plpp4 (plpp4)


Basic Information

Item Value
gene id plpp4
gene name plpp4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26529006 ~ 26620986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939066.2
CACAAACGCTCCTGTTGCTGCTTGTACCTGAGAAAACaactgacaaaaaaacaaacaaacaaacaaacaaacctgtgAGTAATTTTCAACGTATTGTTTTGGAAGTACCGTGGTGTCCAGGTGTGGGCAGATAAATCGCTTATCAGTGTGTGGGAAGAGGTTTTAGTGGAGCAGAAACACGCACTCGAGCGCGCGACAGCGTTTCCAGTCCACTTTACTGCCATGCTGCATCACCTGGATATGcttttcagctttcttttcatcccatgaccttttttttttaatatatatgaaTTGAAATTCAGTTAGTTCATGGACAACATCACTGGAACGCATTATGGATTAAAGACGGACACCTAACGAGCACCAAGGACCaactattattataaatatttatagcctagatatacatatatataaaaatatctttttttttgcatccaaaCGCGCTGCATCCTCACTTCCATCAGCATCTTATTGGCGATGCTCAAGCGGTAAAGGACGACACAGGAGCGCAGATGACTTTCACGCAATTTCTGGAtgacatttgcatttgcaaatagaacgagaagagaagagaagagcagagaaaagaaagagaaagcaagaagaTCATGAAGATGTCTCCTCCAGACCGAAGGAAAAGCATGCGCGAGCTGGCGCTGGAGATCGGAATCCGAGTGCTGCTCTTCGGAGTTTTcgtgTTCACTGAGTTCCTGGAGCCATTTGAAAGAGTTATTCAGCCTGAAGAGCTGTGGCTCTACAAGAACCCTCTGGTGGAATCAGATCTCATCCCCAAGAGAGTCATGTTTGCTATATCGTTCCTGACCCCCCTGGCTGTAATCTTTGTGGTGAAGATCATACGACGAACAGATAAGACCGAAATCAAAGAGGCATGTTTGGCTGTGTCTCTCGCACTAGCACTGAACGGCGTCTTCACAAACACCATTAAGTTGATAGTTGGCAGGCCAAGACCAGATTACTTTTACCGCTGCTTCCCAGACGGCCAGGTGAATGCGAAAATGCTGTGCACAGGAGAACCAGGCCTGGTGTCTGAGGGCCGAAAGAGTTTTCCCAGCAGCCACTCATCCTTTGCTTTCTCTGGCCTGGGCTTCACCTCCTTCTACTTAGCAGGGAAGCTGCATTGTTTCACAGAGAGTGGGCGTGGACGCAGCTGGCGCCTCTGTGCCATGATCCTGCCCCTCTACAGCGCAATGATGATCGCTCTGTCCCGCACCTGTGACTACAAACATCACTGGCAAGACGCCTTTGTCGGTGGTGTGATCGGCCTGCTGTTTGCCTACATCTGCTACCGGCAGCACTACCCACCTTTTCTCCACACAGACTGCCACCTGCCTTATGCCAGCCTGGCACTGAGCACCACCCGACATGCGCCAGTCTCCCAGGAGGTGCCTCAGGCTACGGACAATGCCACGAGCCTGCCTCTGGAGGGCATCACCGAGGGGCCTCTATGACTAATGGAGCCCCCCTCCTTCACCGCCCGCTTGGTATGACCCACACAGACTGGCTGACTCTTGTACATTCCAGTGGGTCGTCCAGTTCCTGTTCATTTTATCCTTCACTGGTACTCTTTCTTTTTCCGTCTTGTGTTTAATACTGATTTACTAGCCTCATTTGGGATACATTTACACTCACTACACTTGTTGATGGCGAGTGTAGACCATTTCTGTGTAGCAGGAACGAGAGAAtaataaagagagaggaagactcGTTGAAGTGGCCTGTATAAATTGAGATGATTAATGATAGCACAAAACGAAGGCAAAGTCCAGCATGTTGTATTTTACTATTACAGATATGGAAATGTTCagtgtataatatgtataataatgtgaGGTGATTGGAGGGAAGGCATTGTAATAGAAGTCACAATCTGTCTATTTTGAtgtttcttttatcttttctcATTACTTTTCCAGTTCTgacttatttgttttattacactgggcagaaaaaaaatgcttttcagAGATACTTGGTGAACTCGCTGGTTGTCCATGGTAACATTCAGATATATATAGATCTCCTTCTCATTTCTCTGTCCCTTCTTTTCGGTTTCAATAGTTTGACTTACTTTGACCTGAGTCCTTCAcctcttctgtttatttttcttattttctgccACATACTCCTGGCTCGACAGTCAATACTTCCCTATTTCTTTATTCTATCCCCCCCCCCAccagtctctgtctctattcCTCACAAATTATCAGTGGCAGTGGTGCCACActgactctgtctctctgcctctttcttattttctctaTCCCCTTTCTCTTGATCTCCCTTATTATCTTATTTCTTCATTCGCCCGCcaatttccttttatttgtcaTGCCAGGGTTGCATAGAAATTTGAATACAAATGACAGCTAAACACTGTATGGTTGATATCAAGTACGCagagtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgttggaGAAGGGCGGAAACCCCAATCTGAACCTGCATTAATTTCCATTATGTGAGGAGTGGCTGCCACTGTTAATCAGCACATTAGAGCAGAATGGAAAAGGAAGCTTCCAGGCTCTTACTTAGTCATGAGTGTGTTCCCTGGGCTGGCTGTGACCTGCCACAATCAAACCCCTAATGGGATTATTCATTAACATGCCACTAAGTACTTGTGTCTTAATAGGGCAGACTGTGGTGATTAAACTGAATGGAGAGctacagtattttatttcatcCCTCAAAAGCTTAAGCTGGTGTCTGACAAGTAACTACTAAATGGCACTGCATATAACGTTATACACTGTCAGTTAATGTGCTTGCTACACCATACTTCCTGGTTGTTCTTATGAGTGCTAGGAAATAAGTGTTAATACTTTTGAGAATGCAGATCATACTTAGCTGGTCATCTATTTCTGTCTCACTAAGAGGAAAATAAAGCAACCCCGTGAACATGGACGAATATAACAAAGTAGGAAAAGTTGTCTGTTAAAACAGACATGCGGCAGCTTATTTTTCCCCCAAGCGTCTggtggttactgtaaaaccaTCAGTTTCTGACTTGACTGCGCTGTTGGAACGCGTCTGAGTTGACTGTTGCAGGAGAGCATACAGTGTTTTAAGcactttataattaatattaccATTAAACTGATTTGCAAAGTGTCAGATTTGACTTTTTGTGTAGGCATATTTAATCTATTTTGCTGTCAAAAGGTTCAtcccttttttcacttttggatgAAAAGTGATGTTTTTGACAATATTAAGCCAAAATCTTTTCGGTGCAtccttaataaatatagttaactgatgttaactcaATACTTGTCTTGGGTTAGATAAGTCGAACATACATCgaaagattttatttcacattacagAACTCAGAACAGACTCTGTTTACCTTGATAGAAAGCAAGGCCACATCTTTCAAGCGAGAAAACCGAGACGAGCCGAAAGCACCGGCCGAAAGATTACTTATGCGAGATGGAgatgattaattaataatgattgTTAATCACTGCGGATTCATATGTCGAGTGGCTCTGCTGTCATtattgaggagaaaaaaagaaaatgacatgaaaatacacaaacataacaAACATTCAAAACGTTTTTGAATACGttttacagcattacagcatAGAGCTATGTTACTTTCAATAGAGTGTAAGCTTTTGAAACATTACCTATATAGCTGTTTTAGGCTGTTAGAGAGTTAGCCTCATGCAACTGctctatttatttctcttttacaaATGGGAATATGCAAACAAAGGACTATGGCTATGCACCACAAGTTTCTTAACATATAGCTCTGTTCTCTGACAGGCGTCTGTGGGTGTTTTAAAGGAATTTAATTACCTTTGCTgtcacattttaaaagacaaaaggGTTTGTGCAATTTACGGGCTAAAACTGTGCAATATCATTGCCAGtgaccagaaaaaaaagcaaaacaaaacacatagactggtgagagaaagaaataagtgGTGAAGGAGCACTGCTGCATTTGGAAGACAAACAGAGTGAACTATAAGTGACAGTTCTATACTTTGATTCAACTTTATCTACACCTGTTCTAAAACAGTGCTTATCTCTCCACTGTTTCTTTCATGGACCTTTTACAGTACCTGATCttgtgaattaataaaaaacgGAGTGGATAAAGTTGTATTGTAAGCTGCAAATGAAAGATTCCACTCCTTGGCCTAACTATTTGTAACTTTTCATACAAGTTGGCTTGTGCAAAGTCGTATGAATTGTTGAAGTGAACAATATCCATGACTGGACTATTCCCATAAGAAAAATCCCCACTGTGTCACTGACTGTGTGATTGCTAAAAGCGAACCCTTAAGCAAATGTCTGCTGGCAAGTACAGACCTCAGGCCTGTTTGAACATGACTTCTGATTACATCATCCGAAGACTTGCTATTGCAATCCTCAGCCGAGCTACATGCAGGCGGCTGAAGTCTTTGTCAGAGGCATTGCTTGTTCAAGAACTTCCTCTGATCTGTTGTCTTGATGTTTTGTTACACACGTTACACATTTTACAGAGGGATTTATTGCCCTCAGGACACTACATCGTGACAATTTGGATATAATTCAGAGCCTGTAATTCTGATTAGAATTAATTATGTATAAAAGAATATATAtctggggtccctggaggacaaCTGGtcaggccacagcgctctcactgctgcagcccaGGTTCAATTCCAACCTCAACCACTGgagttgcatgcaacagtgtgctctcagtgccagtccaaGCCCAGAtacaactggggagggttgcatcaggcatgcagcataaaaactgtgccgaatcaaatacacggaccaatgatccattgtggtgacccctaacgggatcAATGGATCAACAACAATGGAATATATATTTGGAATATAATGGAACGTTAACACTTAATTTAACAGTTTGTTACATTAAATACAAGGTGCAGATCTGCCAACCTTGAAGAGGAATGATGCATAGACATTTTCCAATATAGCCCTTTAACTATTCACTATTCTACAATAgaaacgagtgtgtgtgtgtgtgtatatatatatatatatacatatatgtgccTGTAAACATTTCTAGTCTCTACAGCATTCCTAAAACAGGCAAGCAgcagcttttttcccctaagCAATAGGTGGTTACTGTGAAACCCTGTATATACACGCTCTCACGTTTCTACTACGATGGACCTGAGTGCACTGCTGGAACACATCTGTGCTGACCCTGCAGGAGAGCAGAGAGCTTTCTAATGATCATTCCCGTTACAATGATTTGTAaggtgttagatttgacacttagTTGTActcctatttaatctttttttggtcaaaatttTGTGCCACTTTCAAGTCATTTTGGCCACATTTTTTTGGTTCATCCCCTGATAAAtttagttaactgatgttaactttaaacacacactatatggccaaaagtttgtggacactggACCATCAtgcccatatgtgggccttcgccaaactgttgccacaaagttagaa

