vrk2 (vrk2)


Basic Information

Item Value
gene id vrk2
gene name vrk2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14056142 ~ 14068978 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939319.2
CTTAACTTTCAGGAAGTTAAAGTATCTGCTTACTTAGGTGTCAGACAGAAaatatgagaggaaaaaaaaaaacttgttccAATCTTTAGCATTCGCTTATATTCGTAAGTTAACTTTGTCTAACATAAATGCCTTGTTCAGAATTTAGCTCTGTGCCAAAATCATCTAACTATCTAATTGTTAGCTTAGCTAGCAAGCCTGATTAGCCTGGCTAGAGTCCTAACTGCCAGCAGTTTCGGTTTCATTCTTAGTTTGGTCAGTTTTGATTTCTGTGTTGGGTTAGTGAACCTTTGGAGTGGAAAATCCCTAAATCATTATGTTCTAGCTTTGCTGTATTAGTTAATACTACGCGTAAATATAGCTTGCTGACATCAATGGCTCCTAAGAAAAAAGCATTGCCTTGTCCTCTGCCTGAAGGATGGAtcctgacagacacagagaagagAAAGTGGCGTCTCGGCAAAATCATTGGAAAAGGAGGCTTCGGACTCATTTACCTGGCTTCAGACCATGTGGAATCACCTGTGACAGAGGATACTAATTTTGTGATTAAAGTTGAATATCATGAAAATGGACCTCTGTTCTCAGAGCTGAAGTTTTATCAAAGAGCAGCAAAACCTGAAAGCAtcAACAAATGGAAGAGAGACAAACGGCTTGATTTTTTGGGGATCCCAACCTACTGGGGCTCTGGACTCTCTGAACATAATGGAACCAGGTACAGGTTCATGGTGATAGACCGTCTGGGCATTGACCTGCAGAAGGTGTTTGTGGAAAATGCTGAACAGCTGAAGAAGCAGACAGTGTTGCATTTGGGTTGCCTCATGGTGGACGTCCTGGAATATATTCATGACAACGAATACGTCCATGCTGACATTAAGGCTGCCAATCTCTTACTGGGCCGCAGAGACCCAGGCAATGTGTACTTGGCTGACTATGGACTGTCATACAGATACTGTCCTAACGGAGAGCATAAAGACTACAAAGAGAATCCAAAGAAAGGACACAATGGCACGATTGAGTATACAAGCATTGATGCTCACAGAGGTGTAGCCCCATCCAGACGAGGGGACCTGGAGGTGCTGGGCTACTGCCTGCTCCACTGGCAGTGTGGAACTCTCCCCTGGCTGTCAGTGCTCAGGAATCCAGTACAGGTCCAGGAGGCCAAGGCCAAGCTCATGGATAACCTGCCAGACTCAGTGATCCAAATGTCCACCTCTGGTATCAGTCTAGCTGAGGTAGCCCATTTCCTGCTTGCTGTGAGGACGTTGGGCTACAAAGAAAAACCAGACTACGATGCTCTAAGGAAGGTACTATCACATGTCAGGCCCCGAGGCCCACTGGACCTCTCCAGACCGAGAGCAGCAGAGTCATCCAGGCCAGCGGCAAACAGGGCCCAGCCTGCAGTGAGATCAACTAAACCAAAGCCTGCAACTCATGGTGAAGACCTCACTAAACTTCACTACAGAACCAAAGAGAAAGCAAAGACAGAAGAACAGCCTTACAAGGTCAATTCTGCAGCCTACACACGTGCGAGGTCTAGGCGTGTGGCCATTGACCATGATGAAGACCAGGAAGAAGAATATGATCCTTTGCCACCAAGATTCCACCCCAAAACACGAGAAGGCACAAAGCAAAGGCAAAGACTTGAACAATTGGCTCCAGTATTTGGAATGAGGAGAAGAGATGAGGATGGTCTGCAAATGCTGAAACAGCACCAGGATTTCAGCCCCGATGTCACTGACCACTGGGGAAGAAATGACCACTTGTGGAAGGACTACTGCACAAGAACCAGCGACGGGGAGGACTACTGGGACAAACCAAAATATAACTGCTGGGAGGAAATTGATTATAATGGACATCAGTTGAATGCTGATGTGCACAGTGAATACTACTCGCCACACAGCAACAGGAACGACAGTCAGAACTCCGAAGACAAGCCTTTTATTCAGTGGAGCTGTAAAATTTATGCATGCATCATTACTGTTGCACTCTTCCTTTTTCTGGTTGCTTTTACTGTCTTTTGAACACATGGTGTTTGGTTTTCATATTCCAGTATTAAGAACGAATTTCTTGTCCTTCTGAAACACAGCAGCCATTTTACAGAGTGGTCACGGTTTTTGTATGGCCATTTTCACTGTGATGGGCTGGGAAAAAAACGAAGTGTTGAGATTAACGTCTTTTAGTAATTGTAACATGTATGAATCcatgaaaatcatttttaaataaataaagcatgctATCCTAAAA

Function

symbol description
vrk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human VRK2 (VRK serine/threonine kinase 2).

NR:

description
serine/threonine-protein kinase VRK1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939319.2 True 2247 mRNA 0.45 13 14056142 14068978

Neighbor

gene id symbol gene type direction distance location
LOC117596880 NA coding downstream 22425 13852493 ~ 14033717 (-)
papolg papolg coding downstream 484332 13556873 ~ 13571810 (-)
rel rel coding downstream 501593 13545526 ~ 13554549 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding downstream 519275 13531660 ~ 13536867 (-)
sgpl1 sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334 coding downstream 539045 13502714 ~ 13517097 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 299209 14368187 ~ 14387373 (-)
kcnq5a kcnq5,LOC107718835 coding upstream 320009 14388987 ~ 14514886 (-)
LOC113537600 rims1 coding upstream 451960 14520938 ~ 14595086 (-)
ogfrl1 ogfrl1 coding upstream 561917 14630895 ~ 14642737 (-)
smap1 smap1 coding upstream 604103 14673081 ~ 14778488 (-)
LOC113543535 NA non-coding downstream 414618 13632755 ~ 13641524 (-)
G45755 NA non-coding downstream 591403 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 742986 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 745902 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 805765 13248942 ~ 13250377 (-)
G46183 NA non-coding upstream 114790 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 220578 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 544563 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 545538 14614516 ~ 14614764 (-)
G46576 NA non-coding upstream 548675 14617653 ~ 14625970 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 620656 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1024946 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 1416540 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 1416819 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 1422724 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 112913 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 710878 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1343935 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2375718 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2910153 16979131 ~ 16982729 (-)

Expression


Co-expression Network