cnrip1b



Basic Information


Item Value
gene id cnrip1b
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27382304 ~ 27385511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026939134.1
atGCGAacagaagagtatggagaagggaaggaattGCTCATGAGCTACATACATGCATGCTACATCATCTTATGCCTTAGCTGTGAGTCCATGAGCGTTGGTGGGGTTACATTTCCTCTGAAACAGAAATCCAAAGACCCTCAGGCGGTAGTGTATTCGGTGATGTATGACACTGAAGGGGTGGCGCACACAAACGTAGAGAATGGCACCCTGTCGAAGTGTGCATACATCCATTTGTTTCCTCTCTACAGCTTCCACAGCATCGAGTACGAGTGCAAACCTAATGAGACTCACAGCCTGATGTGGATCAGTAAGGAAACGTTTTGTGAGAAATTACTGACAGCTTTATGA

Function


NR:

description
CB1 cannabinoid receptor-interacting protein 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026939134.1 True 351 mRNA 0.46 4 27382304 27385511

Neighbor


gene id symbol gene type direction distance location
ppp3r1a PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding downstream 1673 27366318 ~ 27380631 (-)
wdr92 wdr92 coding downstream 21638 27355002 ~ 27360666 (-)
perp perp coding downstream 41187 27337048 ~ 27341117 (-)
ifngr1l NA coding downstream 135940 27229014 ~ 27246364 (-)
rab23 rab23 coding downstream 159086 27213100 ~ 27223218 (-)
prokr1b prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161 coding upstream 26519 27412030 ~ 27421154 (-)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 51634 27437145 ~ 27473721 (-)
LOC113542117 otor coding upstream 116151 27501662 ~ 27504308 (-)
polh polh coding upstream 133358 27518869 ~ 27525942 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 162754 27548265 ~ 27560020 (-)
G53862 NA non-coding downstream 14244 27367361 ~ 27368060 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 62682 27318088 ~ 27319622 (-)
LOC117596885 NA non-coding downstream 67953 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 128352 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 180406 27197359 ~ 27201898 (-)
G53729 NA non-coding upstream 145065 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 592933 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 714862 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 721204 28106715 ~ 28175966 (-)
G54219 NA non-coding upstream 760827 28146338 ~ 28146866 (-)
dst dst other downstream 186349 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1472185 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2646416 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2730457 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3249821 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 152258 27537769 ~ 27541331 (-)
G54269 NA other upstream 1047709 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2493784 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2726320 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2767397 30152908 ~ 30161224 (-)

Expression



Co-expression Network