wdr11 (wdr11,LOC102787883)


Basic Information

Item Value
gene id wdr11
gene name wdr11,LOC102787883
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26366178 ~ 26467381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939275.2
GTGACGCACTTGacttacttcctgtttacaaGCCCTATCTGACAACCATTCATTTCTGCATCATTTAACCAACCAAAAATTGCGGCTACTTTCATGTAGTATCGACAGTCTTTACAGACATGATTCCgtacactgtaaatattaaactaGCTGCACGGACACTTACCGGAACTCTCAGTTTACAGAACAAAACTGCAGTTGACTGgGGTTGGCAAGGTCTGATTGCTCAGGGATGCCACTCCAGCATCCTCATTATCGACCCAAAGACCGCTCAGACCATTCAGGTCCTGGAGAGACACAAAGCCAATGTTGTCAAGgtgaaATGGTCCAGGGAGAACTACCACCACAACCTGAGCTCACCTTACTCCCTGCGCCTGGCCTCGGCCGACGCCGGAGGCAAAATCATCGTGTGGGACGTGGTGAGCGGCATGGCGCACTGTGAGATCCAGGAGCACTCCAAACCCATCCAGGACATGGATTGGCTGTGGAACCAGGATGCGTCACATGACCCTTTGGCCGTGCACCCTCCCAACTACATAGTGTTGTGGAACGGAGACACGGGGACCAAGCTGTGGAAGAAGAGCTATGCTGAGAACATCTTGTCCTTCTCTTTCGACCCGTTCGACCCCTCCAATTTAGCCTTGCTGACCAGCGAGGGGATCGTTTTCATCACAGACTTCTCACCGTCCAAGCCCCCTGGCAGCAGCGGTAAGAAGGTTTACATTGCCAGCCCACACTCCAGCCCTGCTCACAGCAAACCTGCCTCCACACATCCCACTGGCGCTAAGAAAGCTCTCAACAAGGTCAAAGTGCTCATCACCAACGAGAAACCCATGGCTGAGGCAGTCACCCTGAATGACTGTCTCCAGTTGTCCTACCTACCCTCAAAGAAGAGTCATATGTTGCTGCTGTACCCCAGAGAGATCCTCATCCTGGACCTGGAGCTCAGCCAGACGGTGGGGGTGGTGGCCATCGAGCGTTCCGGCGTGCCCTTTATACAGGTGATTCCCTGCGCACAGAGGGATGCTCTCTACTGCCTGCATGAGAACGGCTGCATCACACTGCGCGTGTGTCGATCCACTGCAATCGCAGCGGAGGAAATAGCAGTGGCGTCTGAGACGGAGCTGGGAGTGCAGGAGCTGTCGTATGATCTGCGCTCTCAGTGTGACGCCATCCGCGTGACCAAGACGGTGCGGCCGTACCGGGCGGTGATCTGCCCCGTCAACGAGAACAGAGCCGCTCTGGTGGTGAGCGACGGGCGCATCATGCTCTGGGAGCTGAAAGCTCACGCTGGCAAAGCATCATCCAACCTCGGTTCCGGCTTGTCCCCGCTCTACTCTCCAGTAAATTTTTGTGGGACTCCATTGGGTCAGAACCAGAAGCGAATCCCGGACCTCTCCCTCAACACAATGATCGgtCCCACTCTGATCTCGGGTGTTGATCCCCCTGTATCCATGGTGGGGCAGCAGGAGGTGCAGCTGAAGTTCCTACTGACGGGGCTTTTATCTGGTCTGCCCCTGCCACCCTTCTCACTGCGCATGTGTCCTCCTTTAACCACTAAAAATATCCAGCACTACCAGCCGCTGCTGGCCGTGGGTTCGAGTAATGGCTCAGTGCTGGTGTATAACCTGACGAGTGGCCTCCTGTACAAAGAGCTCAGCGTGCATTCGTGTGAAGTCAGAGGGATCGAGTGGGTTAGTCTGACCAGTTTCCTGTCCTTTGCCACCTCTGCTCCCAACAACATGGGCCTTGTGAGGAATGAGCTTCAGCATGTGGACTTACGTACAGgcaGGTGCTTTGCATTCCGAGGCGAGCGCGGCAATGATGAGCCAGCCATCGAAATGATTAAAGTGTCGCATCTAAAGCAGTATCTGGTGGTGGTTTTCAGAGACAAACCCCTGGAACTCTGGGATGTGCGCACGGGAACGTTGCTGCGTGAGATGGCTAAGAACTTCCCCTCAGTTACTGCATTgGAGTGGTCTCCCTCGCACAACCTGAAAAGTCTGAAGAAGAAACAGATGGCAGCGCGGGAGGCCATGGCCAGACAGACCACACTGTCGGACGCTGAGCAGAGCAGTGTCGAGTCCTCCGTCATCAGTCTGTTGCAGGACGCAGAGAGCAAGGCAGAGACGAGTCAGGGCATCTCAGCCCGCGAGCACTTTGTGTTCACTGACACGGACGGCCAGGTCTTCCACATCACTGTGGAGGGCAACACTGTGAAGGAAGGAGCACGCATCCCTCCTGATGGGAGCATGGGCAGCATCGCCTGCATCGCGTGGAAGGGAGACACGCTAGTACTGGGAGATGTGGATGGAAACCTGAATTTCTGGGATCTGAAGGCCCGTCTGTCCCGGGGAATTCCCACACACCGAGGATGGGTAAAGAAGATCCGTTTCGCTCCTGGAAAAGGCAATCAAAAGCTACTGGTGATGTACACTGACGGAGCTGAGGTGTGGGACACCAAAGAGGTGCAGATGGTGAGCAGTATCAGAGTGGGCCGGAACGTGAGTTACCGTATTCTGGACATCGATTGGTGCACATCAGATAAGGTGGTTCTGGCCTCAGATGACGGCTGCGTCCGCGTGCTGGAGATGGCCATGAAATCTGCCAGCTATAGGATGGATGAGCAAGACCTaacagATCCAGTGTGGTGTCCGTACCTGCTCCTCCCGCGTGCTGCTCTCACCCTGAAGGCCTTCCTCCTGCTGCAGCCCTGGTCTGCAACCTTCACCATGGACATCACCCAAGTgGACTACCAAGAGAAGGACGAAATCAAAGGCTTGGTGCAAGAACAGCTGAACTCCTTGTCCAATGACATCAAAAGCGTACTCCAGGACCCAGAGCTCAATCTGCTTCAACGCTGCCTCCTAGTGTcccgGCTGTTTGGTGATGAGTcagacctgcagttttggaaTGTGGCGGCGCATTACATCAAGTCTTTTGCCCAGGCACGGCAGCTGAGTGTGCCCACTCCTGATGGGCAGACGCAGCCAGAGTGCTCCCAGAGTACCACTCAGTGCCATCTGGACATCTGCCACGATATTCTATGTGAAAGCTCCTTCTTTCAGAGATTCCAGTTAGAAAGGGTTCATCTGCAGGAGGCGAAGAGGTCCAGCTATGAACACACCAAAAAATGCGCAGACCAACTGCTTCTCCTGGGACAGACGGACCGAGCGGTGCAGCTGCTGCTAGAGACGAGTGCGGAGAACCCGAGCTACTACTGCGACTCGCTTAAAGCCTGCCTTGTGACAACTATTCCCTCCTCTGGACCTTCTCAGAGCACCATTAAACTAGTAGCCACCAATATGATCGCCAGCGGAAAGCTAGCAGAGGGCGTGCAGTTGCTGTGTTTGATTGACAAGGCAGCAGACGCCTGTCGTTATCTGCAGACATACGGCGAGTGGAACCGCGCCGCCTGGCTGGCAAAGGTGCGTCTGAACCCGACTGAAGCCTCGGATGTGCTGAAGCGCTGGGCTGAGTACCTCTGCTCTCCTCAGGTCAATCAGAAGTCCAAAGCTATCCTGGTGCTCCTCTCACTGGGCTGCTTCCAGAAAGTGGGCGAGATGCTCCACAGTATGAGGTACTTTGACCGGGCGGCGCTCTTCATTGAAGCCTGTCTGAAATACGGAGTGATGGAGGCCAACGACACCACTAATAAGCTAATAGGAGCAGCGTTCTCCGCCTACGCCGGGCTGCTTCGCTCAGTGGGACTGAGAGAGGGAGCAGCGCTGTGGGCCTCGAAGGCTGGAGGAGCAGGAGAGGAGCTCCTGGAGGAGTTGTTCCAGAACGAAGGATCCGGATCAGAGCTCACACCtggggaggaggagaagaagagcagCCTGGGCGTCACTGAATCACTctagaggaggagagagaaaaagaacaggATTGCAGGTTTAGTGGGGAACttgaataaatgtgtttattttctattcgTTGGTGCGAGCTGctttgagaagaaaaaaaaaaatcatagaaaGATATTGCATAAGGTGTGattgtgtaaattgtgtgtgtgtgtgtgtgtgagaacgcTATCGTACACACGTATAATAAAAGCATGCACTGCGTCATACTCTGGGTTTGTTTACCCTCTTTGCCCACTACCttgtttcttcctctctctctcacacacacacacacacacacgtatactgAGACAGTGTAAACATttgagacatttaaaaaaaaaaaaaaaaaaaaaaaaggcttcatcATAAACAGTAACCAAATGCAATGTGCTGCTTCAGACATTCCAAATacgtcttttttttcttttttttttgcactttttattttgaCCAAACAATTCACGTGAAGTGGAACTCTGGGTTATAAATGAAGTATTCATtatgtatgaaataaaacatgagtggagtgtttttattcctcttataccacagtgatttgccaacgatCGCGATTTCTACTTCAAACAACACGTCAAACTTTTTACCcgtttataggtacatttaatgtcatggaacatccGCGACacaacaagttagttcctgttatcacttactttatagcaggtATATAACAGTCACTCCCTCGGCagcccttttttctctctggaagttaataaggcaagaAAACACGGCTGAAAACGTGCAAAGCACTCACGACCGAGGCTCCTTCCCTAAATTGATAAATAAACACTCAACAAAAATCTACTCCATAgcaacgattatacattttttcatatctttgttaaataacagccgGTTTTCTTAATTCATTTATGTGGACTATGTGGAGCGTGCGccgtacaaatccctgtgaatgagctgttactatagaaacgatattataacatattagaatgagggcATTGATATAAATCTATCGTTTGTATGTATCATTACAGCCTGAACTACTGCCAGAGCCGTGttattataggaaattaatcaacaccttcctgTTTCGGGAATTCAACCACGCTGTGGTATATAAGATGATATCGAAGTGAGAGAATGAAGTGTAGAAAGAATATTTAAGAATATGTCTGAGGaataaacattcttttttttaattttcatatgtAAGGAGAGATGTATGGATTAAATGTATGGATTACATAAAGAAAGATTTAACTAACCTTTTAGAATCAGCTCCAGAATGaggtactgtatatacaaagaGAGTGactagttattaaaaaaaatgaataaataaaacagacagaagATTTGAAAAGTTAGGAAACTGTAAATCTTGCCAGTAAAAGGCCCAGTATTTAATCCAGCATGAACATAGCGACattgtgttttgggttttttttttttcttctttaaatcaGAGCATAGTTATGTTTTGGGCAACATTAGTGCTGTagttttatctgtgtgtgtggtgtgatgtgtgtgtttctgcaatCAGAGAGAAATGTACAGTAGTGTAATTTCTCAGCCCTATGTGTGAAACTCAAACcatgccattttcttttttatttttcattattattattattattattcatgccAGGTAAAATGTTTTGACAGATTGTTCATGAGTAGGATGACGGTTTCAATGAACTTTCGACATTGTTCTGTGAATAAACATATCCCTGTGCTGTTCTTCACCCAGTTCTTTGTAGGAAACTTCTGTGGTCCAGAAACATTGTTGTTCATTCCTGGCTTCCTTTTTAAGCAAGTATTGACTCTGAATATCGTAATGATTGATGTGGAATAATTCTGAAATTGTCTACATGGTGATGTTTCCTAGTAAACAGCGGCACAGTGAATTAGTGCATGCATTTGCTTCGTGATTATCAGAcgaataaatatgtatataggAAAAGCAATAAACGTCCATGGAATGTTA

