flrt3 (flrt3,LOC107705403,LOC107654987,LOC107600562)


Basic Information

Item Value
gene id flrt3
gene name flrt3,LOC107705403,LOC107654987,LOC107600562
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28610623 ~ 28620025 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939311.2
GTGAGCTCCAGGCAGCTGAGCAGACCTGCTGAATCCtctcaacctctctctctctctctctctctctctctctctcactctctccatttgccaaggagtgtgtgtatgtgtgtgtatatgtgtgcgttCTCGTGTGAATACATGTGCGGACAcaataacacaccaacacagcTCTCTGTTCTGCGACTTCTGGGCTTATTTCTTTGGATTTCTAAGACGTTGGATATATACACTGTGGACTGACTCGTTTATTGTTGGAGGATATTTCTTTAAGTTTCAcaattttttgcattaatgctTTGCAGGATCTTCCCTGAGGTTATGACCAGCATGAACTGCCGCCTGACTGCGTGAGGTCACGCTCCTAAGGAGAGCGAAGGGGCACAAGATGCTTTCACAGCACAGGAGAGAGTGAGCAAACCTCTTCCACCGTAGAGCCACCAGGCTGGATACGTTCTTCATGCTCCTGCCACGAGAGGAGGAACACGATTTGGGGGTAACTCTAACAGAGAACAAGAGCCTCCTCGGATTTCAGCCTGCCTTTACCTGCAGGCTAAGTGGGCTCTGGGCTCTTGATGTCATGTCCATTCTACCGAAGGACATACCGGAACCCTACAAAGGAATCTCCCAGACTCACAAAAGGGTCTAATTAGGGGTCCTAACCACTGCGCCGTGAAGTAAAAGGATTCTTCACGCACTGGACTCCCtctgtatctttttttctttttttccccattttttttaaattatctgaATTGCATGCCTGCATTAGTGCACTAGAGGTCTGTTTTGAAGCAGAGGAGTTTTCTTTAGAGGTTTATCTACTACAAAACCTTTGATGGCATGAACTGTAGACACTGCGGTACAAGGCAGGAGGTCGGCAGTACAAACAAGGATCAGCTGGATCAGGATATAACCAAAGAAGACTCTTCGGACAGTGCAGAGAAGAAAGGGGGAGTTTAAAGCATCACTGTTTTTTGGGTGAAAGAAGAGGATTAACTGGCTCCTCTAAATCAGGGAGGACAAACAAACTGAGAACATTAATAATGGCGTGCCAGTACAAGTCCTTCTTCGTCTTCTTCATCAGAGCTGGGGTTCTCTTGGGTCTGGCCAATCCACTGGTGACCTCAGCCTCCTGTCCATCACAGTGCCGGTGTGATGGGACATTCATCTACTGCAATGACCGGGAGCTTACTTCTATTCCTACAGGAATCCCACAGGATGCCACCGTCCTCTTCCTACAGAACAACAGAATTAAGAGCGCAGGCATCCCTGCTGACCTACGGAGACTCAACAATGTGGAGAAGATCTACCTATATTGCAACAACTTGGATGAGTTTCCTACCAACCTTCCTGTGAATGTCAAGGAGCTCCATCTTCAGGAAAACAACATCCGGACTATCACCCATGCCTCATTGGCACAAATTCCCTTCATTGAGGAATTACACTTGGACGACAATTCTGTGTCCGCTGTCAGTATAGAGGAGGGAGCGTTCCGAGACAGCAACCATCTGAGGTTACTCTTCCTTTCACGCAATCATCTGAGCACCATTCCCTCTGGTCTACCCATGACCATTGAGGAGCTTCGCTTTGATGACAACCGCATCTCCTCCATTTCTGAGGCATCCCTGCAAGATCTGATCAATCTAAAACGTCTGGTGCTGGATGGCAATCTCTTGAACAACCGGGGTATTGGGGAAATGGCCTTTGTTAATTTGGTCAACCTGACTGAGCTTTCACTGGTGCGTAACTCCCTCACATCGCCACCCGCCAACCTGCCGGGCACCAGCCTTGAGAAATTACAGCTGCAGGACAACCACATAGACAGGGTACCGGTAGGTGCCTTTGCTTTCCTACGCCAGCTGTACCGCCTGGATCTGTCTGGCAACAAATTGAGCAGCCTGCCCATGGGGGTTTTTGATGACCTAGATAACCTTACCCATCTGCTGCTGCGCAACAACCCATGGTACTGCAACTGCAGAATGAAGTGGGTCCGAGACTGGCTGCGCTTGTTGCCCTCTAAGGTCAATGTGCGTGGCTTTATGTGCCAAGGTCCTGATAAGGTCAAAGGAATGGCTATTAAGGATCTATCCACAGAGCTCTTTGATTGTTCTGAAACAGAAGTCTCTCCAACATATGAGACGAGCACAGTCTCCATCACGCTGCCACCATCTCGTCCCCAATGGCCACTTTATGTGACTAAAAGACCAGTGATTAAGGGGCCAGACTTTGGAAAGAACTATCGCAGTACTACGCCACCAAGTCATAAGATTATCACAATAAGTGTTAAATCCAGTACTCCAGACACGGTGCACATATCCTGGAGGGTATCACAGCCAATGACTGCCCTGCGGCTCAGCTGGTTAAAACTGGGCCACAGCCCTGCATTTGGGTCCATCACCGAGACCATTGTGCAAGGGGATAGGACGGAGTACTTGCTTACAGCTCTGGAGCCAGAATCCTCCTATCGGATATGCATGGTTCCTATGGAGACCAGTAATATTTACTTGTCAGATGAGACACCTGTTTGCATAGAGACAGAAACAGGCTCCTTAAAAGCATACAACCCCACTACGACCTTAAATAGGGAGCAGGAGAAGGAGCCTTACAAAAATTCTAGTCTGCCTTTAGCTGCGATTATAGGAGGAGCCGTGGCACTTTCGGCCATCATAATGCTGGCACTAGTGTGCTGGTACGTCCACAGGAATAGTTCTTTGTTTTCCAGGAATTGCACATACAATAAAGGGCGCAGGAGGAAGGATGACTATGCGGAGGCTGGTACAAAGAAGGACAACTCCATCTTGGAGATTAGAGAGACTTCTTTTCAAATGATACCCATAAATCACATGCCAGTGTCCAAGGAAGAGTTTGTGATACACACAATTTTTCCTCCTAATGGTTTAAACCTTTACAAGAGTCCACACAGTGAAAACAGTATCAACAACAGAAGCTACAGAGACAGTGGAATACCAGATTCAGACCACTCCCATTCATGATAATGTGTGCAGATTTAAAAGACGTTTTATTACGAGTGACTGACATCAGGACTGCCCGGTCTTTTACAAAACACTGGATTGAAAAGACTGAGAAAGCAATGTTCTGTACATTTgccatataatttatatttaaggaCAGTTTATTAAAAGGAACAAGGCTACAATTGCAGGCCATCACTGAGTCCTCAGTGTGTGCTGTCAACAACtgcaattatatattttagagGTTTGTAGTAATTTGTACTGTACATCCTTTGCTTAAGGTTTCAGaccaattaaaaaaagtctttgtgCTTGACTGAGA

