fancl (fancl,LOC107585345)


Basic Information

Item Value
gene id fancl
gene name fancl,LOC107585345
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14035638 ~ 14056463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939331.2
gagtgtgtgatgacgTAGCGCTGATTTGATTCCGTTTTGCGGGAAGCAGCTGCAGTAACTTTTGGTTTCACACACACTAGAGAAATAAACCTTAAACCTGTAGAATATCGGAACTGAACGATATTTCTAAGTGTGTCGGTctctgtttgcttgtttaaaGAGTACTATGTGTAAAAGTCGGAGTGGAAATGACTGAATTAGCTAGCCGGCTAGTTTAGCACTAGCAGTACAGTAGTAGtgtttagcttgctagctttCTCACAGGAGGCTGTCATACAGTGGCGCAGTATCACTTCATTCAcctggttgtttgtttgtttgtttgtttgttttacacaaTGGCTGAAAGCTTGCTTAAAGAGTGTCCTTTGTTAGTTGCGCTGGATAAAGAGAAAACTATTTACGATGGCTTTATCTCAGTACAGGAAAGAGACTTCAGGATAAGAATAACTCTGCCTCCAGACCATCAGCTGAAACAGgcaaaATTGCACTGCTGCTGGGAACTGAAACGGCTGCTGAAAAACCACCAGCACATCCTAAAACAGAGGTTACAACATTCTTCAGATCTGGTCGGGTTTATTTTGGAGCTGAGGACCGTTCTGGAAGTAGCACTGAAGAGCCAGCCAGGCTGGCAGGCCATCCCACCACCTCAGTACTATTCACAGCTCATCACAGAGATAGAGAGTTTAGGATGGGATAAGCTAATCTTCATTGACACTGACTTCCACACTCTTAAGTTGAAGGCAGAGGACTCCTTTCATCGTCAGCATGTCTTTACAGTCAAGATTAAATCAAAGTACCCAGCAGAAGCTCCAGAATGCTCCGCAGACCTGCCTGTCCCACTGGTGATTACATGGACCCCACAGAGCAATTTAGCCCACATACATAGCCAGTTCCTGCTGATTGTGGAGGCTTTGGCTGAATTCTGGGCAGTGATGGATGAGATTGATGCGCACACCTGGGTGCTGGAACCTGAAAAACCTAGCAGAGCAGACACGATGAGACGGATCGCTATTGGAAACAACGTCTCCATAAAGGTTGAGATCGACCCCAGGCACCCGAAGATGTTGCCAGAATGCTGCCTGCTTGGAGCTGAGCATGTGGTAACCCCCCTGAGGAGCAAGCTGAACGCTAACATGCATTTATGGAACCCCGACTGCAGCGTCCTGCAGAACATGAAGGATGTTATGGAGATAGAATTCCCGTCACCTGCCACCCACGAAAAATCTAGTTTTAGTGTGGAGTGCGGCATCTGCTATTCATATCGGCTGGACTCTGCCATACCAGATCAGGTGTGCAACGATCCACGCTGTGGGCAGCCTTTTCATCAGGCCTGTCTCTATGAGTGGCTGAGAGGTTTGCCCACCAGTCGCCAGAGCTTCAACATTGTGTTTGGAGAATGTCCTTACTGCAGCAAGCCCATCACAGTGAAAATGGCCATACAAAAACCGTGACCACTCTGTAAAATGGCTGCTGTGTTTCAGAAGGACAAGAAATTCGTTCTTAATACTGGAATATGAAAACCAAACACCATGTGTTCAAAAGACAGTAAAAGCAACCAGAAAAAGGAAGAGTGCAACAGTAATGATGCATGCATAAATTTTACAGCTCCACTGAATAAAAGGCTTGTCTTCGGA

Function

symbol description
fancl Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within oocyte development. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleus. Is expressed in central nervous system; eye; heart; intermediate cell mass of mesoderm; and reproductive system. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L).

NR:

description
serine/threonine-protein kinase VRK1-like

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939331.2 True 1637 mRNA 0.46 14 14035638 14056463

Neighbor

gene id symbol gene type direction distance location
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 402160 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 605378 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 630963 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 652295 13376724 ~ 13383343 (+)
pkd2l1 LOC108263119 coding upstream 669571 13359076 ~ 13366067 (+)
soul2 NA coding downstream 137371 14193834 ~ 14197074 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 232919 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 239871 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 275029 14331492 ~ 14341288 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 290134 14346597 ~ 14351235 (+)
G45875 NA non-coding upstream 139103 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 145789 13889279 ~ 13889849 (+)
LOC113545747 NA non-coding upstream 390300 13644120 ~ 13645338 (+)
G45712 NA non-coding upstream 436623 13521839 ~ 13599015 (+)
G45713 NA non-coding upstream 440813 13522906 ~ 13594825 (+)
G46175 NA non-coding downstream 126528 14182991 ~ 14183193 (+)
G46176 NA non-coding downstream 126974 14183437 ~ 14183646 (+)
G46217 NA non-coding downstream 230187 14286650 ~ 14288287 (+)
G46337 NA non-coding downstream 331566 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 561145 14617608 ~ 14626490 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 534588 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1001288 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1030315 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1098336 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 1392334 12639317 ~ 12643304 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 156906 14213369 ~ 14286542 (+)
cgas NA other downstream 304904 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 916105 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1736943 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 2014251 16070714 ~ 16075650 (+)

Expression


Co-expression Network