LOC113542016 (sipa1l2)


Basic Information

Item Value
gene id LOC113542016
gene name sipa1l2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24812974 ~ 25090822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939252.2
GCTTGGAATGCTGGGGGAAAGCGGTCGTCGGGAGGGTGGAGGGATTTGGTTTAACCTAGCGCCTTCAATAGAATCATAACGATCTACAGCTTCTATGTTAGTAAACTATTTGGATTTTGTCTACTAATGTTAAAGattcagCTCCACCAGGATATGCACTATATTAGCTCATCTTTCTGAAAAGAGCACTGCCTATCTAAGCCTCATTGCTCATCAGCCAGTCTTATTACCCAAATTCTTTTTGTCTGTCATTGACCTAGCCAATCCTAAGGAATTATGGACTTAGGCTAAAGGTTGGCCCTTTGCTATCTCTGAAGCCTGAGAAGGAAGGCCTCTTCTTTAAGACCTATTACAATGTAATTAATAGAGTACTTGTGTTCCTGCTTTCCCCACCAGCTGCAAACAGGACAGTTCTATAGACTGCAGTGACTGGAGGCCTTCAGGTCTCCTCTAAAGTCATGCAGCCTTCAGAGGAGATTTTCAACAGGAAACTGAGGTCCTCGAATGGAAACAAAGAAATTCCAGCTACCAGCCTGCAGTGCAAGTCTAATGGGGTAGGAAAAGTCACATCTGCCATGCCTAAAATGGGAGTGCGTGCCAGGATATCAGACTGGCCGCCCAAAAAAGAAGGGTGGGAGAATCTATGTGGATCAAACTATGAGAGAGTTATTATGGCCTTGCAAAATGGGCAGCCAGACCAAAGTATAGAGATCACTGATGTGAATGAAGCACCCTTGGAACTTGATTATCCTGACACAAAATATTCACTGAGTGACCTTTTGAGTCAGTCCCATTTAAAGGGACTTCCTCCTATTCGACAGCGAAGTAACAGTGATGTGACTATCAGTGATATAGATGCTGAGGACCTAATGCATCAAAAAGCTGTCAACCCAAACACAGGTGCTTCATTGCATCGGGAGTATGGCAGCACTTCTTCTATTGACCAACAAGGTCTAGGTGGGGATGGAGTCCTTGCACTGTTAAAGGATTACAGAGTAGATACATTGGATCATCTGAATACACACTCAACTGGTTTCCCAGAGCTGTACTACAACAGTGCTCTCTCACCTAGCTTGCAGACAGCAGCTCAAATAGCACGTGGAGAGATCATTTGTATCTCAGGCTATGACTATGTTGGCAATTCCCTTCTCTACAATCAAGAACGAGAAAAGACCTTCGTGCATCGTCTGAAGTCAGAGTCATCTGAGACATCTCTATTCCGGAAGTTGAGAACTATTAAAAGTGAGCATGATGGTCTCCGGCTTTCAACAGAGCAGGAAGACCGGCGGTCTCTTGGCGTCCCGAAATTCTTTGCTCACTATGATGTACAGAGTGCACTCTTCAATGTTAGTGATGCTGTGGCAAATCAAGTCAGCCTTTGTCATAGGAAGAACACTACTACTGGTGCCTCGGCTGCTTCACAGTATCAAGTCCCATGTAGTGGTCCAATATGTGGAAATACGAGTGGAACTGCACCAATGTTCGAATCTCCACTGGGCAGCAATGAAGAGTTGAACCCTAAACAGAATCTTGACGCGGATGAGGGTGATGGAAAGAGCAATGGGCTAGTGCTAAGTTGCCCACATTTCCGGAATGAGATTGGTGGTGAGGGTGAAAGGAAGATTTCTTTGTCCAGGGCCAACAGTGCCAACTATAGTGGAGGAGAAAGCTGCTCCTTTGAGTCCTCATTAAGCTCTCACTGCACAAATGCTGGTGTTTCTGTGCTGGAGGTACCCCGGGAAAACCAACCAGTCCATCGTGAAAAAGTGAAGCGATACATCATTGAGCACATTGACTTGGGGGCATACTATTACCATAAATATTTCTATGGAAAAGACCACCAGAACTACTTTGGCATGGATGAGAACCTGGGTCCTGTGGCCATCAGTGTGCGACGAGAAAAGCTTGAAGAGGTGAAGGAGAAGGAGGGGTCATCATACAATTACCGTATTGTCTTCAGGACCAGTCAGCTGACTACTCTTCGAGGAGCAATTCTGGAAGATGCAGTGCCTTCCACAGCGAGGCATGGCACAGCCCGTGGCCTCCCCCTGAAGGAGGTGCTGGAGTATGTATTTCCTGAGCTCAACATTCAGTGCCTCCGACTGGCTCTCAACTCCCCAAAAGTCCCTGAACAGCTTCTCAAACTGGATGAGCAGGGGCTAAGTTTCCAGCACAAGGTGGGTGTGTTGTACTGTAAGGCAGGTCAGAGCACAGAGGAAGAGATGTACAATAATGAGAGTGCTGGACCTGCGCTGGACGAATTCCTGGACCTGCTTGGAGAAAGAGTGCGACTAAAAGGCTTCAATAAGTACAAGGCACAGCTAGATAATAAGACGGACTCTACGGGAACCCACTCGCTCTACACTACCTACAAGGACTATGAACTAATGTTTCATGTGTCCACTCTCCTACCCTACACACCCAACAACAGACAACAGCTGCTCAGAAAGAGACACATCGGAAATGACATTGTCACCATTGTGTTTCAAGAACCAGGAGCCCTGCCTTTCACACCTAAAAACATTCGCTCCCACTTCCAGCatgtatttgttattgttaaagTCCACAATCCATGCACTGAAAACGTCTGCTACAGTGTTGCTGTAACAAGATCAAAAGATGTCCCTCTGTTTGGTCCTCCAATTCCTAAAGGTGTGACCTTCCCAAAGTCATCTGTCTTCAGGGATTTCCTGCTTGCCAAGGTAATCAATGGTGAGAATGCAGCACACAAGTCAGAGAAGTTCTATGCTATGGCTACTCGAACACGTCAAGAGTACCTTAAAGACCTAGCTGAGAATTTTGTGAGCACAGCTACTGTGGACTCGGCTCTGAAGttcagcttcatcacactgGGTGCCAAGAAAAAAGAGCGGGTCATACCACGTAGGGATGCCCACCTCCACAGCATAGGAGCCATCATGTGGAGTGTGGTGGCACGGGATTTCAGCCAGTCAGTGGATGTTCAGTGCCTGCTTGGAATCTCCAATGAGTTCATTGTGCTGATCAAGAAGGATTCGAAGAATGTGATCTTCAACTGCTCCTGTCGTGATGTGATAGGCTGGACCTCCACCATCATGAGCATTAAGGTATTCTATGAACGTGGCGAATGTATAATGTTCTCAGCCCAGGAAGGCTTTGGAGAAGACATCAGGCAAATCGTCCAACGGCTTGAGATAACCACCCATGGCTGTGAAACTACACAAATGGCACTTCGCCGGAATGGCTTGGGACAGCTGGGTTTCCATGTCAACTTTGAAGGCATTGTGGCTGATGTTGAGGCATTTGGATTTGCATGGAAAGCAGGCCTGCGCCAGGGCAGCCGCCTGGTGGAGATTTGTGAGGTGGCTGTAGCCACACTTAGTCATGAGCAGATGATCGACTTGCTACGCACTTCCATCACAGTCAAGGTGGTGATTATTCAGCCTCACGAAGATGGTACTCCCAGAAGAGGTTGTTCGGAGCTGTACCGCATTCCCATGGTGGAATACAAGCTGGATAGTGAAGGCACACCCTGTGAGTATAAGACCCCATTCAGGAGGAACACCACCTGGCACCGGGTGCCCACTACTCCAGGGGGCCAGCCCCTGTCTCAAGGCTCACCCACTCAGGGTCCTGAACAAGTGCAATGCCAACCCATCTCTCAGCACATTGAGATATCCATCCCACGCAGCACATCCTTCGACAGGAAACTGCCAGACATCTCCAGGATGGTACATGACCTGGAAAACCCACAGATATCGTGTAGTAAGGCACAGGCCAGTCAACACTACCGTAGCTCACCAAGTAACCTGTCCTCATCCAGTGACCCAGGGCCAGGTGGCAGCACAACTTGGATCCAACAGCCAGGATATGATGGGTGTCATTCACCTATACAGCATGAGCGATCGTCTGATCCTCCTGCCCATGTCATGGGAGGTGGTGAAAGCTTGAGAGAGAAACAACCAATGTTGGAGAGGGCATGCTCTGCAGAGGCCAAGTGGCACACTCCCTCTACAAAGATCCTCAACTCTCTGAATGAGAGAGGCAAAGAGTCGCCGAACAAACTGGCCAGGGGTGGAGATAAGACACCCAGCCACTCAAGCAGCAACACGCTGTCGAGCAGTACCTCTAGCAATAGTGATGAGAAGCACTTTGGTTCAGGGGAACTGATGGACCCAGAGTTTTTGGGTCTCACCTACATCAAAGGAGCTTCCACAGACAGTGGCATAGATACAACACCCTGCTGTGCACCAGTTCCACCCACAGGGGATCCCCTTGCTGCCATGGCACACCTGGTGCTACAACGCCAGGCAGCAGTGGACCGGGGACATATTTGGACCCAGGAGCATCCAGAGAACAGAGACAAGAAACCTGTACAGCTGCACCTGCCTCAGAGTTATACCATGACAAGACACACAGGCATGGACAGCAGCATGACAGACCTGACAGAGATCTCATCACACTCAAGACAGCTGTACCTGGTGGAGGCAGCCTGCCATATCcaggaaggagaaagagagggggggCGTAGGGACCAGACAGACATGACAAGGGAGTACCCGAAGGTTATGCTTCCAGACAGCCTGCCTGGAGAGGAGGTCTGCAGGAAGGCTTTGGTCTCTGAAAGTCCACTTCCCTGCCGTGTACTGTACCGCACTCTGTCAGAAGAGAGTATGTGCAGTAATCGCAAAGGCTTATCCTATGCCAGCTCCTGCAGCTCAGTGCTTGACCAGGTTCTACCAAATGATATACTGTTCAGCAGCACTCCACCTTACCGCAGCACTCTCCCCCCTCGCATTGGCCGCAGCCAGCCTTTATCCAACCTCCGGAATGAGGTCTGGTTTTCTGATGGTTCGTTGGCAGACAGGTCAAAGTTTAGTGATCCAGGACTCCTCCCCCTACCGGACACTGCCACAGGTCTGGAGTGGTCTCATCTTGTTGATGTTGCTCAAGCCTTTGAAGATCAGAATATGGCCTCTGTCTACATCATGACTGACATGCAGGGAGCTAAACCTGTTCACATCTCTCAAGAGCCCATCAGACAGGCTGCTGCAGTAGAAGGAGCTATACTACAGCCTGGAAATGGCTCGTCTGCCACTCTGACTGGTAAAGTCAACCAACTAGAAGTCGTCCTGAAGCAGCTCCAGCATGACTTAAAAAAGGAGAAAGCGGATAAAGCCATCTTGCAGGTGGAGGTACAACATCTTCGACAAGATAATATCCGTCTACAGGAGGAGTCTCAAACAGCAGCTGCTCAACTCAGGAAATTCACGGAATGGTTCTTTAATACCATTGACAAAAACCCTGAGAACAACTGAGCCTATTGTGTTAACTAAGTAAATAGGTGACCCTTTAATTGTGCAGCTCTTTCCCTGGTGTGATGTCTGTGCTCAAAAGTTAAAGAGGACCCTTTGGGCAGGCTAGATCAGCTACTGTGGCAGTTTCAATCTATGCTAGCAGACTGCTGGGATTCCTAAGAGAAAATGGAAGAGGACTTCTAAAGAGACATTGCAATTACTGTTCGATTAGTGAAGGTGAATGTTTGGTAAGTGAAATGAAGAGGAAAATGAATGTAATTCACCTGAGACCTACTTTTGCTTGGTATATCATTCACATTGCCTGTATATACAACCCCttatttgatgtttttgtttatctCCAGCATTGTAAGATGAAGTTGTTGGTAATGCTGCTCTTATAGCACTAGCAGTGTTATAATTTTTGATCACcatattttatatgcatttttaacaaaatagtTTTAGTAGTAGTTTCCAACCACAGATATGTCCTAGGCTAGGACATAGGACTCCTAGCAATGATGTAGCAGAAGTAGGAGAAAATGCATAATGTGCACAGTCCCTGTTAGTGCAAAATATGGTCAGTTCCTGTTACGGTTGCAGTTGTACAGTATTTATGCTCCCTCAAAAAGGATAGGAAAATAAGTGTTTATATGAATGATTTAtctcttttttcattatttgctTTGAGCACATGCCGTGTCTATGGCTCACtaaattcctgtgtgtgtgggtgggtgtttctgtttctgtttctgtctgcctgtctgtgtctctgtgtggttttttgttacagcagcaaGTGGTTGTATAGAGTtagtttttatttctctatGTGAGACAGTGAAGCACACTCACAATGCCAAAATGTGTATTATATCTGTACCTTAGTTGAAGtggcttgtgtttaaaagctatttatgtttatttaatctaattttgtttattttattt

