LOC113542008 (LOC108261848,LOC108262968)


Basic Information

Item Value
gene id LOC113542008
gene name LOC108261848,LOC108262968
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7325374 ~ 7338431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939243.2
GAAAGATCCAGTAGAATATTCAAGAATATAGGAAAGCCACCAATATTTGCTGATGAACCAAAGCTCAATGTCTTTTGAAATCCAGAGTGAAATGAAAAGTTCCTTAGGTGGTGCTATACCTGCAGTAAATAAATTCTTTCGCGCTGACTGAGAAAAGGTTGTGATATAAACAGTGCATTAGGTGCGCAGGAACTCCACCTCATTGTTCATTTCTTTAGTGGCAGGCTTCTGTAAAACTGATTCAGCAATGGAGTACGAGATGAACCATAGGAGGCGAGGCTTGGCACTAATCTTCAACCAGGAAAACTTTCAATATTCACGGCAGCGCCGTGGCACAAATAAAGACAGAGACAACCTCACAGAAAGatttcaaGCCTTAGGGTTTGAAGTGAACTCTCACAATGACAAACCTAAGGCAGAGGTGCTAAAAGAATTACATAAAGCTGCAGAAGCCAACCACGCAGATGCCGACTGCTTTGTCTGCATTTTCATGACTCATGGGGAAGAAAGGCAAATTGAAGCCTATGATGATAAGATTAAAATTAAGGACATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATGTGCTGGTAAAAAATATGAAGCTGCTGTGACCGGCATGATGGCAGGGGACagtgatgatgaggaagaggaggaggaagcagCTAACATCTACACCATCCCAGCAGGGGCAGACTTCCTCATGTGTTACTCTGTAGCAGAGGGATTCTATTCATTTCGTGATGTAAATGCTGGATCATTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAGCTCCTGACGCTGGTCAATCTGAAGGTTTCTCGACGTACCGCAGACGTGGGCAATTTtaggaataaaaaacagatgCCCTGCTTCACCTCCATGCTGACTAAAAAAGTCTATTTTAGGTGCAACAAATAG
>XM_034302878.1
TTAGTGGCAGGCTTCTGtcaaaaaatattttctgcctTAAAACAGTCTTGTTTCAGAAGTGGATTGCTGAAATATAGAGCAGCTACAAACCGGAAGAGAGAACATGTCTGGGACTGGTGCGCAAAGTAAAAGTAAAACTGATTCAGCAATGGAGTACGAGATGAACCATAGGAGGCGAGGCTTGGCACTAATCTTCAACCAGGAAAACTTTCAATATTCACGGCAGCGCCGTGGCACAAATAAAGACAGAGACAACCTCACAGAAAGatttcaaGCCTTAGGGTTTGAAGTGAACTCTCACAATGACAAACCTAAGGCAGAGGTGCTAAAAGAATTACATAAAGCTGCAGAAGCCAACCACGCAGATGCCGACTGCTTTGTCTGCATTTTCATGACTCATGGGGAAGAAAGGCAAATTGAAGCCTATGATGATAAGATTAAAATTAAGGACATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATGTGCTGGTAAAAAATATGAAGCTGCTGTGACCGGCATGATGGCAGGGGACagtgatgatgaggaagaggaggaggaagcagCTAACATCTACACCATCCCAGCAGGGGCAGACTTCCTCATGTGTTACTCTGTAGCAGAGGGATTCTATTCATTTCGTGATGTAAATGCTGGATCATTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAGCTCCTGACGCTGGTCAATCTGAAGGTTTCTCGACGTACCGCAGACGTGGGCAATTTtaggaataaaaaacagatgCCCTGCTTCACCTCCATGCTGACTAAAAAAGTCTATTTTAGGTGCAACAAATAG
>XM_034302879.1
TTGTGATATAAGCAGTGCATTAGGTGCGCAGGAACTCCACCTCATTGTTCATTTCTTTAGTGGCAGGCTTCTGTCTTGTTTCAGAAGTGGATTGCTGAAATATAGAGCAGCTACAAACCGGAAGAGAGAACATGTCTGGGACTGGTGCGCAAAGTAAAAGTAAAACTGATTCAGCAATGGAGTACGAGATGAACCATAGGAGGCGAGGCTTGGCACTAATCTTCAACCAGGAAAACTTTCAATATTCACGGCAGCGCCGTGGCACAAATAAAGACAGAGACAACCTCACAGAAAGatttcaaGCCTTAGGGTTTGAAGTGAACTCTCACAATGACAAACCTAAGGCAGAGGTGCTAAAAGAATTACATAAAGCTGCAGAAGCCAACCACGCAGATGCCGACTGCTTTGTCTGCATTTTCATGACTCATGGGGAAGAAAGGCAAATTGAAGCCTATGATGATAAGATTAAAATTAAGGACATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATGTGCTGGTAAAAAATATGAAGCTGCTGTGACCGGCATGATGGCAGGGGACagtgatgatgaggaagaggaggaggaagcagCTAACATCTACACCATCCCAGCAGGGGCAGACTTCCTCATGTGTTACTCTGTAGCAGAGGGATTCTATTCATTTCGTGATGTAAATGCTGGATCATTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAGCTCCTGACGCTGGTCAATCTGAAGGTTTCTCGACGTACCGCAGACGTGGGCAATTTtaggaataaaaaacagatgCCCTGCTTCACCTCCATGCTGACTAAAAAAGTCTATTTTAGGTGCAACAAATAGTAAAGCACCCGCTCCCAGTGCATTACTATTTACCATTACTCACTTAATGatcaataaacatttttggtgttattactgttttttttcccctaacatTTTACAAGGATTGTATCAACATAATATATCTATGAGATGATACCTAACAGAATTACAAGACTCAGTCACTAAATCAGTTAGAGCTGcttaatcagatttgagaattcaactgcgCTGACCAGTGTGGTGGTATAAAATGCTAATAATGCACAGTGATTAGATAGACATTTTCCTTAGTTATATTACATTTGACTATTGCAAACCTGTAAATTTAAACATTCATTATGTTATGATCATAGACAAATAAAGTAAATCATTAATGAATGTTGTTCAATAGGTTAAGGATTACAGCTTTCATGTGTCATATGTTTGTGTTGCAAAGCTggctttcattttcactttgtgATAGGGCAAATGTTTTTCTAGGGAATTTTTTCCCAGCCTCAGATTAACATTGACATGCCTTTCTGGTGAAATTCCCTTTAAGAGGTTGTCATTTTCCTGATTTCACTACTGTCTGATAAGATATGATATACAGACTGACACTTCAGCCTTTTTTTCCATAATTTATCATTTGCTGAATATccataatttataatatattcattattttggtATTTATATCCATTCAtcactgaaattaaaattacaagcagtttataaactctaataatcttcataaagctctaataatgtTCTGTAAGTAATTACTTGATAATTTATAATAACATGTCATGCAAGTAGTACTACTAATGCTATATGTGGTAGCGCACAacctgtataaataataatgccctgtgaataattcagtttttttgtatagcacttttgacaatggacactgtcacaaagcagctttacagaaatatatactctctatatgtgtatatatatatatatttaccaaaacactctatgcccatgacCCCTCCAGATCTGAACCTTTAGCTAAGAAAAAAtctattaacaaaaggcttgcCTAAACAGacatgttttcagcctagactttcAGACCATGAGACTCAAACACCTGTCTGAGTCCCAAACattaattggaaggctgttcctttctgccccctgctgcagacttcattaaaatattcctgtaccttttgatcaaagtaggtgTGGCTGATCACAAAAGGCCagaagttcgctcaggtactgctTTGCATGACCATTCAGTGCAGTTATAGCACTTTATTAGAGCTTTATGAAGCATGATTAAAGtttataaaatgcttaaaattataaGCACACATAATAATTTATGAACATAAGTTTCATAGAAGGTGTTATGACTTACTCTATAAGGTACCATAACTATGTGGtttgaattatttttctgtaagtcTTTTTATGTTACAGTTTTTAAGTAGTGATGCATAGTTTTGCTTGACTGAGATCACTGTTAGTACCACTGAATTTATTGCATTGTGTTAAAGTTTCCTATTTAAATATCAA
>XM_034302880.1
TTGTGATATAAGCAGTGCATTAGGTGCGCAGGAACTCCACCTCATTGTTCATTTCTTTAGTGGCAGGCTTCTGTCTTGTTTCAGAAGTGGATTGCTGAAATATAGAGCAGCTACAAACCGGAAGAGAGAACATGTCTGGGACTGGTGCGCAAAGTAAAAGTAAAACTGATTCACCTATGGAGTACCAGATGAACCACAAGAGGCGAGGCCTGGCACTAATCTTCAACCAGGAAAAGCTTCAAGATTTAACAGAGCGCCATGACACAAATAAGGACAGAGACAACCTCACAGAACGatTGCAAGACTTAGGGTTTGAAGTGAAACTTCACAATGACAAAAATAAGGAAGAGATGCTGAAGGAAATGCATAAAGTTGCAGCAGCCAACCACACAGATGCCGACTGCTTTGTCTGCATTTTCCTGACTTGTGGGGAAGAAGGGCAAATTAACACTTCCAATGATTCAATTAAGATTAAGGAAATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATTCGCTGGTAACAAACTTGAAGCTGCTGTGACCGGCATGATGGCAGGGGACACTGATGAAGAGGTGGAGGAAGCGGCTAACATCTACACCATCCCAGCAGGGGCAGATTTCCTCATGTGTTACTCTGTAGCAGAGGAGTCCGGATCGTTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAACTCCTGACACTGGTCAACCTGAAGGTTTCCCGACATAACATCAAACTGAGAGGTggagaaatgcaaaaaatacaGATGCCCTACTTCACCTCCATGCTGACTAAAAAACTCTACTTTAGATCCAAGAAATAGTAAATCACCCACACCCTGTGCATTACTATTCACCACTACTCACTTAACTTCACCACTACCCAATAAACACTGTCAATGAGTAAA
>XM_034302881.1
TATAGGAAAGCCACCAATATTTGCTGATGAACCAAAGCTCAATGTCTTTTGAAATCCAGAGTGAAATGAAAAGTTCCTGTGGTGCTATACCTGCAGTAAATAAATTCTTTCGCGCTGACTGAGAAAAGGTTGTGATATAAACAGTGCATTAGGTGCGCAGGAACTCCACCTCATTGTTCATTTCTTTAGTGGCAGGCTTCTGTAAAACTGATTCAGCAATGGAGTACGAGATGAACCATAGGAGGCGAGGCTTGGCACTAATCTTCAACCAGGAAAACTTTCAATATTCACGGCAGCGCCGTGGCACAAATAAAGACAGAGACAACCTCACAGAAAGatttcaaGCCTTAGGGTTTGAAGTGAACTCTCACAATGACAAACCTAAGGCAGAGGTGCTAAAAGAATTACATAAAGCTGCAGAAGCCAACCACGCAGATGCCGACTGCTTTGTCTGCATTTTCATGACTCATGGGGAAGAAAGGCAAATTGAAGCCTATGATGATAAGATTAAAATTAAGGACATAACAGATCTCTTCAGAGGAGATCAGTGCAAGAGCCTTGTAGGGAAGCCCAAGATCTTCATCTTCCAGGCATGTGCTGGTAAAAAATATGAAGCTGCTGTGACCGGCATGATGGCAGGGGACagtgatgatgaggaagaggaggaggaagcagCTAACATCTACACCATCCCAGCAGGGGCAGACTTCCTCATGTGTTACTCTGTAGCAGAGGGATTCTATTCATTTCGTGATGTAAATGCTGGATCATTCTACATTCAGGATTTATGTGAAACACTGCAACAGCATGGCTCAACTATGGAGTTCACCGAGCTCCTGACGCTGGTCAATCTGAAGGTTTCTCGACGTACCGCAGACGTGGGCAATTTtaggaataaaaaacagatgCCCTGCTTCACCTCCATGCTGACTAAAAAAGTCTATTTTAGGTGCAACAAATAG

