slc30a10 (LOC108263333)


Basic Information

Item Value
gene id slc30a10
gene name LOC108263333
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31613602 ~ 31620331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939215.2
CCTCGTTAGGTGCTGCAGATGTGAACGGAAAGActacagagaggaggaggaggagcgtgAAGGGCGCGCGCGGGCGCGAGGCGGTGCCGGTGCGGCTTTAACGGAGCCGCTCGGCGCGCGCTTCCTCAGTGAGCTCAGCAGCTCTGCGCTCCGTCGCGCGCATCACCATGGGGCGCTACAGCGGCCAGACATGCCGCCTGATTTTCATGCTCGTGATCACGGTGATATTTTTCGTGGCCGAGATCGTTGCGGGTTATCTGGGGAACTCGCTGGCGCTGGTGTCGGATTCGTTCAACATGCTGTCGGACATCCTGTCCCTGTGCGTGGGGCTGGCTGCGGGCAGACTGGCGCGCCGGCCCGCGTCTCCGCGCTGCACGTTCGGCCTGGCCCGGGCGGAGGTGGTGGGCGCGCTGGCCAACGCGGCGTTCCTGGCGGCGCTCTGCTTCTCCGTGTCCGCCGAGGCGCTCAAGAGGCTGGCGCGGCCCGAGGCTGTGGACGAGCCGTTCATCGTGCTGGTCGTCGGCTCGCTCGGGCTCGCGGTCAACGTCGTCGGGCTGCTCGTGTTCCAGGACTGCCGGTGGCTGTGCgggaggaaggaggagggcAGAGACAAGTCTTCCGACAGCGACGGGAAAATAGTCATGAACGGCGAAGCAGGCTCTGAGCTGGCTGCTTCACGGCAACAAGATAAGAAGCAGAGCGACGGCCCACCGCTGAACATAAGAGGAGTTTTACTCCACGTGCTGAACGATGCTCTGGGctcagtagtggtggtggtggcctCAACGCTGTTTTACGTCTGGCCCCTGCCGCCCGACACCCCCTGTAACTGGCAGTGTTACGTGGACCCTAGCCTGACGCTGGTCATGGTGGCCATCATCATGACCTCAGCTGTTCCTCTGGTCAAAGAGACCACCAGAATCCTGCTGCAGATGAGTCCACCTGACCTGGACGTCTCCATGATCTtggAGGACGTGTGCCAGCTGCCCGGCGTCCTCGGCGTTCACGAAGTGCACGTGTGGGAGCTGGCCAAGGATCGGAACGTGGCCTCCATGCACGTCAAagtgacctctgaccttgaAAACTCTAAAGGCGAAATCCGGCGCCTCCATATGCAGATCAGAGAGGTGTTCCATCGACTGGGAGTCCACAGCGTCACTCTTCAGATGGAGTTCACCGACGAGGACATGGAGAACAGCCACTGCAGCACTCCGTGCATCTCCTACGACTGTCTAAAGCAATCCTGCTGTCCTGCCGATCCAAAAACGCAGAACCATACCGATCTCCATAAAGTGAACAACTCCCTTTCTTCTGGAGAAGTGGCCGTTGACTTTGCAGATGGGAATGGAGAGGAGGAACCAAAACAAAAGGAGAGCACGCCGTTTTAAACCTTCAGGTCCGGCTTCTCTAACTAAACTGAGCTTTAACGGAGTGTGTGTCCCAACGCCCAGaatggcagccattttaagaaacaTCCTAAACGCTAGAACCATAGAATCCACTCAAAACCAGTCGTTACAGATGAGGGACTGTGCATTTtccccagaatgcactgcaagCATACACATCATTCAGATGATACTCATTAAGCTTAACTGAACCTGgtcatttagtttcattaatgCTTGCCCTAACCGCTAATTAGGGGGCGTGTGATAGGACAGATATATTGTTATACTAGAAGCTAGCTATATTATAGCACAACTATAGCTACTATATTTCCgctatacacattacacatcaaCATAGTTAACAAGctgcaacaaaacaaaccaGGGTTTGATAATACTTTTAagatttacataaatattaaacaccaAAAAGGAGgcaaattttaattttcttagtttaacattttgcaattttaaaggttcagtataatattttaacatcacTTCAGCcttttataatgtaattagatgtaaaaaaaagttgaaacattttattgaaaaaggacaaaataatATCTTAGAAAAGTATTGCCCAGCCCAACTGCTAATTAGCCAGTTTGCTAGAAGACTCTTAGCTACTGACTAGGTGACAATGCTAGGAGGCTTTGTATAAAAACATTACCATTTGTCTGCTTTTAGTTGGTCCTGGCCTGCCTTGATCTGGTTTTacatatactttatttttaatcaaatttaatCTAGACATCTTTTCTACATCCTCAAAGAGACGTATCATAATCACATCATAATCCATTGCCCTGGCTAAAATCCCACTGCCTCATAAACATGGCAAAAATAACCAACAAATTCTATCAGACCATAGAGTTTGGCTCCTGTTGGTTTTTGTCCGGAGAATAAAGCTACTACGGCTCTCTAAAGCTACCCTTAAACATTCCAGATAAATATTACCTCAGACAGGtgctgctaactagctagctatggAAGAGGCTACAGTAGTGCAAATTTATATTGAAGAGCCATATTTCTAATATGGCTCTGAGAAACTCCCTGGAATATTCCAGATAAAAATCAAGGAGACTAAGCAGAGATTTTCCtctattaccaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: zinc transporter 10-like

GO:      GO:0044765

KEGG:

id description
K14697 SLC30A10, ZNT10; solute carrier family 30 (zinc transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939215.2 True 2531 mRNA 0.49 4 31613602 31620331

Neighbor

gene id symbol gene type direction distance location
LOC113541870 LOC108263097 coding downstream 88702 31519040 ~ 31524900 (-)
si:ch1073-126c3.2 NA coding downstream 587757 31022661 ~ 31025845 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding downstream 607140 30920905 ~ 31006462 (-)
trnag-gcc_2 NA coding downstream 858126 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 859924 30746232 ~ 30753678 (-)
gphb5 gphb5 coding upstream 376178 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 511116 32131447 ~ 32188847 (-)
jag2a LOC108263062 coding upstream 571519 32191850 ~ 32230995 (-)
dcdc2b dcdc2b coding upstream 695127 32315458 ~ 32331216 (-)
iqcc NA coding upstream 711062 32331393 ~ 32336477 (-)
G55992 NA non-coding downstream 290138 31323154 ~ 31323464 (-)
trnag-gcc_4 NA non-coding downstream 753096 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 761595 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 990397 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 995415 30504336 ~ 30618187 (-)
G56173 NA non-coding upstream 12764 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 36720 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 108442 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 196922 31817253 ~ 31827134 (-)
G56315 NA non-coding upstream 224706 31845037 ~ 31846195 (-)
G56150 lclat1 other downstream 12917 31563555 ~ 31600685 (-)
LOC113541990 NA other downstream 64969 31545901 ~ 31548633 (-)
rsrp1 rsrp1 other downstream 1269064 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 1360146 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 1452378 30152908 ~ 30161224 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 58052 31678383 ~ 31830932 (-)
G56272 NA other upstream 207483 31827814 ~ 31829484 (-)
G56303 NA other upstream 216851 31837182 ~ 31838235 (-)
brf1a brf1 other upstream 619270 32239601 ~ 32289607 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other upstream 726424 32346755 ~ 32354500 (-)

Expression


Co-expression Network