ephx5 (ephx1,LOC108426104)


Basic Information

Item Value
gene id ephx5
gene name ephx1,LOC108426104
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28515778 ~ 28520829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939312.2
GAATCATAATGCCCAACATTAGAAGATAAATTGCGGTCATGTACATATACTTCAGTGTATATACTTCAACTTTGACTGACCCGACCGACACCGACACTGCATTGCAGATTGATATTTCTGGctctaaaacatttatttagtgaTGCAACAAAATTTTAAGAAATCAAGGCCTGTTATATAACACTCAACGTTAAGGACTTTCGACCTTTTTCAAATCCTATTGCAACTCCTCCCTCATTACTACATTCCCAACCGACAAGATAAGGAAGAGTTCTCTCTAATACACGCGTATTCCAACAGCAACGGTGGCTGAGAGGAAAATGATGCAGGCTATCGAAAATATTCAACAGGCCATCTCTAGCCTTGACTATCAGCAACGTTATATCTTGGCCATCACTTCTGCTGGAATTGGAGGTCTTTTATTCTACCTAGCATGGAGGGAAAAGCCAAAGAAGATCCCAGTTGGAGATGGATGGTGGAGGGTTGGAGAAAAGCCCCTAACAGAGGACAGAACTATAAGGCCATTTGTTGTGGAGACATCAGAAGAAATGATAGAGGATCTTTACCAGCGCATTGACCAGACTCGGTACACAGACTGTTTGCAAGACTGTGGATTTCAGTATGGCTTTAACTCCACCTATCTCCAAAAAGTCGCTTCATACTGGAGGCATGAATTTAACTGGGAGAAACAGGTGAAGGTGCTCAACAAGTACCCCCACTTCAAAACTAACATTGAGGGTATAGATGTGCATTTCATTCACGTGAAGCCCGTCCAGCATGTTGGCCAGAAAGTTCTTCCTCTCATGATGGTGCACGGCTGGCCTGGTTCCTTCTTTGAGTTCTACAGGATCTTGCCCATGCTCACTAGGACTGAGGAAGATGTTGTCTTTGAGGTCATCTGCCCCTCCATCCCAGGCTATGGGTACTCTGAAGCCCCACATGTACAGGGATTTAATACCATGGATGCTGCCCGTGTTTTCCACAAGCTGATGGAGAGACTGGAGTTCAGTGAGTATTACCTTCAAGGAGGAGACTGGGGAGCACTAATCACCATCAACATGGCCCAGATGAAACCTGAGTGCGTTAAGGGCTTGCATCTTAACATGATCAATGCCAGAGCAGGAAGCACTGTGACCATCCTGTCTCTCATCATTGGCCGTTACCTGCCCTTCCTGGTAGGCTTCACCAGAGAAGATGTCCGCCGCCTCTATCCTTACATGCAAAAGAACGTGTATGAAATACTGAAAGAATCTGGTTACATGCACATCCAAGCTACCAAACCTGATACTGCAGGCTGTGCGTTGAATGATTCTCCAGTTGGTTTGGCTGCCTATATCTTGGAGAAGTTCAGCACCTGGACCGATAATAAGAACAGGGACCTTCAGGATGGAGGATTAGAGAGGAAGTTCAGTCTGGATGagctcctcaccaacatcatgATCTACTGGACTACAGGCTCCATCATTCCATCAATGCGCTTCTACAAAGAGAATATGGGCAAAAACTTTCTTCAAAGAGTGGACAATGTAACAAAAGTTTACGTACCGACTGGACTGGCAGCATTTCCCCATGAGTTGATTCATTGTCCCTGGGTCTGGGCCAGCTCCAGGTTCAGAGATATTCGCTCTTACTCCTACATGCCCAGAGGGGGGCACTTCGCAGCCTTTGAGGAACCAGAACTGCTCGCTCAAGACTTCTTGCAATTTGTGAAGAAAGTAGAGAGCAAGAAGGCtaaataattgaatgaatgcAACTTGCACTGCTAAGTATAGGGgagaatatatgaataaaaaaccTCACCTTTATACAAAGTATTTGAACAACTTTACCCAAAAATTATCTGGCAATGatttagtctgtttttttttttgttgttaatttaAGTGGAAAATTACTACTAAATTCATGTTGGCAAGCTGAAAAAGAATTATATTCAGACAGTTTATAGTTTgtcatgaaacattttaatagAATAGTTGCAAATCTTGTCAccttgtataaaatataactacATGGTATAAAAGTAAAACTTCAGGTATTCATATAATTTAGACTTGCTCTTATGTTGATCACACAATCTGACTGTGTTCTCAATGAGATAACAgacatgttgaaaatgtattCTCTGTCATAAAAGTTAGTTGTTTCTCCATAATAAAATCGAGTTTGAATTCTGAAA

