antxr1d (LOC108263270,LOC108443423,LOC106589351,LOC107668779,LOC107708254,LOC107588727,LOC107673963,LOC107757100)


Basic Information

Item Value
gene id antxr1d
gene name LOC108263270,LOC108443423,LOC106589351,LOC107668779,LOC107708254,LOC107588727,LOC107673963,LOC107757100
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16398555 ~ 16422200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938843.2
AGTGTGCACTAGAGGAGGGGCGATTCAGGATGGTTTGGAAGCGGCCACTCGGATCACTGCGGCATTTAACACGCTGACAGCTCCATGTCATCTGGGTGGAATATGCTCGCTGGGAAagctttgtttcttttctgaGGAATTATGAGAGATCTGCGTGTTGTCGCTTGTGTTGTCTGGGATTGAATGAGTTGTCTGGGGAAAGATGGCGCGCCCTCTGCGTAGCTTTGGTGTGGCTGTGGCTCTGTTAGGAATGGCGATGGTCACACTTCCAAATGGAAAAGCTGAGCCTAATGTTAAAGAGGAGGAGAGCTCTTGTCAAGGTGCCTTCGACTTGTATTTTGTCCTCGACAAATCTGGAAGTGTCAAAAACCACTGGAATGAGATCTACTCCTTTGTGGAACATCTTGCAGAGAAATTCACAAGCCCAATGCTAAGGATGTCCTTCATTGTCTTCTCTACGCGTGGAGCTATCATTATGGGACTAACTGAAAATAGGGATGAGATTACCAAAGGCCTGAGCGTATTAAAGAAGGTGGTACCAGGAGGTGACACATTTATGAATCTTGGATTACAAAAGGCAAATGAACAAATACGTCGTGGAAATTATGGGACAGCCAGTGTTATCATTGCTTTAACGGATGGAGAGTTAAATACAAATCAGTTCATCACAGCACAGCAAGAGGCATGGAGGGCCAGATCTTTGGGAGCCATAGTGTATTGTGTGGGTGTGAAAGACTTTAATCAAACACAGTTGGCTACCATTGCAGACACCATTGAACATGTGTTTCCTGTTGTGGGAGGCTTCCACGCCCTGAGGGGAATGATTGATTCGatCATCAAAAAATCATGCATTGAGATTTTAGCAGCAGAGCCatcaagtgtgtgtgctggagAGGCATTCCAAGTGGTGGTAAGAGGCAATGGCTTTTTGTACACCAGAAACACCAATCAGGTCTTGTGCAGCTTCAAAATCAATGACACAGTCACAGTGAaTGAGAAGCCTGTAAACATTGAAGACACACTTCTGCTTTGCCCAGCACCAGTTATAGATGAAGTTGGAAAGGTGATATATCTTCAGGTCAGCATGAATGAGGGCTTGTCTTACATCACTAGTTCAGTGCACATCACCACTAGTGCATGTTCTGATGGCACCATTCTCCTCATTTCATTACTGGTGATCTTCCTGCTCCTGGGTCTGCTGCTGATGTGGTGGTTCTGGCCTCTGTGCTGCACTGTGGTCATTAAAGAgccacctcctccaccaccacctgAGCCTgagtctGATGATGAGAATGGGATGCCAAAGAAGAAGTGGCCTACAGTTGATGCCTCTTACTATGGGGGCAGAGGAGTTGGAGGCATTAAAAGAATGGAGGTACGCTGGGGGGAGAAAGGCTCTACAGAGGAAGGCGCTAAGCTGGAGAAACCCAAGAATGCAGTGGTGAAGATGCCTGAGCAGGAGTTTGAGCCTTATGAGCCCAAACCGAGGAGACCGACAGCACACCGGTCTTCGCAACAAAGGAGGTGGTACAGTCCCATTAAGGGGAAACTGGATGCTCTGTGGGCTCTGCTCCGCCATGGGTATGACCAAGTGTCCCTCATGAGGCCCCAGCCTGGAGATCAGGGCCGATGCATCAACTTTACTCGAGTGAAAGACGAGGCAGTCAGGGCTCCACCGCGCAGCCCTCCTCCATCTCCACCACCCCCAGCAGAGCACCGGCCCCTGATACACCCCTCCACCTCAGCACCTCCCAACCAACCAGCCCGCTCACCACCCAGACCCCCACCGGTGCGATCACCCCATGGACCCCCACCATCACGAGCACCCCCAAGACCCCCTCCTTCTCTTCCCCCACCCTGCCCTGGGAACCAGCACTGAGAACAATGCAGAATCCTAAGCGCCCTAAGCTAAGAGTTGTTGCtggacagcaaaaaaaaagtcaactacTGATTATTCCCGGAGATGGATGAGATGTGATCTAACTTACTTAGCTGGGCTTTGGGTCTGCTTTAAAAGAATCATATTGTTTGTGAATTATCACATTTTATGTAGTCAGTATGTGTAAGTCTTTGAAAAGTTTTTGGGCTTGAAAATGAAACTGGCATTAATGTATTACATGGATGGATGACTGAAGGTTTTGGCTGAAAGCTGAAGAATCAAGGGTTTAAGCATTTTGAAGTGTAGATTAGTCAGCTGTAAGTAATTTCCTAAGGCACTATCCTTAGATCACTTGATTGGACctgtaaaaataaagtaattgcAACTGCAGGGCAGTTCCATCCTCTAATTTATTTAGCCTTGGTTTCCTGGAAAGCACTTGAGCATAGAATGACAGGGTGTCCACCACTGTTATAGGACACTAAGCATGGCCtacttttgtaatttttttaaaactgtattgTGGAAGGGAATGCGGGGCTTTGATTTTTTCACATAGGATGCTTCAACTGCAGACTACatgataaaatttaaatgtaattgtgtTTAGTTACTTCTATTGTATATGAACAACTTTCTCtggaaacaaaacacacaaactaaatTGTTCCCTTCTTGTTCTCACACACAACTAACCAAATATCACTgccatttattaaacatttttgcaaCCGAA

