LOC113541868


Basic Information

Item Value
gene id LOC113541868
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33587893 ~ 33592807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939043.2
CGTGGTTACAGCAGAAGTATATAACTCTTGGAGCACACAGTCAGCTGTTAAAGAGCTCAGTGCGGTGGAGTGCTCGTGTGTTAGTTATACTCATctgctgttcattcattcatacacacacacacacacacacacacacacaacatctccAGACCTGAAGCAGGATATGAGAGTTAAAACTAGGAGGATTTCAGCACcgactctctccatctccatcttctttttcttcttgtgcTGGATGGAGTTTCCTCTTACACTGAGTTTGAGATCTCGGTACCCACTCGTGTACAGATGGCTGTGTACGGCGAGGCGGTGCTTCTGTCCTGCACGTTCCCAGTGAGCGGCTCGTGGGACGCAGGCAGCAGCGTGATCACGTGGCAGCGCCACCTAGAGGTGGTCCACAGTTTCTTCCACGGCCGAGACCAGCTGCAGTACCAGAGCCCGAGATACGCCAACCGCACCAGCCTGTTCCACCAGGAGATGAACAAGGGGAACGCATCGCTCAGGCTGGACCGTACCACTCTGGAGGATGCGGGGGAGTACACCTGCTCCATCAGCACTCAGCTGGGCAGCCAGATGAAGAGCTTCGGCCTCAAAGTAGCAGCGTTCTACACCGAGCCTCGTCTGCACATCTCCATGCTGAACGACGGCCACGTGGAGGTGCGGGTGACCTCAGAGGGCGGGTACCCCTCCCCCtcgctgcagtggctgatgggtaaCGAGAGCGACATCACCAACGTCACACACACGCAGCTGAGGCAGGACCAACACACACGTCTGTACAGCGTGAATAGTAAACTGAACCTGAGCGGCACCGTCAACTCCTCCATCACCTTCGTCATGAAGAACCCAGATCTGGGCCAGGAGATCAGGAGGAACATCGACCTCCTCTCAGaaaatgGAGGATTTGAGCAGAGCGAACGGCGAGCACTATTCATCGGACTTTCCATTGTTGGAGTTTCGTTACTAGCGCTGATCattttagtaattattattatccttcGACACCGGAAGATGAAGAAATATAACTCCCGAAATACTTCCGAGACTAATATAGAGTCATCAGCAGCTTCGACCCatcagacagaaacagagaaatctTCAACAGATGCAGCTGAGAGTATTACAGAAACTCTGTTAAAGATCCCAGAAGAGATGGTTAGATTAGAGCGATAAATGTAGTtttttattagatatttatttaatttagcttTAAATGTAAACTGTGAGTGCTCGTGTCACTCCACTGCTTTTTCCACCTGCGTGGAGTCACGGCCTCGAAACGACGTCTCCATCCTGATCACTACCTCCTGACATTCCTGCTTCTGTGCTTACAGAAACATTTGGACATTGAAGAATTTGGACATTAGTGTCTATAATGAATGTATGAACATATAAATGCCACGTCCCATCCGGGGTGTATTCTCCCGCGGGAAAGCTCCGGATCTGCTGCGACTCTGAGCAGTGTAAAgggcttactgaagatgaataaataacagCATCCTAGATATTCTGTAAAGAAAtgaattctttattttatttattttttactttaaattgtCTTCATGTTCATGTCAgtctatttttctattatttgaTTCATTCTGCATTTTCActaaattcctttttttcttgcacACTGATTACCTCACTGTGTCACATCACCAGATCATGAAGCTAAACTGTGACTCTGCCCACTGTTTAACTGGCCGCTGTTCTAGAAGTTTCTCTCTCATTTATCACTTTTACAGAATTCTTACTTCAAGACTTTAAAgtgcaaaaacaaaccaaacagctACAAGACGAGTCATGACATTATAACAATTTTAGAACcgaaaaaatgtcaaaaacaggaaacacgAGGTTTAGGTGAACTCCTGACACAGATGTTCACACAGATGTTGTGATTGGATCAGATCTCTGCGCTGCACTCGTTACTGCATTACTGATTCAGAATAAATGTTAGTGTTCAGTAATTACTGTACAATTttctataatttaatattaaattcagTCTTAAACAGTGGCAGCTACAATCTATAATATTTATGTGTTCAGAGTTTAAGAAAAATCCACAACGTTTAAGATGTAGAGCTGtgattttaaactttttgttgttatttgatAAATCACTCTTGCTGGACGAGAGGTCTGAATAAACGCATGTcgtttattattacttatataagctcttctttatttttaaagaactttACTTTTAGATTTCAAATAATGTTCAATTTTAGTGCCAGATTTTAAAGaattgattttatattattaaaaaatacatttaaattattttcagttatatataattatacagaTGTTCATTGTTgagcattttaataataatttgaaatgaCTATTGATTAAAACTTGtattttattcagaaatgaTTCTGAATGTCATGTTTGAACACTGTGGTGCTACTTTCAAACACTCAAACACCTTTTTCTGTGTTCATAGTGTGTTCTGGTGAATACGTACAGAAATGTGGAATATcagtaaattaataattaataaaattaataaagtttattgaTGGTCAATGACTTGCTGTGCAATATTATGAGTTATATTAAACTGAATTATGTTTAGAAGAATTTGAATATTGTCTATAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939043.2 True 2622 mRNA 0.41 4 33587893 33592807

Neighbor

gene id symbol gene type direction distance location
tacc3 tacc3,LOC108440911 coding downstream 71207 33507094 ~ 33516686 (-)
kif15 kif15 coding downstream 82568 33485013 ~ 33505325 (-)
tdrd9 tdrd9,LOC104966444 coding downstream 103811 33468023 ~ 33484082 (-)
six4a NA coding downstream 184169 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 200074 33385114 ~ 33387819 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 17650 33610457 ~ 33644218 (-)
lgmn lgmn,LOC100304954 coding upstream 52951 33645758 ~ 33656870 (-)
pcnx1 pcnx1,LOC108262680 coding upstream 71007 33663814 ~ 33692927 (-)
med6 med6,LOC107654960,LOC107602956,LOC107683373 coding upstream 101394 33694201 ~ 33698292 (-)
LOC117596872 NA coding upstream 172016 33764823 ~ 33769298 (-)
G57356 NA non-coding downstream 11046 33575286 ~ 33576847 (-)
G57354 NA non-coding downstream 15474 33571410 ~ 33572419 (-)
G57335 NA non-coding downstream 51918 33535478 ~ 33535975 (-)
G57220 NA non-coding downstream 120586 33465699 ~ 33467307 (-)
G57317 NA non-coding downstream 165419 33421824 ~ 33422474 (-)
G57368 NA non-coding upstream 64187 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 108413 33701220 ~ 33762528 (-)
G57378 l2hgdh non-coding upstream 109698 33702505 ~ 33704326 (-)
G57390 NA non-coding upstream 135449 33728256 ~ 33737485 (-)
LOC113541873 NA non-coding upstream 168711 33761518 ~ 33764287 (-)
LOC113542143 LOC108263078 other downstream 17657 33562778 ~ 33570236 (-)
trnag-gcc_5 NA other downstream 57896 33529927 ~ 33529997 (-)
mycla LOC108263077 other downstream 63074 33480348 ~ 33524819 (-)
G57322 NA other downstream 125551 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 145078 33423664 ~ 33442815 (-)

Expression


Co-expression Network