Function

symbol description
flrt3 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in several structures, including mesoderm; midbrain hindbrain boundary neural keel; nervous system; optic primordium; and optic vesicle. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 21 with or without anosmia. Orthologous to human FLRT3 (fibronectin leucine rich transmembrane protein 3).

NR:

description
leucine-rich repeat transmembrane protein FLRT3 isoform X1

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939311.2 True 3300 mRNA 0.47 3 28610623 28620025

Neighbor

gene id symbol gene type direction distance location
ephx5 ephx1,LOC108426104 coding downstream 89794 28515778 ~ 28520829 (-)
LOC113542138 NA coding downstream 105346 28504100 ~ 28505277 (-)
LOC113541930 NA coding downstream 109225 28499606 ~ 28501398 (-)
LOC113542015 NA coding downstream 114021 28494642 ~ 28496602 (-)
LOC113542013 NA coding downstream 124864 28468956 ~ 28485759 (-)
trnae-cuc_11 NA coding upstream 581907 29201932 ~ 29202003 (-)
LOC113541985 NA coding upstream 1062520 29682545 ~ 29684864 (-)
zfyve21 zfyve21,LOC106610961 coding upstream 1066705 29686730 ~ 29695063 (-)
dact2 dact2 coding upstream 1153360 29773385 ~ 29779069 (-)
eif3s6ip eif3l,eif3s6ip,LOC106576896,LOC107676390,LOC107679167 coding upstream 1162238 29782263 ~ 29788784 (-)
G54327 NA non-coding downstream 112735 28496771 ~ 28497888 (-)
G54324 NA non-coding downstream 125378 28484982 ~ 28485245 (-)
G54320 NA non-coding downstream 139525 28470891 ~ 28471098 (-)
G54273 NA non-coding downstream 181283 28427453 ~ 28429340 (-)
G54306 NA non-coding downstream 243907 28366303 ~ 28366716 (-)
LOC117596864 NA non-coding upstream 383255 29003280 ~ 29008803 (-)
LOC117596831 NA non-coding upstream 457285 29077310 ~ 29081966 (-)
G54775 NA non-coding upstream 513855 29133880 ~ 29135669 (-)
G54855 NA non-coding upstream 642735 29262760 ~ 29263429 (-)
LOC113542069 NA non-coding upstream 649071 29269096 ~ 29270020 (-)
G54269 NA other downstream 175212 28433220 ~ 28435411 (-)
zgc:163080 tmem14a other downstream 1069292 27537769 ~ 27541331 (-)
dst dst other downstream 1414668 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2700504 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3874735 24661985 ~ 24735888 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1259270 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1491806 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1532883 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1578300 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1720374 30340399 ~ 30344538 (-)

Expression


Co-expression Network