LOC113541782


Basic Information

Item Value
gene id LOC113541782
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3350885 ~ 3353178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938948.2
AGTGCAGCATTTATAACCATTTAAATAGATAATAAACATAAACGTATTATCAACTTcagttttttgggttttttttgcttaattgtAGCTTGTGCTCTCCTGAACTTTCACTGCACTTCCTGTAAAGTTGGCAGTCAGTGATATGTCCTGGACCTCTAACCATCTGATTGTTGCTGTTCTGAGAAAACAATCTACAATTCTTTAAAAACAATGGTAGTCAAACACGACACCACTGGTCAAGAAGTGTGGAATGAGAAAAGCAAAAATTCTCCCTGATCAAAGGAAAGAGCAGAGTGCAAAGATTGGACTactCTCCTAGGAATTTACCATGAGCAACCCACGGACGCTGAAGGAACTGACTGATCTAAAGAACTCTAGATTTGGTCGACCTTATCCAAGACACGGCCTCAAGCTGCTGTATTGGTTTGCTAATGACTTCATGTtctttaacaacaacaataagatGTGCTGGCAGTACAATCCAAAAAACCAATTTTATGGCTTTCATCGATTTAAGAACAGAAAGGACAAAAATGGTGTTAAACTTCTGCCTGATGCGAACCTCACCTACTACATGGTGGGCAATCTGAACAGCGCAGGAGCAGACGAGATGCCCGATTACGTCCGGGAAGACTATGGTACTTTTAAAGATGGTAACAACATGGACCGCATCATAATCAGCGTTGATGATCAGGGCATTGACTGTGTCTATTTGACTGAGCACAGTGATCGGACAGATTTCAACAAAGAAGCCACCTACTGCATCAGCAAGGAGCTCATTATGATTATCAGGGAACTGACCTTAGAGGACTTTCTCTCGAAAACTGGGTATTCAAGATCGATAATGGACTACGGTCAGACAACTGGGCTTTCGAGACCACAAATGGACTACGGTCAGAGAACTGGGCCTTCGAGACCGCAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCAAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAAAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACACTGATCGATGTTCTGGGGAGGACGAGGTCACCAATTTTTGggatgaaaatgaatcaacaaacTGCTGCAGATGTGTCATACTTTAGACTCTGTGTGTAGGTAATATATCATCAAACTTACACAAACTATACAGGAATTTGAACCAATCACATGATTTCTGTCAGTTCTAGGAATATCTACAACAGCTAATTTGAGCTCTTGCTCTAACCTTAACTGTAGTCCTTCATACAAGTGAGACCGTATTACAACACAGCTgatgtgtatactgtataaactaAATATCCCATgcaataagtgatattttgagtaAAAACATATGATTGctatttttttcaaacatgaaatgttttcttattttt
>XM_026938964.2
AGTGCAGCATTTATAACCATTTAAATAGATAATAAACATAAACGTATTATCAACTTcagttttttgggttttttttgcttaattgtAGCTTGTGCTCTCCTGAACTTTCACTGCACTTCCTGTAAAGTTGGCAGTCAGTGATATGTCCTGGACCTCTAACCATCTGATTGTTGCTGTTCTGAGAAAACAATCTACAATTCTTTAAAAACAATGGTAGTCAAACACGACACCACTGGTCAAGAAGTGTGGAATGAGAAAAGCAAAAATTCTCCCTGATCAAAGGAAAGAGCAGAGTGCAAAGATTGGACTACAGAAGCTAACATGGACACGCCCACTGACTCAGGACGGATCAGTTTCTGTTTCCTGAGAAGTGAACGTGCTGTGAGGAAGCCTTAACAGAAATGAAATCAGAGACACAAGTGAAAACCAAAAGCGGGATAcgctccagatccaccgtgaccctgaccaagattaCTGAactCTCCTAGGAATTTACCATGAGCAACCCACGGACGCTGAAGGAACTGACTGATCTAAAGAACTCTAGATTTGGTCGACCTTATCCAAGACACGGCCTCAAGCTGCTGTATTGGTTTGCTAATGACTTCATGTtctttaacaacaacaataagatGTGCTGGCAGTACAATCCAAAAAACCAATTTTATGGCTTTCATCGATTTAAGAACAGAAAGGACAAAAATGGTGTTAAACTTCTGCCTGATGCGAACCTCACCTACTACATGGTGGGCAATCTGAACAGCGCAGGAGCAGACGAGATGCCCGATTACGTCCGGGAAGACTATGGTACTTTTAAAGATGGTAACAACATGGACCGCATCATAATCAGCGTTGATGATCAGGGCATTGACTGTGTCTATTTGACTGAGCACAGTGATCGGACAGATTTCAACAAAGAAGCCACCTACTGCATCAGCAAGGAGCTCATTATGATTATCAGGGAACTGACCTTAGAGGACTTTCTCTCGAAAACTGGGTATTCAAGATCGATAATGGACTACGGTCAGACAACTGGGCTTTCGAGACCACAAATGGACTACGGTCAGAGAACTGGGCCTTCGAGACCGCAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCAAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAAAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACACTGATCGATGTTCTGGGGAGGACGAGGTCACCAATTTTTGggatgaaaatgaatcaacaaacTGCTGCAGATGTGTCATACTTTAGACTCTGTGTGTAGGTAATATATCATCAAACTTACACAAACTATACAGGAATTTGAACCAATCACATGATTTCTGTCAGTTCTAGGAATATCTACAACAGCTAATTTGAGCTCTTGCTCTAACCTTAACTGTAGTCCTTCATACAAGTGAGACCGTATTACAACACAGCTgatgtgtatactgtataaactaAATATCCCATgcaataagtgatattttgagtaAAAACATATGATTGctatttttttcaaacatgaaatgttttcttatttttc
>XM_026938973.2
AGTGCAGCATTTATAACCATTTAAATAGATAATAAACATAAACGTATTATCAACTTcagttttttgggttttttttgcttaattgtAGCTTGTGCTCTCCTGAACTTTCACTGCACTTCCTGTAAAGTTGGCAGTCAGTGATATGTCCTGGACCTCTAACCATCTGATTGTTGCTGTTCTGAGAAAACAATCTACAATTCTTTAAAAACAATGGTAGTCAAACACGACACCACTGGTCAAGAAGTGTGGAATGAGAAAAGCAAAAATTCTCCCTGATCAAAGGAAAGAGCAGAGTGCAAAGATTGGACTAAGCTAACATGGACACGCCCACTGACTCAGGACGGATCAGTTTCTGTTTCCTGAGAAGTGAACGTGCTGTGAGGAAGCCTTAACAGAAATGAAATCAGAGACACAAGTGAAAACCAAAAGCGGGATAcgctccagatccaccgtgaccctgaccaagattaCTGAactCTCCTAGGAATTTACCATGAGCAACCCACGGACGCTGAAGGAACTGACTGATCTAAAGAACTCTAGATTTGGTCGACCTTATCCAAGACACGGCCTCAAGCTGCTGTATTGGTTTGCTAATGACTTCATGTtctttaacaacaacaataagatGTGCTGGCAGTACAATCCAAAAAACCAATTTTATGGCTTTCATCGATTTAAGAACAGAAAGGACAAAAATGGTGTTAAACTTCTGCCTGATGCGAACCTCACCTACTACATGGTGGGCAATCTGAACAGCGCAGGAGCAGACGAGATGCCCGATTACGTCCGGGAAGACTATGGTACTTTTAAAGATGGTAACAACATGGACCGCATCATAATCAGCGTTGATGATCAGGGCATTGACTGTGTCTATTTGACTGAGCACAGTGATCGGACAGATTTCAACAAAGAAGCCACCTACTGCATCAGCAAGGAGCTCATTATGATTATCAGGGAACTGACCTTAGAGGACTTTCTCTCGAAAACTGGGTATTCAAGATCGATAATGGACTACGGTCAGACAACTGGGCTTTCGAGACCACAAATGGACTACGGTCAGAGAACTGGGCCTTCGAGACCGCAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCAAGACCACAAGAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAAAGGACTACGGTCAGAGAACTGGGCCTTCGAGACCACAAGAGAACACTGATCGATGTTCTGGGGAGGACGAGGTCACCAATTTTTGggatgaaaatgaatcaacaaacTGCTGCAGATGTGTCATACTTTAGACTCTGTGTGTAGGTAATATATCATCAAACTTACACAAACTATACAGGAATTTGAACCAATCACATGATTTCTGTCAGTTCTAGGAATATCTACAACAGCTAATTTGAGCTCTTGCTCTAACCTTAACTGTAGTCCTTCATACAAGTGAGACCGTATTACAACACAGCTgatgtgtatactgtataaactaAATATCCCATgcaataagtgatattttgagtaAAAACATATGATTGctatttttttcaaacatgaaatgttttcttatttttc

