elovl5 (elovl5)


Basic Information

Item Value
gene id elovl5
gene name elovl5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26687125 ~ 26706755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939221.2
CGCAGTGATGTAGTAGACTTTGTCCTATCAGGCTATTGTGAGGCGTTAAACCTGTCCCGTTATCACACGCATCCCGCTTCCtccactcttcctctctctctctctctctctctctctctcacacacacacacacacacacagatactcactctctctcagactGAAACAGCAGGAGCTGGGACCCAAGGACGTCCGTCCACAAGGAGGCTAGAAATGGAAAGTTTGAACTACAGGCTGAACAAACATATTGACTCATGGATGGGTCCCAGGGATCCTCGTGTGAGAGGCTGGCTACTGCTGGACAACTACCTGCCCACTCTGGCCTTCACTATCATCTACCTCCTGATCGTGTGGATGGGACCAAAGTACATGAGGAACAGACAGCCTTTCTCCTGCCGGGGAATCTTAGTGGTGTATAATCTGGCACTcacctttctttccttttacaTGTTTTATGAGCTTGTGACTGCTGTGTGGCAAGGCGGCTATAATTTCTTCTGCCAAGACACTCACAGCGGAGGAGAGGCTGACGACAGGATTATTCACGTGCTGTGGTGGTACTACTTCTCCAAGCTCATTGAGTTTATGGATACCTTCTTCTTCATCGTGCGCAAAAACAACCACCAGATCACATTCCTGCACATCTACCACCATGCCACCATGCTGAACATCTGGTGGTTCGTCATGAACTGGGTGCCATGTGGACACTCCTATTTTGGGGCCTCCTTTAACAGCTTCATCCATGTGCTGATGTACTCTTATTACGGGCTCTCAGCTATTCCTGCCATAAGGCCGTACCTCTGGTGGAAGAAGTATATAACACAAGGACAGCTGATCCAGTTCGTCCTGACCATGATCCAGACATCCTGTGCTGTGGTGTGGCCCTGCGGTTTCCCAATGGGCTGGCTGTATTTCCAGATCAGTTATATGATCACccttattattttcttcttaaactTCTACATACAGACTTATAAGAAGCCCGGGGCTGCGCTGAAAAAGGATCAGCGACACAACGTCGTTAAATCTGTGAACGGCCACTCGAACGGTGCGACTCACACAGAAACAGTAAAGCACAGGAAGAGGGCAGATTGAGGAGCTGTCCATTCACCCAGTTCCTCTATATCTGCGTAACACTTCTGTGAATGTGTTGAAAGACTTCCCCAGTCTacacactgcagagagagagaagcaaaataaaagcaaatccATATTAATCTTGAAGAGAGTCATAACATTTTGCACACTGTGTCCTGTTATTGTTCCTATTGAATTCAAAGACAATACGAGGAGAAACAcactgtagtttaaaaaaaaaaagttataacaGGGTCTGAGTTCTGTAGAATGTCTTAGAGTATATTAATGTCTTGTATGTGTgacggcctgggaaaacccatcggatATTGTCAGTGCGGCTGAATTCTTCAGAACggctactttaagaaaacataaatatatttcacccaAAAGTTTTGTAGAAATATTTTGATTTACTTTCTAACCTTTCCTTGGCTTTCTGCAAACATCATGTTAGGTTGACAAGGAtccagtttaacaaacgcaACTGTAAaagcagtcagtctgcctaaagagcgctagcttgctagctaaatgtGCTTTCTTTGGCCAGGGAACgtcatgctttgatcaaatTGTTGGTTATTTGCCATAGAGAATTGGACGTAAGCCAAATAGATTCTATTTCCTTCATCAATTTTCACTAAAGTTATTTTCTTCATTAACAAGTTACACATGTATATATCAGCATAGTGTTTGTTTACGCCTGTCAGCTCAGGATAATATTAAATCAGGTTAAAGATCATTGCAAATGAGATAATATAGACATGACAACAGGATAATATTAAATCAGGTTTAAGATCAATATAAATGAGATCATATAGAGATGACAACAGAGTAACTGAACACTGGACATCTAGTccatactgtaaatataatgaattctAATAATCTATAACagttaccttttttttaataaagtataaGATATTAAACATGGAATGACAGCTGGATGGACGAGACTTCAGAATAGCCTGTTAGTCTGTAGGCTATGAAAGACAGGAATAAGGTTAGACTTAGGTTTTATggtcatgttcattattttaatcttttactgatcaaatatatatttcatgtgTGAATTAAATCAGTTAATAGCAGTTGCTTTTACACAaccagtgtgtttgtgttgcctGTCAGTAAAATCAGAACAGAATCTTTAAAACCTCCATATTTGTTGGTAACCAAATTGTAAAACGTCATAACTatacttgtggttgagatacatgcaaaagagaaacatgttTCAGAACTACGTGTAGTACAGATTTGAAAAAATctccatgtgaagggttttccacGGCCGCCACACATATTTTTATGATTGTTTTAATGGATgagactgttttgaacacaaaatggaaatgtgcttatacaaaaaaaaagctataattTGGAAAATTGATAGATGATAATATTTAGAAAAGGGTACACAGAAGCGATAATTGCAATGTTTTGCAATGGGGTccaaaagtttttcttttttattacttttattaatttagaaaatgtaataatttgatCACTTAATTCTATTATCATCAGTAACATGAgttcaaaatatttacatgaatttcatgtaattttattatttcccCAGTGCatttgagctggcatggactccactagttTGTAAAACCTGACGATTCATATTATATCGAATCCATTGCAGTGTCCTCTGAACATGTTTAATGGAATGGATAAGACTCAAAGAAAACTTGATTTGTGGAAAGCCATtaacaaatttgcttacattttaaataggaacctagaaatagtgcagcatcttgaatattaaatagttCTTAAACTTTCTGTGTATTttagtgtggtctcagacttttggaccccactgtatatgcAATACTTTGTAAGGATATTGTGATTTTTAAGCACATAAAATATGCTGTATGAATATTACAGCCATATAACTCACTGTCAGATGCAAAACCATCAGGTCTAAATATAGCTAATATTGTTTTATCATGTCTTGCATTGAGAAACATAGGACTTTTATGATACATGCTGGTGCTTCACGTTTAAATCAGCGGCTTACGAGATACATGACCATTCATTCTTTTGTATAGTGATGCTCAGCTATCCAATATCATTCCAGCCAAACACCTGAGACAAAACCGTCTAAATAAGCAATGTCACTTGAACATAGATTAGATTAAACCTCGCTGGCGTCCATTTGAATTGCGAGATATTCGATATTTTATTTGGACTTGCAGTGGTCTGAGAGTCTTAGTGATCCAAGATTCATTAGGCAGTCCATGAATCACAGAATCAACTATATAGTCtgttagaaataaaatgtccaTCATACAGATTAACTAACGATTTCTAATGGAATAGCGActgatttatttgaataaagtaataatatttGGTTCACATGATGATTTTGTTTAGCACTGTCTGAACTACGTGGGCATCAATTAGTACAGCttctagaaaaataataatgaagaaagagagaaacagttcCTAAACCTCGAACATAAGCATCATTAAGCATCGTGATACGGTATGTTACTATAAATTGtgccataaaatataaaacagtctATTCCATTTATGCGCATAACTCTAATCAAATCAATTAGTCTGTTTAGAAGTCTAGGCTTGTGCACCATTTGCACTAAccgaccactttattaggaacgccCGTAGATCTGCTTATTCATGATTCATGTAGTTgtcaaatcagccaatcatgtggcagcagcacaacattgatcaagagcttcagttaattccTGGTCTTGGCTGAGTGTTGTGCAttcggagatgcttttctgctcaccatggttgtaacgAGTGGTTACTGAGTTACCATAaacttcttgtcagctcaaaccagtcttgCCATTCTGCCCTGACCTCTGTCATTAAAAAGCTGTTTCTactctggatgtttttgtttttcgcaccattctgcgtaaaatctagagactgttgtacgTGACAGATCCAACACCCGTGGCAAGGCACGGTCAAGTCATCACATTTTCCCACATtctaatgtttaatgtgaacaataTCTGAAACTCTTGACTTgcatgtgcatgattttatgcattgtgctgctgccacttgaATGGTTAATTGGCTAACTGCATGAacaagcaggtgtacaggtgttcctaataaagtggtcagtgagtgtatttcagTGACTGTAACTGTACACTTTAAACTATAATACATGTACCACTACCTGTAGCTATACTGTCTCTCTGAACATTGCCTTAAAAACATAATGCAACCTTGCTAGCATTTTCAACTAGCGTCTCCTCTGTGTGTATTCTATGTGATGTTTTACATGACATAGAGTTCATTATTGTAACACTATGTATAGTGACAAGACATTGCTTTAGATGATCTAAGCTCTTAATTGTTCGAAGATCATGTGTTGTTGTAACAATTTTCAAATCGTCATGCAGGAAAATGCATAAAAGCTACGGTAGAAACTGTGTTGTTATTgtgagtgaaataaataaaggccTTAGTGTTTACCCTGA

