mrps6 (mrps6)


Basic Information

Item Value
gene id mrps6
gene name mrps6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28449126 ~ 28452109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939138.2
gtcTGTTCCACACTCCGGAGCAGAAGGTGGCGGTAATGCACCTGTTACGCTGGTTGCCAGCCGCCGTTAAaaaccaagaagaagaagaagaagaagaagaagaactatAATGGCGGCGTCCTATATCTTGTAGTGAAGTCACGTTTTCTCCTTCCAGAAGAGTTTTTTAGTCTTGAACGTGAGCGTTACCCCTCAGGCAGGCTGAACTCGGATAATAATGCCTCGTTACGAGCTGGCTCTGGTGCTGAAGGCCATGCAGAGGCCGGAGACCGCGGCTGTGCTCAGGCGCACGGTGGAGACCTTGATGGAGCGCGGCGCCGTGGTCAGAAATCTGGAGAACCTCGGCGAGAGAAGGCTGCCGTACAAGATCAGCAAACACAACCAGCGGCACACACACGGAGCCTACTTCCTCATCGACTTTCACTCCGCACCGTCCATTCTGACTGCTTTACTCAATCACCTGGAGAGAGATGTGGACGTAGTGCGGCAGACTGTgttaaagaaagacacagagcCTCCTAAAGCCCCGTGCTGTGGTTCCTCACCTGCTCAGACAAACAAGATGACTTCTGCATAAACGTCTATAAGGAAGAAGATAcactgctgggttttgctgaaTTTCAACTACATTCATGTGAAAGTTTATAATGagaaaggaataaataaaaaaaaaaaaaaaagttaatctttttaaaatatgtttgtgtttgttaattCATGTCTAATAAGTCAACACTTTTAAACCCATTACAGCACAATGTGTGCATGCCCCTGACAAAGGAAGAGAATATTctacaacataaaatgtaaatcattaaaggaataaaacaaaagcctTTAGGCCCAAATATATATGCAGTTATTTAACTATACTTGAATTGTAATATATACTCGACTAGGATTGAATGTTTACTTTCACAGTAATGCCATCAACTGTAATCACAGCTCTGATTAACTATTTTTgatcatatgtgtgtgttagaacagATAACTCTTTAATGTGTTCAAATGAAAGTGTTTGGCAAGAGTTAAGTGTTAGGATTCTTTTAAATGCTGAAAGTGAATCTTTTCAAGGAAAGTAAAAGCCTTGTTCTCTA

Function

symbol description
mrps6 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS6 (mitochondrial ribosomal protein S6).

NR:

description
28S ribosomal protein S6, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939138.2 True 1097 mRNA 0.42 2 28449126 28452109

Neighbor

gene id symbol gene type direction distance location
micu1 micu1,LOC107754762,LOC107702683,LOC107660220,LOC107717828 coding upstream 13714 28396192 ~ 28435412 (+)
pla2g12b pla2g12b,LOC106526913,LOC103366536 coding upstream 127306 28318767 ~ 28321820 (+)
LOC113542058 NA coding upstream 131433 28315896 ~ 28317693 (+)
tbxtb t,LOC107717823,LOC107660241 coding upstream 253563 28190899 ~ 28195563 (+)
si:ch211-130h14.4 LOC108262915 coding upstream 258601 28174668 ~ 28190525 (+)
psap psap coding downstream 1664 28453773 ~ 28464698 (+)
LOC113542012 LOC108263175,LOC108263176 coding downstream 13550 28465659 ~ 28487384 (+)
mad2l1bp NA coding downstream 56946 28509055 ~ 28516011 (+)
macrod2 macrod2 coding downstream 70237 28522346 ~ 29072960 (+)
glo1 glo1,LOC103022823,LOC108426138,LOC107679178,LOC107667967,LOC107734292 coding downstream 632537 29084646 ~ 29093239 (+)
G53693 NA non-coding upstream 262 28448331 ~ 28448864 (+)
G53629 NA non-coding upstream 11289 28436980 ~ 28437837 (+)
G53688 NA non-coding upstream 70863 28374776 ~ 28378263 (+)
G53682 NA non-coding upstream 122943 28325642 ~ 28326183 (+)
G53678 NA non-coding upstream 158405 28290393 ~ 28290721 (+)
G53699 NA non-coding downstream 15664 28467773 ~ 28467983 (+)
G53702 NA non-coding downstream 31590 28483699 ~ 28483898 (+)
G54724 NA non-coding downstream 665957 29118066 ~ 29143380 (+)
G54725 NA non-coding downstream 672384 29124493 ~ 29184455 (+)
LOC113542173 NA non-coding downstream 999787 29451896 ~ 29474301 (+)
G53692 NA other upstream 815 28447377 ~ 28448311 (+)
pde10a pde10a other upstream 147303 28201035 ~ 28301823 (+)
znf451 znf451 other upstream 1241881 27197909 ~ 27207245 (+)
G53328 NA other upstream 1456415 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2584780 25850600 ~ 25864346 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 13979 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1260149 29712258 ~ 29748505 (+)
G55091 NA other downstream 1485439 29937548 ~ 29941181 (+)
mgst3b LOC108263214,LOC103043280,LOC108426107,LOC106579764 other downstream 1902194 30354303 ~ 30358454 (+)
LOC113542119 NA other downstream 2027817 30479926 ~ 30486287 (+)

Expression


Co-expression Network