Function

NR:

description
PREDICTED: anthrax toxin receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938843.2 True 2615 mRNA 0.46 19 16398555 16422200

Neighbor

gene id symbol gene type direction distance location
gdf10a LOC108262421 coding upstream 5517 16387991 ~ 16393038 (+)
ptpn20 LOC108262844 coding upstream 40171 16323553 ~ 16358384 (+)
si:ch211-223a10.1 LOC108263376 coding upstream 118965 16271297 ~ 16279590 (+)
vstm4a vstm4,LOC108263377 coding upstream 178717 16210560 ~ 16219838 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289,LOC107668808 coding upstream 209622 16183009 ~ 16188933 (+)
mettl18 mettl18 coding downstream 34218 16456418 ~ 16457819 (+)
golga7bb LOC108443489,LOC108263631,LOC107375346,LOC103368019 coding downstream 253920 16676120 ~ 16690614 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 385700 16807900 ~ 16824060 (+)
got1 got1,LOC107601049,LOC107665595 coding downstream 442608 16864808 ~ 16874716 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 475531 16897731 ~ 16948778 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding upstream 1517 16395005 ~ 16397038 (+)
G47265 c3h10orf71 non-coding upstream 195031 16192695 ~ 16203524 (+)
G47224 NA non-coding upstream 294505 16103836 ~ 16104050 (+)
G47084 NA non-coding upstream 363216 16033304 ~ 16035339 (+)
G47071 NA non-coding upstream 502476 15893581 ~ 15896079 (+)
LOC117596920 NA non-coding downstream 19862 16442062 ~ 16451765 (+)
G47431 NA non-coding downstream 37045 16459245 ~ 16459911 (+)
LOC117596359 NA non-coding downstream 70118 16492318 ~ 16531380 (+)
G47672 NA non-coding downstream 415982 16838182 ~ 16838401 (+)
G47852 NA non-coding downstream 576980 16999180 ~ 16999395 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 89657 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 161013 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 264553 16124627 ~ 16134002 (+)
cxcl18a.1 LOC108263637 other upstream 322905 16070714 ~ 16075650 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 601351 15793406 ~ 15797204 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other downstream 43739 16465939 ~ 16467350 (+)
LOC113541016 ankrd2 other downstream 551482 16973682 ~ 16977029 (+)
dlg5a dlg5 other downstream 1754541 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 2480238 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 2604768 19026968 ~ 19036644 (+)

Expression


Co-expression Network