si:ch73-52p7.1 (LOC108262847)


Basic Information

Item Value
gene id si:ch73-52p7.1
gene name LOC108262847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27244951 ~ 27257879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939201.2
CGTCATCCGACGATTTCCAGCGACTTTGGGAGCATGTCTCAGTTCCTTTCTCCTGAGAAGAGCAGGGAGCACTGGTCTCCTCATGTCTGAGTAAAGACCGACATTACAGTTTATGTTTTCCTGCTTGACTTGGCCAGTCATGCATAGCAAGATGCTGAGGACACCGTCTGTGGCTTTGGCAAGCACTGCAGATTCACTGAGTCCAGTGAAAACTTCGAAACTTCCCACATTCCTCGTCAGTCCCTTAGATCCTCAGATTGGGAAAAGGACTTGTGCTGGACATTTCTGCATCAATGAGGCATAGCAGAAGACCCTACTCTGGTGCTTGTCTCAGGCCATGCCAGATGTCAATGGCAGCGCTCTCACTGTCAACATCACTACAGACGTTTTTCCTATAATTTTCAGTAGGACAAAGCCATTTGGAAAGGTTTCATATGACCTAACAGAAAGACATAACTCTCAGTAGAACATAGCAGCAAGGCTGCAAAAACCTTGGTGACATATACCACACGTTTCAAGCTTTGCAATAATGTCAGAGATGAATCTTCTGGGTCATATGGGCTGTGTTGCTCTGTACTGTGTCCTGTCTCTGGTCATGCCGGCGATCCTGAGTGCCGAGTTCACTCTGGCCAGTGTGAGCGAGCACCATATCATCATCTGTACGTGCATGCAGGACCTGGTAGCCTGCAGCATTATCAACtccagtgagtgtgtttgtCATAACCACCCATTCTCCATGCTGGAGCACGATGACAGCCCCAGCACAGTGACTTACAAGCGTCTGACAGTGTGGTACACCTCACCACTCAATGTTGCACGTCTGCTGAACAACTCAGAGGTCCGCTACCTGGCACTGGCCAAGTGCAACTCAGCAAGAGGTACTTCACTATCTGTTCACTACTTCACAGTGAGGAGGCTGGAGAGGCTGTACATCTCATACCCATTCTGGATGCCTGGGCAGAACCATGACATTGTGCTGGGTAGAGATGTGGGCATGCCTTACCACGAGGAGCCAAGGATGGCTGTCATTCACACGGATGTGTTGGTGGGGAAGGCTGAGTTGAAAGCATACACAGTGAAAACCATGGTGGACAGCAATGGCATGACTCCATTCCCTGAAATGTTCATGCCTATGGATGACCTTCCAGATATGTCCAGTATATTCGTATCTTTCTTGTACTAAGTGGCATTTGGATGCAAAGTTTATTAGAGGTGTTTATCAAAAGTTTAAATCTAGGACTTTTAAGGATTCTTTGGTTTGTTTCgtctgggggaacccttaaagacaTTAACATTTGTGGTTAAACTGCAAGAAATGGGGTCAAGTTAACTACTCTAGTATGAAAGAAGTAAGAAATAGGTCTAAGTGAACTAAGAAATATTTGTAATTCATTACTTTATTGAATTTATTGGGAAATAATCTATACTGGAAAGGACCTACCTGGATCACACGTTGGCTCTACAataggcacagactcaccgaaagtAGACAGTTGACgattgaaaaaaatgttgcttGATCTGCTGAATTGCTATTTTTGCTGTGACATGCAgttggtagggtcagaatttggagTCACCAACATGAATCCATTGACCTAATCTGTCTTGTGTCAatagttcaggctggtggtggaggtggtgtaatagTGTAGGGACACACTGGCACACATTGGCTCTTTAATATCAATCCagcattgtttgaatgccacagcctttTTGAGTATTGTTACTGACCACGTGCCTCCCTTTATGGCTACAGTTCACCCATCTTATAATAGCTACTTCCATGATTATGCATGATGTCATGaagcacaagtcatctcaaactggttccatgaataTGACAATGAgctcagtgtacttcagtggccttcccagtcattAGATCCgatagagcacctttgggatatGGCAGAACTGGAGATTTGCAGAACAAATGTACAGCTGAAAAATGCACCAATCCTGTGAGGAAATCATGTCAGCATGGACCAAAATCTCCAAGGAACGTTTCCAACACCGTGtgacatccatgccatgaagaattgaagCTGTTCTCAGAGCAAACGGGGTCCTACTcagtattagtatggtgttcctaataaagtgacagtagATGCTTACTGTCTAATATCAAGTGTAAGACAAATCTAGGCTCATGATACCTTACAGTCTTACAGTAACTGCTTCACCAAACAAGTGTATCTGCCTTTAATAAAAAACTCATTTAGAGTTCCACTCAAATATTAGAGTAGATAATGAACAGGTccttaaacacaaacattcacatatCTTATGGAacacttgtttaattttttattgcCAAATGATCTGCTTATATCGTATGTCTATTCTGCTGATATGCATTATTGCCACCAGTCACCATTACTGTCATTGTACAAATAAGTACTCGGATCATACAGTTGTAATGTGAAATCATAACACTAGCACATAGTTAACctgaaacattattattaaagttcaCAGATGCTCAAACCACAGACAGTAAAACAGTTGATACATGCAGTAACCTGAAATCTTTGCAAAATATCTACAGTATTAGGCAAAAGAAATGAAGTTGCTTgcaaaaataatgacaataatgacAAGTTTAAGCCGTTTAAAATAAAGTCCCAGGTCCCAGGTTAGTCCCATACAGCCCTGATGATGTTTACATACGAAACGTGGTGTATTGCTTAATATACAACTATATAACTAATATTTAACATATGTCTCTGtaacattttctcttttctgatgCACAACTATGGAAGATGTtaacatttattacaaaatgtatGTTTCACAGTATGAAGTAAGTTATTTCAATGGACTTAAAAGTATTCTGCAAAATTCCCCATGTTCAGCCAGATTGAAACACTGCACAGCTGTGTAACAGGGTCAGTCCACAAGGGGGAAGCATTGTTTCATACAGTATACATTCCTTCTCACTTAACCTGAATTTGTATAAAAACTGTAGggtgaaataaaaaagtagaaaatcTGCTCTTAATAATATAGGGAATAATCTAAAGACAATCATTATTACAGTCTTTCACTCCATTGTATTCTATTTGTTCTAGTTaaaattttattccatttttgtTCCTTGTGGCAAAATTGATATTcatgtttacaaagaaaaattttGCTTTTAGTGTCTTTCTGGTTTTACTCTCTCATAGACTGCTGGATTTGTAAGAATTACTCAGTCCAGTATAATTCAGAAAACTCAAAACTGGTCTATTTGACAACACAGATTAGGTTAAATCTAGGACCTGTAAGGTTTCTTTGgattagatttattagattTCAAGCAGAACCCTTTAAGGAGGATATAAAAAATCTTAATTATCCATATaacccttaaaggttttatatatatatatatatatatatatctcaaatATGTGTTCTGTAGTTCATCCACCgaagattaaaaagaaagaaaagtaggCACCATCTTCTGTTCGAAACAGGTGTACTGTCTCACTGTCAAGTACACAGGCTGGTTTCAGTAAGCCCTGAACAGGGGTCAAAGTGCCAGAGCATCTGATCAAATTACTTTCAGCAAGGCAGATGTTGGCATTTACAATTAATAATGTACTCTGGGAATTGGATGGAACCAGTTCAAAACACACATATTGCAATTAACAGAGCCCAATTAGCAACTCTAAACttaggggatttttttttgtttgttttgtgttttttttaacaattgcACTTGAGTAGAGGAGGCCAAAGGTATTAATGTGGGCTGTATACAATAAAACTATGGGCAGGCTGAGACGGGCATGCACACACGctttcatacatacacacgtgTGGTTGTAAGtgaaaatgaatgcattattcatAATGAACAGTTCATGTGTTCTTAACAATTAGAAATAAAGATATGAATAAGAAGCA