Function

symbol description
plpp4 Predicted to enable phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation. Predicted to act upstream of or within phospholipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLPP4 (phospholipid phosphatase 4).

NR:

description
PREDICTED: phosphatidate phosphatase PPAPDC1A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18693 DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939066.2 True 5553 mRNA 0.42 7 26529006 26620986

Neighbor

gene id symbol gene type direction distance location
wdr11 wdr11,LOC102787883 coding downstream 61625 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 177855 26350129 ~ 26351151 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 418597 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 455252 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 517226 26001430 ~ 26011780 (-)
lhb LOC100304481,LOC108425477 coding upstream 8264 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 18563 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 66139 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 87533 26708519 ~ 26719590 (-)
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding upstream 99833 26720819 ~ 26725438 (-)
G53175 NA non-coding downstream 666 26527269 ~ 26528340 (-)
LOC113542010 NA non-coding downstream 22762 26505767 ~ 26506244 (-)
G53065 NA non-coding downstream 163648 26365138 ~ 26365358 (-)
G53051 NA non-coding downstream 173210 26286924 ~ 26355796 (-)
G53046 NA non-coding downstream 240073 26253345 ~ 26288933 (-)
G53210 NA non-coding upstream 47627 26668613 ~ 26668821 (-)
G53204 NA non-coding upstream 86716 26707702 ~ 26708397 (-)
G53216 NA non-coding upstream 99090 26720076 ~ 26720660 (-)
LOC113542110 NA non-coding upstream 117557 26738543 ~ 26741519 (-)
G53250 NA non-coding upstream 177693 26798679 ~ 26799608 (-)
LOC113542183 NA other downstream 618887 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1793118 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1877159 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2396523 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2488906 24016896 ~ 24040100 (-)
dst dst other upstream 436911 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 916783 27537769 ~ 27541331 (-)
G54269 NA other upstream 1812234 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3258309 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3490845 30111831 ~ 30122822 (-)

Expression


Co-expression Network