Function

symbol description
elovl5 Enables fatty acid elongase activity. Acts upstream of or within fatty acid elongation, unsaturated fatty acid; long-chain fatty acid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to be integral component of plasma membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including blood; digestive system; fat cell; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 38. Orthologous to human ELOVL5 (ELOVL fatty acid elongase 5).

NR:

description
elongation of very long chain fatty acids protein 5-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10244 ELOVL5; elongation of very long chain fatty acids protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939221.2 True 4608 mRNA 0.38 8 26687125 26706755

Neighbor

gene id symbol gene type direction distance location
arfgef3 arfgef3,LOC107751324,LOC107688785 coding downstream 19107 26639549 ~ 26668018 (-)
lhb LOC100304481,LOC108425477 coding downstream 57247 26629250 ~ 26629878 (-)
plpp4 plpp4 coding downstream 66139 26529006 ~ 26620986 (-)
wdr11 wdr11,LOC102787883 coding downstream 219744 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 335974 26350129 ~ 26351151 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 1764 26708519 ~ 26719590 (-)
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding upstream 14064 26720819 ~ 26725438 (-)
bmp5 bmp5,LOC107712332 coding upstream 252349 26959104 ~ 26969207 (-)
col21a1 col21a1,LOC108263596,LOC107681042,LOC107565055 coding upstream 268970 26975725 ~ 27025890 (-)
zmp:0000000760 LOC108262759 coding upstream 327169 27033924 ~ 27055678 (-)
G53210 NA non-coding downstream 18304 26668613 ~ 26668821 (-)
G53183 NA non-coding downstream 139616 26547296 ~ 26547509 (-)
G53182 NA non-coding downstream 143903 26542964 ~ 26543222 (-)
G53181 NA non-coding downstream 147329 26539529 ~ 26539796 (-)
G53179 NA non-coding downstream 151831 26535083 ~ 26535294 (-)
G53204 NA non-coding upstream 947 26707702 ~ 26708397 (-)
G53216 NA non-coding upstream 13321 26720076 ~ 26720660 (-)
LOC113542110 NA non-coding upstream 31788 26738543 ~ 26741519 (-)
G53250 NA non-coding upstream 91924 26798679 ~ 26799608 (-)
G53761 NA non-coding upstream 160903 26867658 ~ 26867877 (-)
LOC113542183 NA other downstream 777006 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1951237 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2035278 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2554642 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2647025 24016896 ~ 24040100 (-)
dst dst other upstream 351142 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 831014 27537769 ~ 27541331 (-)
G54269 NA other upstream 1726465 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3172540 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3405076 30111831 ~ 30122822 (-)

Expression


Co-expression Network