Function

NR:

description
uncharacterized protein LOC103035101 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939201.2 True 3915 mRNA 0.40 3 27244951 27257879

Neighbor

gene id symbol gene type direction distance location
bag2 bag2 coding upstream 31829 27207328 ~ 27213122 (+)
gfral gfral coding upstream 311201 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 321700 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 357872 26873228 ~ 26887079 (+)
mlip mlip coding upstream 379814 26830224 ~ 26865137 (+)
olig3 olig3 coding downstream 16637 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 56654 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 85042 27342921 ~ 27347922 (+)
pno1 pno1,LOC107719218 coding downstream 102963 27360842 ~ 27365471 (+)
plek plek,LOC107720939,LOC107558215,LOC107727890,LOC107561985 coding downstream 128378 27386257 ~ 27393196 (+)
G53340 NA non-coding upstream 793 27242955 ~ 27244158 (+)
G53312 dst non-coding upstream 123012 27111544 ~ 27121939 (+)
LOC117596898 NA non-coding upstream 176771 27058878 ~ 27068180 (+)
LOC113542178 NA non-coding upstream 187953 27055764 ~ 27056998 (+)
G53316 NA non-coding upstream 208143 27033849 ~ 27036808 (+)
LOC117596902 NA non-coding downstream 3252 27261131 ~ 27273177 (+)
G53402 NA non-coding downstream 79168 27337047 ~ 27341096 (+)
LOC113541894 wdr92 non-coding downstream 91031 27348910 ~ 27355673 (+)
LOC113542161 NA non-coding downstream 269986 27527865 ~ 27530466 (+)
G53331 NA non-coding downstream 302293 27560172 ~ 27562940 (+)
znf451 znf451 other upstream 37706 27197909 ~ 27207245 (+)
G53328 NA other upstream 252240 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1380605 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1398048 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1650015 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 943156 28201035 ~ 28301823 (+)
G53692 NA other downstream 1189498 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1208209 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2454379 29712258 ~ 29748505 (+)
G55091 NA other downstream 2679669 29937548 ~ 29941181 (+)

Expression


Co-expression Network