LOC113541990


Basic Information

Item Value
gene id LOC113541990
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31545901 ~ 31548633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939213.2
GTCTGAATGCTTTCTCAGATCTTCTCTGATCATCTACACAAGTTAAGACATGATGATCCTGAACGCTGTGTCTGTCACTGGACTCCTGCTCACCCTGAGTGGTTTGGCGGCGTATAATTTGAGTCAGGAGCAGTCCAAATCGGTGAAACAGGGTGACACGGTGTCGATACTCTGCACTGCAGAAAATGATGCTCATTACATTTCATGGTACCAACAAAAAGCTGGTGGTCTTCCTCAGTTTCTGCTCCGCAATGATGTAAGAGCCAGCGGATTACCTGACAGGTTCACTTTCACTGACTCGGGCAATCAGGATTATCTGAACATCAACGGAGTGAGAGCTGAAGATGAAGCGGTTTATTACTGTGCTTGTCTTAACTGTGGAGGAGCTACACAGtTGATATCTGATCATGCGTCGTCTCCTCCGTCGCTGCTCCTGCTCACTCCCGCGGGTTCTCCGCTCTCTGAGGGTGAtatcagtgtggtgtgtgtggctCGGGGCTTTTACCCTGACAGTGTTACCATGTCCTGGTCTGAGAACAGCAGCAGCATGACGGGCGATGAGGTGCAGACGGGTCCGTCTCAGCGTCAGGCTGATGGCACGTTCTCCCAGACCAGCGTTCTGAAGCTCAATAAGCAGCGCTGGAGCTCCGGGGGAACCTACACGTGCCGTCTGAGTCACCCGGCGCTTTCCACACCGCTGAGCCAGAGCACCAGCCTGGCCCAGTGCGTGTAGAGAGATCACACAGTGCTGCTTCATCAGTTACGTGTTGCATAAAGAGATATATAAAATGCACCTCAGTGAACAAAAGTGTCTTTAAGAATGAGTGTGTTGTCCATTTAAACAGCTGCTTCTGTTATGGTGTAATGAGTCTCATGGCTCTCTACTCTGCTTCTTACTGCTTATGAGCTTCAAATCTATTACTATAGTAAACAAAGCATATAAAGTTTTCAAAGGAAACCTTATAATCTa
>XR_004577789.1
GTCTGAATGCTTTCTCAGATCTTCTCTGATCATCTACACAAGTTAAGACATGATGATCCTGAACGCTGTGTCTGTCACTGGACTCCTGCTCACCCTGAGTGGTTTGGCGGCGTATAATTTGAGTCAGGAGCAGTCCAAATCGGTGAAACAGGGTGACACGGTGTCGATACTCTGCACTGCAGAAAATGATGCTCATTACATTTCATGGTACCAACAAAAAGCTGGTGGTCTTCCTCAGTTTCTGCTCCGCAATGATGTAAGAGCCAGCGGATTACCTGACAGGTTCACTTTCACTGACTCGGGCAATCAGGATTATCTGAACATCAACGGAGTGAGAGCTGAAGATGAAGCGGTTTATTACTGTGCTTGTCTTAACTGTGGAGGAGCTACACAGtgctccagtccagcagagccGTCATACAAAAACCTCCTGCAGCACTTCCTCTGAAGCATGTGCTCAGAAACCTCTGACTGCTCGCAAGCAGGAGCAGCGATGTGTTCATGAATGGACTACAGCGCTGAGGTTTTTGTACTGAGCTCTAACACTGTGAGCCTATGTGTTTGCTCAAGGCACCAACCTTGTGATATCTGATCATGCGTCGTCTCCTCCGTCGCTGCTCCTGCTCACTCCCGCGGGTTCTCCGCTCTCTGAGGGTGAtatcagtgtggtgtgtgtggctCGGGGCTTTTACCCTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939213.2 True 970 mRNA 0.49 3 31545901 31548633
XR_004577789.1 False 698 misc_RNA 0.50 4 31546360 31548633

Neighbor

gene id symbol gene type direction distance location
LOC113541870 LOC108263097 coding downstream 21001 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 520056 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 539439 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 790425 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 792223 30746232 ~ 30753678 (-)
slc30a10 LOC108263333 coding upstream 64969 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 447876 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 582814 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 643217 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 766825 32315458 ~ 32331216 (-)
G55992 NA non-coding downstream 222437 31323154 ~ 31323464 (-)
trnag-gcc_4 NA non-coding downstream 685395 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 693894 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 922696 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 927714 30504336 ~ 30618187 (-)
G56173 NA non-coding upstream 84462 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 108418 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 180140 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 268620 31817253 ~ 31827134 (-)
G56315 NA non-coding upstream 296404 31845037 ~ 31846195 (-)
rsrp1 rsrp1 other downstream 1201363 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1292445 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1384677 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 1423079 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 1434740 29879295 ~ 30111161 (-)
G56150 lclat1 other upstream 14922 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 129750 31678383 ~ 31830932 (-)
G56272 NA other upstream 279181 31827814 ~ 31829484 (-)
G56303 NA other upstream 288549 31837182 ~ 31838235 (-)
brf1a brf1 other upstream 690968 32239601 ~ 32289607 (-)

Expression


Co-expression Network