sec23ip (sec23ip,LOC107655440)


Basic Information

Item Value
gene id sec23ip
gene name sec23ip,LOC107655440
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13419948 ~ 13430260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939104.2
TGGTGATTAAAAGCTCGGCGGTCTCGGTCTGTCTGACGATTACGGAAGCGCTTACTGAACTCTGCTGGCTGAATCCGGCAGTGGGAACAAGCTACGTgtaatatttgattaaaaatggcTGAAAGGAAAAGCAATGTCCCCAGCTCCAGCGCCAACCTGCTCTTTTCCACAGCTCCAGAGTTTAATTTTAATCTGCCGTTTATTCCTGTCAGTCAAGCCACTGACCCAGCAGTTTTATCCGGAGATGATGTGAGCGAAGTTGGTGAAGAAGACAGCTTTCTTGGTCAGACCTCATCAACTGCACTTGAGCCATCAACGTTCAGCTATTTTTCCAGCCTCGGGGGCAGCGGTGATCCGTTTGCTTCAATAGGGCCCAAGTCGTACCTGCCTCCTGCTTCTACTGTTGTCCCAACAGCTGCTTCTTCACTAGTGTCCAGTGCTACAAGTCTGCCACCAAACCCCCCGATTTCTCATGTAAACTCTGCGCAGCAGCAGTATGGCAATGCAGTTTACCAGAACcccatcagcacacacactccttcacctAATGTAACGGCTACTCCGCCTCCCCAGGCCAGCCAGCAGCCCTTTAATCCGTATCGTCACACAGCCACAAGTAGTAAAGCTAGCCCTTATATCATGGCTCCTGAGCTACAGCAGCAACCTCCTCATCAGACACCACAACATCTCAATCCATACTCTCAGACCCCACCACCTCCCACGTTCCCGTCCGCACCCCCACCATTCACCCAGCCTCCCCCTGCACAGGTTCCTCCCCCACCTTCAGGACCCAACATGGCAGGACCTGTGGTTCCAGCCAACCCCATGATGCAATACTCGTATAACGTCTATGAGCCTGTTCAGCCTCACTGGTTCTACTGCAAACAAGTGGAGTCCAGGAAAGTTTGGCTTCCCTTCAGTATCCTGGATTCCATACGACTGGAGGAGACTTTTAATTCGGTCCAGCCAGACCCGGAGAATGTGATAGTGAGTACAGATGGTGCACGCTATGATGTGCAGCTTTATGACCGCATTCGCACTGCTGTGTACTGGGAGGAGGAGCCAACTGAGGTGCGCCGCTGTACCTGGTTCTACAAAGGGGACACAGACAGCCGCTTTATCCCCTATTCCGAGGAGTTCAGTGACAAACTAGAGGCAGAATATAAGAAAGCCGTTTGCACTAATCAGTGGCACCGCCGGCTGGAATTTCCTTCAGGGGAAACAATTGTTATGCACAATCCAAAGGTCATAGTGCAGTTTCAGCCAACAGCCACGCCTGATGAATGGGGCACTACACAGGATGGTCAGACTCGGCCCAGAGTGGTGAAGAGGGGAGTGGATGATGACCATGATGAAGTCCCAGATGGTGAAATGCCACAAGTGGACCATCTGGTATTTATGGTGCATGGCATTGGCCCTGTCTGTGATCTGCGGTTCAGGAGCATGGTGGAGTGTGTGGATGACTTCCGCAGTGTTTCCCTGAAGCTGCTGCAGAGTCATTTTAAGAAGGCTCTAGATGACCGTGTTATAAGTCGTGTGGAGTTTCTGCCTGTGCACTGGCACACAGCCCTGCATGGAGATGCCACAGGAGTGGACAGGCGGATAAAGAAGATCACTTTGCCCAGCACTGTGCGCCTGCGACACTTTACCAATGAAACCCTCTTAGATGTACTATTCTACAACAGCCCAACCTATTGCCAGACCATCATGGACACTGTAGCTTTTGAGATTAACCGACTTTATGCACTGTTCATGCAGAGAAACCCAGAATTCAAAGGGGGTGTGTCAGTAGCTGGACACAGTCTAGGCTCTTTGATACTTTTCGACCTACTGTCTAATCAGAAGAACCCATCTTCTGCCTCAACTCCAAATGGGAACGCCCAGCCTGAAGTTAAACAGGTGAGTCCTCCTGTCTCCCAGGCCACTGAGGTCTTTAGCCCGGCTGCAGCAGAGGAAgcaaaggaggaggaagaggagactGCTGATCTGTCATCTGTTCTGGAGCAGCTTGGTCTGTCTGAGTACCTCAGCACCTTCGAACAGGAGAAGATTGATGTTGAGTCACTGcttaTGTGCACAGTGGATGATTTGAAAGAAATGGGTATTCCTTTGGGGCCACGCAAGAAGCTTGCCAAGTTTGTTAAAGAGAAGGCAGCAAAACAGGCTGTGCAACAGGCTGCAGGAGAGAAAGTTATAGCTAAAGAAGACATTAAAGAAGTTTCAACCCCTCAACACACTGAATCAGTCACAACTGTTGCCCGTTCCAAAGTCCCAGTGGGCAGGCTTACGTCCTCCATGCATGTGGATTACAACTGCTTCGAAATTGGCACTGGGCAGGTGTCTGTGGTGTATCATGCTCTGGACTTCAACCCTGTCAATTTCTTTGCACTTGGCTCTCCAATTGGCATGTTTCTGACGGTGCGAGGGGTGGAGAAACTTGAGGAGACCTACCAGCTACCCACCTGCAAAGgcttctttaacatttatcatCCATTGGATCCAGTGGCATACAGACTTGAGCCCATGATTTTACCAGATATAGAACTGGAACCTGTTTTGATTCCTCATCATAAAGGAAGGAAAAGGCTTCATCTTGAATTAAAGGAGAGTCTGTCCAGGATGGGTTCTGACTTGAAGCAGGGATTCATCAGTTCTTTAAAGACTGCTTGGCAGACCCTGCATGATTTTGCTCGTGCTCATACTGCCTCTACAAAGCTGCATGAACAGCTGGCCATAGTGGCCAGTCAAataaaagaggaagaggaaatgcAGAACAAAGAAGcTGAGAATAAGCTAGTGCCAGAGACTCCTGAGCCTGCAAAGGAGGAAGAGACTCGGGTGAAGGTGGGCATGCTGAATGGAGGACGTCGCATTGATTATGTCCTGCAAGAGAAGCCCATTGAGAGCTTTAATGAATACCTCTTTGCTCTCCAGAGTCACCTGTGTTACTGGGAATCTGAAGACACTGCTTTGTTCTTCCTTAAAGAGGTTTATAAGACCATGGACATATGGCCAGAGCAAACAGCGCACTGATGTGATCATtgaaaaataaagcacatgaaaagTCCATTTAAACGGTTTTGAATTTTCCAGGAGGGCCTGCCTTGGCAGTTGaatcactttcttttctttctttctttttttttttttttttttttaatttcctattCTTTGTTTTCTTGTATAAATAAGAATACATAAGTATTATTCTATATATCTTAAATTAAGAAACTGAGAATTATAGCGTGGTGTTAAGTTCCACCATACATCAGCATTTTTATAGAGCTGTGAAAGACTGATTATGGTTCATCAGACTTCATGAATCATGGTAGTAACAGAAACTTTACTGCATTACGTAAGAAAGCAAGTCTGTTCTATGTAACCAAGACCCATAATCCACACATTAAACTGATTTTGTCCAA

