rdh12 (rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583)


Basic Information

Item Value
gene id rdh12
gene name rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32509524 ~ 32516634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939096.2
TGATGTCCTTTTTTAATCAACTGCCTCGAGTCACTTTTACGTTGTAGTGAACGTTTAATATTGATTGTAGTGCAATaacggtttaaaaaaaaaactacgcTTCCCACAAACCCCCGCGCTACAATAGCTAGTGAACGTTCAGTTTATCATTTCTtcgctaactagcaagctagcgCGTAGCTTAGTTATATTATTCGCTTTAACCTGCAACTTCATTATACAACCCACGTCTTTAGCTAGCTGTTTCGTTTATTTGCTAGTTGGAGCTCCGAATACCCGGATGAGACCGCGCTATCTGATTAGCCCAGACGACGTTTTTGACTACGCGATCACCGGGGAGGGAAAACTACAACTCCCATGATGCTCTCGGCGCTCAGCGAGTGGGAGGTGAAACAGCGCGCATTACCACAGATTCATACCTGCAAGTTGTAACCGTTTGAACAGCACGGGCgctgtatttctctttttttatttccgctatcatgatgatgatgatgatgatgatggttgtgGTGGTGGGCTCCGGGGTCGTGGCGTTAATCCTGAGACTGATGTCGCCTCACATCAGgaaatATGCAgcaggtggagtgtgtgtgtccacagcaCGTCTGGACGGGAAGACAGCGCTGATTACAGGAGCGAACACAGGAATCGGAAAAGAGACGGCGCTGGACCTGGCTGCACGGGGTGCGCGGGTGATTCTGGCCTGTCGGGATGTGAAGAAAGGTGAGGAGGCGGCGGCGGAGATCCGCTCACGTGTGGGTGGTGCACAGGTGGAGGTGCGAGAACTCGACCTGGCGGATACCTACTCAATACGAGCATTTGCACAGAGATTCCTCCGAGAGGTGAGTCACCTGCACATCTTGATCAACAACGCCGGGGTGATGATGTGTCCTTACATGAAGACTGCAGACGGCTTCGAGATGCACCTGGGCGTCAATCACCTCGGTCACTTCCTGTTGACGTACCTGCTGATCGGTGTTTTGAAGCGCAGCGCGCCGTCCCGCATCGTCGTCGTTTCGTCCCTGGCACATTATTTCGGCTGGATCCGATTCCACGACCTGCACAGTCAGGGGAGCTACAACAGCGGCCTGGCCTACTGCCAGAGCAAACTGGCTAACGTGCTCTTCACCAGGGAGCTAGCGCGCAAGCTAACAGGGCTGAACGTGACGGTGAACTCGGTGCACCCAGGGACGGTGATGTCCGATTTGGTGCGTCACTCCACGGTGATGTCTCTGCTGTTCGCGTTGTTCTCTGTATTCCTGAAAACGCCGCAGGAGGGAGCGCAGACCTCCATTTACTGCGCAGTGGCTGAGGAGCTGCACTCCATCGCGGGAAAACACTTCAGTGACTGCGCTCCAGCCTCCGTCGCTCCTCAGGGCCGCTGTGATGAAACCGCTCGGAGGCTGTGGGACGTCAGCTGCGACCTCCTCGGTATCGAATGGGACTGAGATCGCTCTTCTCTCCATCGCAGACCCGTCACTCAGACGAGACATCCATTCTGTTCTACCAATTTGCCAAACGCACTTAATACCACTTTAAGCTTATTTAAGAAACGGGACCTGGGATCCCAATGTCGTTTCAGTCGTACGTCGCTGTAGGGCAAGCAAAAATTTTGAGTTTCATTTCTTTGTTAGAAATTTGAACGTTGTTTTAATTCACGCACATTTCACCTCCTCCCCACTGCAGCTACCTGGAATCGTACTGTTTTTATACAGAAGTAAATTTGTTTTTTACTACTGTTACATTCATGACAagagaatttaaatatttaaatatatatatatataatgtacggAAACACTATTATGATTGGCCACGTTTTCCTACTTTTCTTATATGAAGGGTCACATGATGACCAGTTGTGGTCTgatcacatttaaatattttgataaagatTTAAGGCATGAAAGATTTTATATGTTTGCAGTTGACTGAAAGTCTTGCAGAAATACACAGACATTCTGGTATTGCTGTAATTGTGGGGACTGGATGTTCTCAAAAGCACATTAATGTAACAAAATCACTTGCTGTTGTGCCATATGGAGAGACCTAGCTaatttggaaaaagaaaattgcTTAGGAAGATGGGAAGTTGCACTTTTTAGGTATCCAGTCACTTAGTGCTGGAAACTTTTCCTTAGGATTTTCtcatttaggggtccaagcactttgTTCTAAAACCCTGTTGTTTTGTCAGGATTCTTCTGGTCCTCCtcgttcttcttcttcttcttcttcttcttgactGGATAGACATGAGCCCAATTCGAacaatcaaatatatatattttattttgagtcACTGGCCCATCTGCAAAGATTTTGAGCTACTTTGCATAGTAGGCAAATCCTACATCTGGTAACTTTGACCTAATCCTTGCAAATTTGTTGTCAAATCTAAGAAAAGTGTAACTATCTAACTAAGGTTggaaaaaacattgaaaaattaaataataataataataaatgatatgatTGCTACAAACCTGTTCACAATGGAACTAAACTTAAACAACTGTAACTGCTTTGATTGGTTCGAAATTTATTTTGAGGCATGGTGGTCAACAGGGGGTGCTATAAAATTCAAATAACTGTTTTACCAGAGCTATCtgataaataaagttacattttggaCCCAGAA

