCCAGCTAAAATGAGAGGAATTGTGTCTCAGGCCATGCTCATGTGTGCCAGCACTCCGGACAAGGTGGAGATCCTGGACCCACCCAGCGGGGCCGAGCCTGGGGAACGAGTCACTTTCCAGGGATTTCCAGGTGAGCCTGATAAGGAGCTGAACCCCAAGAAGAAAGTGTGGGAGCAGGTGCAGCCTGATTTACGCACTGATAACCAGCGTGTGGCCAACTACAAGGGGGCCGCCTTCGAGGTCGCCGGGAAAGGAGTTTGCAAATCTCAAACCATGAGCAACACTGGCATCAGATAAAAGCCTCCGAACCTTTGGAAGTTCAGGAATCTGAAGTTAATGAGAAATGAGTCTGTATTATCTGTAAGGCTTtctaaaatgacaataaagaattTGGACATCA
>XM_026938831.2
aagctATTTGGGACCCAGGTTAAATTGCATCAGTAGGCTCATAGTAGTTAGGTCCTAAAATGAAAGCGCTCTAATAATAGAGTGACTATTCAACATTCCTGTTCAAGTGAACATCAGAGTTCTTGGCACGCTCCTTATTCAGGATGTCAGGCCACACACCCTCGCTGATGAGACTGGAGCAGAGGGCAGCCGAGGCGGATCAGATCATCGAGTACCTCAAACAGCAGGTCCAGCTACTGAAAGAAAAAGCCATGGTGCAGGCCACcatgagagaggagaagaagctGATGGTGGAGAACGCCAAGCTGAAGAAGGAGATTGAAGAACTGAAGAGGCAACTCCTcgagaaggaaagaaggagaggAGTGCCAGTGCCTATGCCCTCAGGAGACTCGAGTGTCCAGTGTGTGTCTAAGCCTTCAGCACCAGAGCCGACAGCTAAACCAGCTCCTGCAGCTCCGGCCTCCACTGTTCAAAGCCCTCCAGCCAACAGCACCGAGGCCAAGACGAAAGCTAAAGCAGAGAAGAAAGGAGAGAAGCAGGAGAAGAAAGCGCCTCCCCCTCAGGAGGACGCGAAGGTGGACGTGTCTCGTTTGGACCTGCGTGTCGGGCGGATCGTCACGGCGAAGAAGCACCCGGATGCTGATTCGCTGTACGTGGAGGAGGTGGATGTGGGTGAAGCGGCTCTGCGCACTGTGGTCAGCGGCCTCGTCAAACACGTCCCGCTAGAGCAGATGCAGAATCGCATGGCAGTGTTCCTGTGTAACCTCAGGCCAGCTAAAATGAGAGGAATTGTGTCTCAGGCCATGCTCATGTGTGCCAGCACTCCGGACAAGGTGGAGATCCTGGACCCACCCAGCGGGGCCGAGCCTGGGGAACGAGTCACTTTCCAGGGATTTCCAGGTGAGCCTGATAAGGAGCTGAACCCCAAGAAGAAAGTGTGGGAGCAGGTGCAGCCTGATTTACGCACTGATAACCAGCGTGTGGCCAACTACAAGGGGGCCGCCTTCGAGGTCGCCGGGAAAGGAGTTTGCAAATCTCAAACCATGAGCAACACTGGCATCAGATAAAAGCCTCCGAACCTTTGGAAGTTCAGGAATCTGAAGTTAATGAGAAATGAGTCTGTATTATCTGTAAGGCTTtctaaaatgacaataaagaattTGGACATCA

Function

symbol description
aimp1 Enables GTPase binding activity; protein homodimerization activity; and tRNA binding activity. Involved in cell-cell signaling; leukocyte migration; and negative regulation of endothelial cell proliferation. Located in cell surface and cytosol. Part of aminoacyl-tRNA synthetase multienzyme complex. Implicated in hypomyelinating leukodystrophy 3.

NR:

description
aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000049 tRNA binding molecular_function
GO:0004825 methionine-tRNA ligase activity molecular_function

KEGG:

id description
K15437 AIMP1, ARC1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938824.2 True 1180 mRNA 0.54 7 6824909 6844491
XM_026938831.2 False 1173 mRNA 0.53 7 6824909 6844103

Neighbor

gene id symbol gene type direction distance location
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 108646 6700324 ~ 6716263 (-)
LOC117596878 LOC108263069 coding downstream 164918 6643933 ~ 6659991 (-)
LOC113541261 LOC108263069 coding downstream 183287 6623469 ~ 6641622 (-)
herc5.1 NA coding downstream 204027 6604574 ~ 6620882 (-)
LOC113542150 LOC108263070 coding downstream 222765 6584785 ~ 6602144 (-)
npnta npnt coding upstream 98206 6942697 ~ 7006034 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding upstream 172966 7017457 ~ 7119620 (-)
LOC113538928 LOC108261848,LOC108262968 coding upstream 474608 7319099 ~ 7325006 (-)
LOC113542008 LOC108261848,LOC108262968 coding upstream 480883 7325374 ~ 7338431 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 517424 7361915 ~ 7384163 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding downstream 27289 6794579 ~ 6797620 (-)
G41768 NA non-coding downstream 144636 6677130 ~ 6680273 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding downstream 286359 6535704 ~ 6538550 (-)
G41563 NA non-coding downstream 453043 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 522821 6295232 ~ 6302088 (-)
G41938 NA non-coding upstream 96749 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 167602 7012093 ~ 7012306 (-)
G42008 NA non-coding upstream 172274 7016765 ~ 7017405 (-)
LOC117596848 NA non-coding upstream 296608 7141099 ~ 7142302 (-)
G42173 NA non-coding upstream 469177 7313668 ~ 7315596 (-)
gab1 gab1 other downstream 1005396 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1596942 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1918670 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2215459 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3790356 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 316983 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 594413 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1290150 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1625495 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1625867 8470358 ~ 8470429 (-)

Expression


Co-expression Network