Function

symbol description
sec23ip Predicted to enable phospholipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein).

NR:

description
SEC23-interacting protein-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939104.2 True 3422 mRNA 0.47 19 13419948 13430260

Neighbor

gene id symbol gene type direction distance location
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 15273 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 36605 13376724 ~ 13383343 (+)
pkd2l1 LOC108263119 coding upstream 53881 13359076 ~ 13366067 (+)
atoh7 atoh7 coding upstream 63516 13353569 ~ 13356432 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding upstream 73842 13339258 ~ 13346106 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 158056 13588316 ~ 13633478 (+)
fancl fancl,LOC107585345 coding downstream 605378 14035638 ~ 14056463 (+)
soul2 NA coding downstream 763574 14193834 ~ 14197074 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 859122 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 866074 14296334 ~ 14328299 (+)
G45640 NA non-coding upstream 43949 13375799 ~ 13375999 (+)
G45594 NA non-coding upstream 106727 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 107868 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 324067 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 367419 13052240 ~ 13052529 (+)
G45712 NA non-coding downstream 91579 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 92646 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 213860 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 459019 13889279 ~ 13889849 (+)
G45875 NA non-coding downstream 463882 13894142 ~ 13896535 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 385598 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 414625 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 482646 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 776644 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 783542 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 67788 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 783109 14213369 ~ 14286542 (+)
cgas NA other downstream 931107 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1542308 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2363146 15793406 ~ 15797204 (+)

Expression


Co-expression Network