Function

symbol description
rdh11 Enables NADP-retinol dehydrogenase activity. Involved in cellular detoxification of aldehyde and retinoid metabolic process. Acts upstream of or within retinal metabolic process. Located in endoplasmic reticulum membrane.

NR:

description
PREDICTED: retinol dehydrogenase 12

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11152 RDH11; retinol dehydrogenase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939096.2 True 2644 mRNA 0.45 8 32509524 32516634

Neighbor

gene id symbol gene type direction distance location
si:ch211-10a23.2 NA coding downstream 26510 32478301 ~ 32483014 (-)
nusap1 nusap1 coding downstream 128487 32375964 ~ 32381037 (-)
LOC117596868 NA coding downstream 141734 32366310 ~ 32367790 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 163797 32339234 ~ 32345727 (-)
iqcc NA coding downstream 173047 32331393 ~ 32336477 (-)
arg2 arg2 coding upstream 8770 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 152872 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 243037 32759671 ~ 32764344 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding upstream 348611 32865245 ~ 32868355 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding upstream 579022 33095656 ~ 33104243 (-)
G56672 NA non-coding downstream 94064 32414909 ~ 32415460 (-)
G56668 NA non-coding downstream 109214 32399915 ~ 32400310 (-)
G56661 oip5 non-coding downstream 127693 32381127 ~ 32381831 (-)
G56670 NA non-coding downstream 199569 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 265234 32243923 ~ 32244290 (-)
G56827 NA non-coding upstream 128058 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 147247 32663881 ~ 32664343 (-)
G56860 NA non-coding upstream 197095 32713729 ~ 32713933 (-)
G57126 NA non-coding upstream 213250 32729884 ~ 32775597 (-)
G57169 NA non-coding upstream 282477 32799111 ~ 32800472 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 120380 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 155024 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 219917 32239601 ~ 32289607 (-)
G56303 NA other downstream 671289 31837182 ~ 31838235 (-)
G56272 NA other downstream 680040 31827814 ~ 31829484 (-)
slc66a3 pqlc3 other upstream 137202 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 199193 32715827 ~ 32728741 (-)
G57210 NA other upstream 502644 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 820769 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 907030 33423664 ~ 33442815 (-)

Expression


Co-expression Network