Function

symbol description
ephx1 Predicted to enable epoxide hydrolase activity. Predicted to be involved in epoxide metabolic process. Predicted to act upstream of or within aromatic compound catabolic process and response to toxic substance. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in several diseases, including Leber hereditary optic neuropathy; anemia (multiple); hematologic cancer (multiple); respiratory system disease (multiple); and toxic encephalopathy. Orthologous to human EPHX1 (epoxide hydrolase 1).

NR:

description
epoxide hydrolase 1-like

GO:

id name namespace
GO:0033961 cis-stilbene-oxide hydrolase activity molecular_function

KEGG:

id description
K01253 EPHX1; microsomal epoxide hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939312.2 True 2179 mRNA 0.42 9 28515778 28520829

Neighbor

gene id symbol gene type direction distance location
LOC113542138 NA coding downstream 10501 28504100 ~ 28505277 (-)
LOC113541930 NA coding downstream 14380 28499606 ~ 28501398 (-)
LOC113542015 NA coding downstream 19176 28494642 ~ 28496602 (-)
LOC113542013 NA coding downstream 30019 28468956 ~ 28485759 (-)
nolc1 nolc1,LOC107717830 coding downstream 69438 28437005 ~ 28446340 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562 coding upstream 89794 28610623 ~ 28620025 (-)
trnae-cuc_11 NA coding upstream 681103 29201932 ~ 29202003 (-)
LOC113541985 NA coding upstream 1161716 29682545 ~ 29684864 (-)
zfyve21 zfyve21,LOC106610961 coding upstream 1165901 29686730 ~ 29695063 (-)
dact2 dact2 coding upstream 1252556 29773385 ~ 29779069 (-)
G54327 NA non-coding downstream 17890 28496771 ~ 28497888 (-)
G54324 NA non-coding downstream 30533 28484982 ~ 28485245 (-)
G54320 NA non-coding downstream 44680 28470891 ~ 28471098 (-)
G54273 NA non-coding downstream 86438 28427453 ~ 28429340 (-)
G54306 NA non-coding downstream 149062 28366303 ~ 28366716 (-)
LOC117596864 NA non-coding upstream 482451 29003280 ~ 29008803 (-)
LOC117596831 NA non-coding upstream 556481 29077310 ~ 29081966 (-)
G54775 NA non-coding upstream 613051 29133880 ~ 29135669 (-)
G54855 NA non-coding upstream 741931 29262760 ~ 29263429 (-)
LOC113542069 NA non-coding upstream 748267 29269096 ~ 29270020 (-)
G54269 NA other downstream 80367 28433220 ~ 28435411 (-)
zgc:163080 tmem14a other downstream 974447 27537769 ~ 27541331 (-)
dst dst other downstream 1319823 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2605659 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3779890 24661985 ~ 24735888 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1358466 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1591002 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1632079 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1677496 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1819570 30340399 ~ 30344538 (-)

Expression


Co-expression Network