rdh14a (rdh14,LOC105895584,LOC104955673)


Basic Information

Item Value
gene id rdh14a
gene name rdh14,LOC105895584,LOC104955673
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32865245 ~ 32868355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939056.2
CGTGTTTACTCCAGGAGAGAGATGATGCGCGGTAAGACGGTGATCGTGACCGGGGCGAACAGCGGCATCGGGAAGGCGACGGCGGCGGAGCTGCTGCGGCGGGAGGCGCGGGTCATCATGGCGTGCAGGAGCCGGGAGAGAGGCGAGAGCGCGGCGCGGGAGATCCGCCAGCAGGCCGGTACCGGTACCGACACCGACACCGACACCGGGCGCGGAGAGCTGCTGGTCAGACTGCTGGACCTGGCGTGTGTGAGCTCCGTGCGCAGCTTCTGCGAGCAGATCAACAAGGAGGAGCCGAGACTCGACGTGCTGATCAACAACGCCGGGGTCTACCAGTGTCCCTACTCTAGAACCGAGGACGGCTTCGAGATGCAGTTCGGCGTCAACCACCTCGGCCACTTCCTCCTCACACACCTGCTCCTGGACCTGCTGAAGCGCTCGACGCCGAGCCGCATCGTCGTCGTCTCCTCCAAACTCTACAAACGAGGAGAGATCAACTTCGACGACCTGAACAGCGAGCGCGGCTACGACGGAGCGTCGGCGTACAGCCGCAGCAAGCTGGCCAACCTGCTGTTCACGCTGGAGCTCGGTCGGCGGCTAGAGGACACGGGCGTGACGGTCAACGCTCTCACGCCCGGCATCGTCAGGACCAACCTGGGACGCCACGTCCGCGTCCCTCTGCTGGCCAAACCGCTCGTCAGCCTGGCCTCGTGGGCGCTGCTCAGATCGCCCGAGGAGGGAGCGAGGACTGCCGTTTATCTCGCCTGCTCTCCGGACGTGGAAGGGGTTCAGGGGAAATGTTTCGCTGACTGCCACGAGCAGAAGCTGCTCCCTAAAGCCACGGACGAGGACGTGGCTAAAAAACTGTGGGACATCAGCGAGGTGATGGTGGGCATCACGACGTAGAACAGAAATCACAATCAGGTTTCATATCGTCATAACGATAAATCCCAGTTTACGCTTTCATTATAGTGtctctgaaaataaataaataaaaattttaaatatattcttCCTCAATACAATAAGGAAAAAATGCCAGAAATGTCTGTTTAAccagaaaagaaataaacatgtataaaaatattaaaaacaattaattaattgcgTTAAATGATTTTCGCCAAGCAGTCGACATTACTCAGGCTGTTTCAGATtgtttttatgaatttatttttgccagaacatgtttaaaaaattcttcTTTCCTAAATCTAAAAAGAATGCAGCAGAAATATCCAGCATGTcatcagctaaaaaaaaacaaacaaacaatatattaaaatatttaaacggATTAATTACAATAATGATTGATGCACTAagccttgtttttgtttgattgCCGAGagtgtataaaatattaataaaaattattaattgcGTTAGATTAATTGTAAAACAGCTCATGTTACTCAAagagattttttgttttgtttgttttattaatgtgaaaatcCTTCCTTCCTAAATCAAGAGAATGTgccaaaaagagagaaaatattaaacgttaaaatgttaaaatattacattgatCACATTAGAGGATTGATTTTTGTTCCAGGACAAAAACGGTAAATTAAACTGTTTCTATTTTCTGAATGAACACCTTTCGAAAAAGCACAAATGAGTGAATTATTGCGAACAGATGTAATGATGGAGTGATGACACAATGCCAAATTGTTTTTCTGGAAATAAAGTGTGATGTGTTgagagaaatga

Function

symbol description
rdh14 Enables NADP-retinol dehydrogenase activity. Involved in osteoblast differentiation. Located in cytosol; endoplasmic reticulum; and nucleoplasm.

NR:

description
retinol dehydrogenase 14-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11162 RDH14; retinol dehydrogenase 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939056.2 True 1722 mRNA 0.47 2 32865245 32868355

Neighbor

gene id symbol gene type direction distance location
mtres1 c3h6orf203 coding downstream 100901 32759671 ~ 32764344 (-)
sobpa sobp,LOC107706905,LOC107588585 coding downstream 155034 32669506 ~ 32710211 (-)
arg2 arg2 coding downstream 329626 32525404 ~ 32535619 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding downstream 348611 32509524 ~ 32516634 (-)
si:ch211-10a23.2 NA coding downstream 382231 32478301 ~ 32483014 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding upstream 227301 33095656 ~ 33104243 (-)
LOC113542112 NA coding upstream 418446 33286801 ~ 33293343 (-)
hif1aa hif1a coding upstream 437957 33306312 ~ 33321663 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding upstream 460650 33329005 ~ 33336795 (-)
dhrs7 dhrs7 coding upstream 488675 33357030 ~ 33361865 (-)
G57169 NA non-coding downstream 64773 32799111 ~ 32800472 (-)
G57126 NA non-coding downstream 89648 32729884 ~ 32775597 (-)
G56860 NA non-coding downstream 151312 32713729 ~ 32713933 (-)
G56834 NA non-coding downstream 200902 32663881 ~ 32664343 (-)
G56827 NA non-coding downstream 217309 32644692 ~ 32647936 (-)
G57215 NA non-coding upstream 199179 33067534 ~ 33068685 (-)
G57267 NA non-coding upstream 366311 33234666 ~ 33235712 (-)
G57275 syt14 non-coding upstream 388874 33257229 ~ 33257792 (-)
G57290 NA non-coding upstream 428464 33296819 ~ 33298313 (-)
G57292 NA non-coding upstream 435215 33303570 ~ 33305518 (-)
G57124 pdss2,LOC102782659 other downstream 136504 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 203633 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 476101 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 510745 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 575638 32239601 ~ 32289607 (-)
G57210 NA other upstream 150923 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 469048 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 555309 33423664 ~ 33442815 (-)
G57322 NA other upstream 586867 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 611993 33480348 ~ 33524819 (-)

Expression


Co-expression Network