Function

NR:

description
PREDICTED: caspase-6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939243.2 False 991 mRNA 0.43 7 7326874 7330102
XM_034302878.1 False 892 mRNA 0.44 8 7326874 7338375
XM_034302879.1 True 2420 mRNA 0.37 8 7325374 7338431
XM_034302880.1 False 977 mRNA 0.44 8 7332429 7338431
XM_034302881.1 False 962 mRNA 0.44 7 7326874 7330076

Neighbor

gene id symbol gene type direction distance location
LOC113538928 LOC108261848,LOC108262968 coding downstream 368 7319099 ~ 7325006 (-)
gstcd gstcd,LOC107095855,LOC106602269 coding downstream 205754 7017457 ~ 7119620 (-)
npnta npnt coding downstream 319340 6942697 ~ 7006034 (-)
aimp1a aimp1 coding downstream 480883 6824909 ~ 6844491 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding downstream 609111 6700324 ~ 6716263 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding upstream 23484 7361915 ~ 7384163 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding upstream 291738 7630169 ~ 7646075 (-)
zgc:153642 NA coding upstream 364221 7702652 ~ 7715901 (-)
hmx4 LOC108262851 coding upstream 484699 7823130 ~ 7825476 (-)
hmx1 LOC108262852 coding upstream 488203 7826634 ~ 7829546 (-)
G42173 NA non-coding downstream 9778 7313668 ~ 7315596 (-)
LOC117596848 NA non-coding downstream 183072 7141099 ~ 7142302 (-)
G42008 NA non-coding downstream 307969 7016765 ~ 7017405 (-)
G41944 NA non-coding downstream 313068 7012093 ~ 7012306 (-)
G41938 NA non-coding downstream 383916 6941240 ~ 6941458 (-)
G42179 NA non-coding upstream 4036 7342467 ~ 7342681 (-)
G42315 NA non-coding upstream 98011 7436442 ~ 7438889 (-)
G42361 NA non-coding upstream 229940 7568371 ~ 7652220 (-)
G42391 NA non-coding upstream 333156 7671587 ~ 7672864 (-)
G42392 NA non-coding upstream 337057 7675488 ~ 7675772 (-)
lef1 lef1,LOC103361279 other downstream 120675 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 1505861 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2097407 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 2419135 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 2715924 4545139 ~ 4609450 (-)
maml3 maml3 other upstream 100473 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 796210 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1131555 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1131927 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 1144872 8483303 ~ 8492983 (-)

Expression


Co-expression Network