rhd (LOC108263215)


Basic Information

Item Value
gene id rhd
gene name LOC108263215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30368672 ~ 30377049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939174.2
ATTACTAATAGCAGTAACTATTGCATGGCACAGCTTTCAAGTCCCTGACGTTAAAGACACTTGTACATGAGGTTCCCCGCCCTGCTTAGTACAGCTTGAAGAGGATCTGAGCAAAGACATGCAGGCAATAACAGAGCTGTGAATGCTCTCTCATGGCTCCAAAATACGCTCCCAGTCTTCGAGCCCGGCTTCCACCTGTGGCTCTTCTTCTGCAAATCGCCTTTATTGTCATATTCACCTTTTTTGTGGAAATAGGGGACTATGAGAAGAAAAAGGCAGAagaattcattttttcatatgCAAAGTTCCAGGATATCCATGTGATGGTGTTTCTGGGTTTTGGCTTCTTGGCGACGTTCCTGACGCGCTATGGTTTCAGCAGCTCGGGCTTCAGCATGCTGGTTGCTGCCCTGGCCGTGCAGTGGGCCACCATCCTAAACGGCTTCCTGCTGTTTCGCAGTTTCAACTGGAAGATCCGAATCCagttaaaaagTCTGGTAGACGCTGAGCTGTGTGCAGCTTCGACTCTCGTGGCTATGGGTGCCATCTATGGAAAAACCAACCCGGTCCAACTTCTGGTGTTCGCTCTGATAGAGGTTACGGGGTTTGTGCTAAACCAGTGGCTCATACAAACAATGCTCCAGACACGGACACATTGGCTGTACAGCATCGTACTCATCAACATCTTCGGAGCTCTCTTTGGTGTGATGACATCACGCTTTCTTTTCCATAGCGAGATGCAGCTGAAGCACGAGAAAGAGAAGGTCAGCAGGATGACGGGCGTCTTTGCCATGTTTGGGACTTTGTTCCTGTGGATGTTCTGGCCCAGTTTTAACTCAGTGGTGGAGCAGAACACTGATGTGATGTGTAGCACGTATCTGTCTCTGGCTGTCAGCGCCGTCACAGCAACGGCCGTCTCCGTGCTGTCCAGCTCTAAAGGCAAGATCAACTTGGTGCACGTTCAGAGCTCCATGTTGGCCGGCGGCATCACTGTCGGAGCCGTCGTGACCTCGGCTCCTGCTCCCTGGATCGCCATGATGATCGGCTTGTGCGCTACTCTTTTGTCAACTCTAGGACTTCGATATTTGAAGGACCATATGCTATTTGCTTTTGATTGCCACGATACCGTCGGTGTCCTGAGTGTTCATGCAGTGCCGGGAATTCTGGGATGGTCTGCTCAACTCATCTTGCGACTGGCGACTTTCAGCAACAGCACAATtgCTGTCCGGTTTGCGGTGCATCACATCTGTATTTTGCTCATCACAGTCTGTGTGAGTCTGGTGATGGGTGTTATCACAGGACTGCTTTTGAAATGGAGCTTCTGGAAACCTCCGCAGGAGAATAAGTACTATGATGACCAGGCCTTCTGGGAGTTCCCACATCTGCTGGTGCACAAGTGAGACCAGTGTCGATGACCCTAAGGAAACATTGTAAAAATATAAGGACTTGTGTATGCGTTTTCTGTTTATGATTtatcttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcactgaaataaacattcaaCCATGCTCAGTA

Function

NR:

description
Rh30-like3

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939174.2 True 1549 mRNA 0.49 10 30368672 30377049

Neighbor

gene id symbol gene type direction distance location
eif2ak2 NA coding downstream 16378 30345121 ~ 30352294 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 193552 30163347 ~ 30175120 (-)
LOC113542130 NA coding downstream 219748 30140946 ~ 30148924 (-)
eif3s6ip eif3l,eif3s6ip,LOC106576896,LOC107676390,LOC107679167 coding downstream 579888 29782263 ~ 29788784 (-)
dact2 dact2 coding downstream 589603 29773385 ~ 29779069 (-)
LOC113542134 LOC108263607 coding upstream 70209 30447258 ~ 30458120 (-)
LOC113542166 rab11fip2 coding upstream 246200 30623249 ~ 30642158 (-)
fam204a fam204a coding upstream 327965 30705014 ~ 30719700 (-)
LOC113541964 NA coding upstream 369183 30746232 ~ 30753678 (-)
trnag-gcc_2 NA coding upstream 378357 30755406 ~ 30755476 (-)
G55270 NA non-coding downstream 28822 30339477 ~ 30339850 (-)
G55220 NA non-coding downstream 205702 30162751 ~ 30162970 (-)
LOC113542120 NA non-coding downstream 491912 29873048 ~ 29876760 (-)
G54977 NA non-coding downstream 659636 29705743 ~ 29709036 (-)
G54976 NA non-coding downstream 685147 29680123 ~ 29683525 (-)
LOC113541972 NA non-coding upstream 20363 30397412 ~ 30401396 (-)
G55400 eif3a non-coding upstream 95555 30472604 ~ 30477610 (-)
LOC113542125 NA non-coding upstream 127287 30504336 ~ 30618187 (-)
G55449 NA non-coding upstream 242128 30619177 ~ 30623205 (-)
trnag-gcc_3 NA non-coding upstream 474888 30851937 ~ 30852007 (-)
rsrp1 rsrp1 other downstream 24134 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 115216 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 207448 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 245850 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 257511 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 1168852 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 1186506 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 1301334 31678383 ~ 31830932 (-)
G56272 NA other upstream 1450765 31827814 ~ 31829484 (-)
G56303 NA other upstream 1460133 31837182 ~ 31838235 (-)

Expression


Co-expression Network