Function

GO:

id name namespace
GO:0006833 water transport biological_process
GO:0008146 sulfotransferase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938948.2 False 1483 mRNA 0.42 3 3350885 3353177
XM_026938964.2 True 1653 mRNA 0.42 4 3350885 3353178
XM_026938973.2 False 1649 mRNA 0.42 4 3350885 3353178

Neighbor

gene id symbol gene type direction distance location
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding upstream 25243 3307834 ~ 3325642 (+)
LOC113543098 tapbp coding upstream 44562 3296533 ~ 3306323 (+)
vegfc vegfc coding upstream 97522 3193301 ~ 3253363 (+)
LOC113541301 NA coding upstream 1151350 2193949 ~ 2199535 (+)
LOC113544637 NA coding upstream 1166237 2174587 ~ 2184648 (+)
LOC117596854 NA coding downstream 3244 3356422 ~ 3358975 (+)
LOC113541773 NA coding downstream 20035 3373213 ~ 3376116 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding downstream 81167 3434345 ~ 3503120 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding downstream 219249 3572427 ~ 3641748 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding downstream 291300 3644478 ~ 3668492 (+)
G38962 NA non-coding upstream 919798 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 924285 2411201 ~ 2426600 (+)
G38895 NA non-coding upstream 1038434 2311651 ~ 2312451 (+)
G38826 NA non-coding upstream 1185400 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 1224218 2123461 ~ 2126667 (+)
LOC117596855 NA non-coding downstream 47617 3400795 ~ 3403106 (+)
LOC117596918 NA non-coding downstream 161923 3515101 ~ 3525121 (+)
G40287 NA non-coding downstream 330165 3683343 ~ 3685205 (+)
G40374 NA non-coding downstream 511518 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 776937 4130115 ~ 4130322 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1259542 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1353620 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2126284 1194219 ~ 1224601 (+)
trmo trmo other upstream 2162291 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2208951 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 478689 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 1311138 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1910404 5263582 ~ 5357860 (+)
G41047 NA other downstream 1965356 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2542253 5895431 ~ 6228685 (+)

Expression


Co-expression Network