ccdc28b (ccdc28b,LOC107585497,LOC107675524,LOC107705395)


Basic Information

Item Value
gene id ccdc28b
gene name ccdc28b,LOC107585497,LOC107675524,LOC107705395
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32339234 ~ 32345727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939064.2
TATTTCTTGTTGCTCCTGGCGTGACCGAGCGCGTGCAGTGGAGGAGAAGCAGGTCATGTAGGAGTTATTgtgattattgtgattatttttaCTGCATTTCCTGGAAGGGGAGCGGTGTGACATGGAGCAGAGTGATGTGCTGATCGCAGGGTTTCCATGAGAAGGGACGCACTTAGAAGACATCCCGTCTACTATCGTCTCTCAGCCAGCCGTACAGTAAAAACAGCCTGAAAAATGGAggacaagaggaagaagaggagtcCCAAAGTGTCTCTCCCCCAACCACCACCTCCACCGGTGAACCCGCGCAAACTCTCCGTCCTCCCCGCCAGCAAGAGCGCCACCTTCTCGCTGGGTCTCCCCCAGCCGCCCTCCCCTAAACCCCGGGGCAAGTACAAGAGATCCGTAGGAGCCATGGGGACTGGCAAAGAAGTGCTCACTGTGCCCATGCTCCCTCCCAAGGCCACGAGCCGGCCTCACAGAGAGAGACCCCGAGCGCCTCAGCCGGCCGGCCCCAGCCGAGTCACCCAGTCCTCCTCTCCTCTGCAGCACTCCTTCCTCACTGACGTCTCGGacgtgagagagatggagggaggacTCCTCAACCTGCTCAACGACTTCCACTCAGGAAAACTGCAGGCCTtcgGTAAGGTGTGTTCGTTTGAGCAGCTCGAGCACGTCCGGGAGATGCAGGAGAAACTGGCTCGCCTTCACTTCAGCCTGGACAGCCATGTCGAGGAGCTCTCAGAGGACCAGCGGAAAAGTGCTTCAGACCGCAACCTGGAACACCTGCTCtcaaatCTGGAAGAGCTCAGCAGCTCCATACAGAAGTTACACCTGGCAGAGAATCAGGACTTACCCAAGGCCTCTGATCCCTGAGACGgagagcaaagcaaagcaaTCTGCTGGCATCCTGGAGCTGCTGATGTCATTGCTACACCTCAATCAGCTAAGCTAAAACTGCACAGAGaagcaga
>XM_034301663.1
TATTTCTTGTTGCTCCTGGCGTGACCGAGCGCGTGCAGTGGAGGAGAAGCAGGTCATGTAGGAGTTATTgtgattattgtgattatttttaCTGCATTTCCTGGAAGGGGAGCGGTGTGACATGGAGCAGAGTGATGTGCTGATCGCAGGGTTTCCATGAGAAGGGACGCACTTAGAAGACATCCCGTCTACTATCGTCTCTCAGCCAGCCGTACAGTAAAAACAGCCTGAAAAATGGAggacaagaggaagaagaggagtcCCAAAGTGTCTCTCCCCCAACCACCACCTCCACCGGTGAACCCGCGCAAACTCTCCGTCCTCCCCGCCAGCAAGAGCGCCACCTTCTCGCTGGGTCTCCCCCAGCCGCCCTCCCCTAAACCCCGGGGCAAGTACAAGAGATCCGTAGGAGCCATGGGGACTGGCAAAGAAGTGCTCACTGTGCCCATGCTCCCTCCCAAGGCCACGAGCCGGCCTCACAGAGAGAGACCCCGAGCGCCTCAGCCGGCCGGCCCCAGCCGAGTCACCCAGTCCTCCTCTCCTCTGCAGCACTCCTTCCTCACTGACGTCTCGGacgtgagagagatggagggaggacTCCTCAACCTGCTCAACGACTTCCACTCAGGAAAACTGCAGGCCTtcgGTAAGGTGTGTTCGTTTGAGCAGCTCGAGCACGTCCGGGAGATGCAGGAGAAACTGGCTCGCCTTCACTTCAGCCTGGACAGCCATGTCGAGGAGCTCTCAGAGGACCAGCGGAAAAGTGCTTCAGACCGCAACCTGGAACACCTGCTCtcaaatCTGGAAGAGCTCAGCAGCTCCATAAGTTACACCTGGCAGAGAATCAGGACTTACCCAAGGCCTCTGATCCCTGAGACGgagagcaaagcaaagcaaTCTGCTGGCATCCTGGAGCTGCTGATGTCATTGCTACACCTCAATCAGCTAAGCTAAAACTGCACAGAGaagcaga

Function

symbol description
ccdc28b Acts upstream of or within cilium assembly. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human CCDC28B (coiled-coil domain containing 28B).

NR:

description
PREDICTED: coiled-coil domain-containing protein 28B-like

GO:      GO:0042384

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939064.2 True 977 mRNA 0.56 6 32339234 32345727
XM_034301663.1 False 973 mRNA 0.56 6 32339234 32345727

Neighbor

gene id symbol gene type direction distance location
iqcc NA coding downstream 2757 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 8018 32315458 ~ 32331216 (-)
jag2a LOC108263062 coding downstream 108239 32191850 ~ 32230995 (-)
esr2b esr2 coding downstream 150387 32131447 ~ 32188847 (-)
gphb5 gphb5 coding downstream 332584 31996509 ~ 32006650 (-)
LOC117596868 NA coding upstream 20583 32366310 ~ 32367790 (-)
nusap1 nusap1 coding upstream 30237 32375964 ~ 32381037 (-)
si:ch211-10a23.2 NA coding upstream 132574 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 163797 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 179677 32525404 ~ 32535619 (-)
G56670 NA non-coding downstream 29279 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 94944 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 131227 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 266736 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 405644 31859807 ~ 31933590 (-)
G56661 oip5 non-coding upstream 35400 32381127 ~ 32381831 (-)
G56668 NA non-coding upstream 54188 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 69182 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 298965 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 318154 32663881 ~ 32664343 (-)
brf1a brf1 other downstream 49627 32239601 ~ 32289607 (-)
G56303 NA other downstream 500999 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 508302 31678383 ~ 31830932 (-)
G56272 NA other downstream 509750 31827814 ~ 31829484 (-)
G56150 lclat1 other downstream 738549 31563555 ~ 31600685 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 1028 32346755 ~ 32354500 (-)
ndufaf1 ndufaf1,LOC107588570 other upstream 28609 32374336 ~ 32389144 (-)
slc66a3 pqlc3 other upstream 308109 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 370100 32715827 ~ 32728741 (-)
G57210 NA other upstream 673551 33019278 ~ 33099572 (-)

Expression


Co-expression Network