si:ch211-10a23.2


Basic Information

Item Value
gene id si:ch211-10a23.2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32478301 ~ 32483014 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939177.2
GCGGGTGGGCCGGTGAGACGGTATCCGAGGCGCGAGGCGGCCTAGGCGGGGTTTAAAcgctcataataataataataataataataataaaaattactgTAATAACCGAGAGGTTTGGACAGAAAGGGAATATGGCGGACACAACAACACTGCGGAGTGAGGAGGATTACATTGGACAGATTAAAGGAGGTCTGCGTCCTGCTATGAGAATCGTAGTGATGGGCATCATTcacaaacagccaaaaaaTATGATGGTGACGTTGTCCTGCCCACCACGAGGAGAAGGTGACGAGGAGCAGGAGGGTGACGTGGGGTTGCAGCTGACGGTCAAGTTCACGGAAAAGGCCGTGATCCGCAATTCCCGAGTCAATGGGAAGTGGGGAACATCGGAAAACATAATCTCTTTCTTCCCTTTTGCTGCTGGAGAGTCTTTTAAAatggaGATCGTGTGTGAGCACCAGCAGTTCCGGATCCTGGTGGATGGTCAGCCGTTGTGTGGATTCACACACAGAGTGACCCCGCTGGCGTCCCTCACTTCCCTACGCGTGGGTGGAGACCTGCAGCTCACCAAAGTCGCATGAAAACACAAGAGTTGCCATccaaaaaaacacccacacagGCACTCATACAATAATTGCAAACCATTGATGCACCAAGTTCTTTTAAGTAAATGTCCCTCCTTTAGTGACCTGTGACTCACTGACCACTGAGCCAGGAAAAATACACACGGATTTTAATGACGAATGAAAAATATTCCAAAGCTACAGTCAAATGTGATTTATATTCCTGTGTAACACTCAGACCTCATGCACACACGTATGGATATTTCTGGAAGCAcatttttctcctctgtttaaaaaaaaaggccacaaTTTTTTCAGGTATCTCTCTCCAATCCACACCGGAATGTAAAGGGCTTACGTGAGCATGCCAGgccagtaggtggcagtaatgCGTTTTCTACCACAGCACTATCGAATTCTCGAATATGTGTAATcgtaatcattgatgtggtgaaaatttctgtaaggagacatttatttaacatttatggaaggagtctccagtatcagcaagGGAACAGTTGTTTATAGCAGATATAGCGTAAGTGaaaactggaactaacttgtttcacagatgttccacaactataatgtgtaataaaaagaatgacacatcatttgttaataaataaaacagtaatcaTTGGgatattgctgtggtgtaacgAGCGTCGTGCCGGGCCGCATTACACCATCGTGTTGTTACgtattttcctctaactgcaCACAGCGTACTGTACTATCCCTTACATAATGTCATGCGTACTGTATATTGTGCAATATATAGGCTAAAAACAAAGGACTGACGTGTTAGAAAACAAACAGTGATGCAATAGAGTGAGAATAAAGTAAGGCTAGTAAAGAGTCTTGGCACATACCcaacacaaaacagcaaaacagcaaCCATTACGTGCAAGTTCACATCATGATATCACTATTAACCCTCTACAGCATTTCCTGAAAGTTTTAACCCTGAGCTAAAATGCTGCTCTTGTACAGACGGAGGCCCAAGCGCAGAGAATGTGTTGTTTTCAGAAATATCCATGTGGACATTGTTTCAGTGATGCGAACCAGGAGCTGAATATTTGTGATTCATTATCATTAACCCTGACTACATTCGGCTAAATGAGCAcgcttttaattaaataatacatctttttttaacatatttacaaACTGCTACTTCAAAGGAGGCAAAGAAAAATCTGTGACATGTACTACTACCTGCTACAGCCTTGACCTTGACCTTTGGCTCTTTCGTATTCCAACAGAAGTGCCTTgacaagtgtgtgagtgtgtgtggctaCGCTGTCTTATAGAGGCAGTAAAAATACAACCTGAATGACTTCAGAAAGCTCTCTGAGAGATTTCTGATGCAATACCTTACATGGTGCTATAGAAcagggtagtgtgtgtgtgtctcacacactGGCCTACAATACacacttttaacacacactcagaagtTCATGTATGCTGCATTAGAGTTCGCCTGatcatttctgtgtgtttgcattaaTATGACGAATGAACAGCCCAAGAAATCGACATGTCTGAtcaagaagcaaaaaaaaatttaaaaaatcatgtctGTCAAGATGCCTTTGAATTAGATTCAGtatgaaaacaataaaagtcTTTTTGCACATGG

Function

NR:

description
galectin-related protein B-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939177.2 True 2214 mRNA 0.42 4 32478301 32483014

Neighbor

gene id symbol gene type direction distance location
nusap1 nusap1 coding downstream 97264 32375964 ~ 32381037 (-)
LOC117596868 NA coding downstream 110511 32366310 ~ 32367790 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 132574 32339234 ~ 32345727 (-)
iqcc NA coding downstream 141824 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 147085 32315458 ~ 32331216 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 26510 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 42390 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 186492 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 276657 32759671 ~ 32764344 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding upstream 382231 32865245 ~ 32868355 (-)
G56672 NA non-coding downstream 62841 32414909 ~ 32415460 (-)
G56668 NA non-coding downstream 77991 32399915 ~ 32400310 (-)
G56661 oip5 non-coding downstream 96470 32381127 ~ 32381831 (-)
G56670 NA non-coding downstream 168346 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 234011 32243923 ~ 32244290 (-)
G56827 NA non-coding upstream 161678 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 180867 32663881 ~ 32664343 (-)
G56860 NA non-coding upstream 230715 32713729 ~ 32713933 (-)
G57126 NA non-coding upstream 246870 32729884 ~ 32775597 (-)
G57169 NA non-coding upstream 316097 32799111 ~ 32800472 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 89157 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 123801 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 188694 32239601 ~ 32289607 (-)
G56303 NA other downstream 640066 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 647369 31678383 ~ 31830932 (-)
slc66a3 pqlc3 other upstream 170822 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 232813 32715827 ~ 32728741 (-)
G57210 NA other upstream 536264 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 854389 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 940650 33423664 ~ 33442815 (-)

Expression


Co-expression Network