Function

symbol description
wdr11 Acts upstream of or within cilium assembly and neural crest cell migration. Located in axoneme. Is expressed in olfactory bulb. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 14 with or without anosmia. Orthologous to human WDR11 (WD repeat domain 11).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24260 WDR11; WD repeat-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939275.2 True 5826 mRNA 0.48 30 26366178 26467381

Neighbor

gene id symbol gene type direction distance location
LOC117596837 NA coding downstream 15027 26350129 ~ 26351151 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 255769 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 292424 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 354398 26001430 ~ 26011780 (-)
anapc1 anapc1 coding downstream 399204 25923030 ~ 25966974 (-)
plpp4 plpp4 coding upstream 61625 26529006 ~ 26620986 (-)
lhb LOC100304481,LOC108425477 coding upstream 161869 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 172168 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 219744 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 241138 26708519 ~ 26719590 (-)
G53065 NA non-coding downstream 820 26365138 ~ 26365358 (-)
G53051 NA non-coding downstream 10382 26286924 ~ 26355796 (-)
G53046 NA non-coding downstream 77245 26253345 ~ 26288933 (-)
G53047 NA non-coding downstream 79898 26250355 ~ 26286280 (-)
G53048 fgfr2 non-coding downstream 90086 26273916 ~ 26276092 (-)
LOC113542010 NA non-coding upstream 38386 26505767 ~ 26506244 (-)
G53175 NA non-coding upstream 59888 26527269 ~ 26528340 (-)
G53178 NA non-coding upstream 67426 26534807 ~ 26535023 (-)
G53179 NA non-coding upstream 67702 26535083 ~ 26535294 (-)
G53181 NA non-coding upstream 72148 26539529 ~ 26539796 (-)
LOC113542183 NA other downstream 456059 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1630290 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1714331 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2233695 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2326078 24016896 ~ 24040100 (-)
dst dst other upstream 590516 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1070388 27537769 ~ 27541331 (-)
G54269 NA other upstream 1965839 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3411914 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3644450 30111831 ~ 30122822 (-)

Expression


Co-expression Network