Function

symbol description
sipa1l2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within regulation of small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Is expressed in brain; solid lens vesicle; and somite. Orthologous to human SIPA1L2 (signal induced proliferation associated 1 like 2).

NR:

description
PREDICTED: signal-induced proliferation-associated 1-like protein 2 isoform X1

GO: NA

KEGG:

id description
K17702 SIPA1L2, SPAL2; signal-induced proliferation-associated 1 like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939252.2 True 6233 mRNA 0.47 20 24812974 25090822

Neighbor

gene id symbol gene type direction distance location
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 496546 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 945444 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 972114 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 1062213 23727152 ~ 23750761 (-)
c1d c1d coding downstream 1132993 23672419 ~ 23679981 (-)
dnajc12 dnajc12 coding upstream 217484 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 403854 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 594862 25685684 ~ 25697851 (-)
mertka mertk coding upstream 659231 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 682065 25772887 ~ 25791400 (-)
G52283 NA non-coding downstream 23879 24788891 ~ 24789095 (-)
G52282 NA non-coding downstream 25115 24787513 ~ 24787859 (-)
G52259 NA non-coding downstream 70306 24738828 ~ 24742668 (-)
G52157 NA non-coding downstream 170058 24642096 ~ 24642916 (-)
G52147 NA non-coding downstream 207227 24548671 ~ 24605747 (-)
G52373 gpatch11 non-coding upstream 95013 25185835 ~ 25189496 (-)
G52438 NA non-coding upstream 244060 25334882 ~ 25335127 (-)
G52451 NA non-coding upstream 267799 25358621 ~ 25360911 (-)
G52452 NA non-coding upstream 270699 25361521 ~ 25362463 (-)
G52453 NA non-coding upstream 272166 25362988 ~ 25364044 (-)
herc4 herc4,LOC107689351 other downstream 77086 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 161127 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 680491 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 772874 24016896 ~ 24040100 (-)
G51576 NA other downstream 1358757 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 819196 25910018 ~ 25910119 (-)
dst dst other upstream 1967075 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2446947 27537769 ~ 27541331 (-)
G54269 NA other upstream 3342398 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4788473 29879295 ~ 30111161 (-)

Expression


Co-expression Network