dnajc12 (dnajc12)


Basic Information

Item Value
gene id dnajc12
gene name dnajc12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25308306 ~ 25330202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939333.2
GCTCCGCCTCGCGTACATTTCAGCAACTGATAGCGAGACCCAGAAACTCCAAGTGTCTGATGTCGAGAGCACAGATCACTGAGGGTGCTTCCACACTCATGGAGAagataataaattgtaaaatggaaGATCTGGAAGATTATTACGGCTTGCTTGGGTGCGATGAGTCGTCAACGACTGAACAAATTATGGCAGAGTATAAAGTGAGAGCCCTGTCTTGCCACCCTGACAAACATCCGGAAAATCCTGAAGCAGCACAAGACTTTCAAAAGTTACAACAGGCCAAAGATGTTCtcacagatgagaccaaaagaagaaaatatgaTTACTGGTTGAGAAGTAGCATCACTGTTCCATTCAGGGAATGGCAGGCCTTGAGTGACACAGTTAAAATTTCAATGCATTGGGCCCTTAAAAGCAAAAAGGAGCCAATGCTAAAAGCAGCAAAAGACACACCTGAATTCCAAGCTGGTCAGTCAGAAACTCAAGTGCCAATAGAGGGGAATTCATCCGATGAAGAACTCTCttcaaGTGGTTATTGGCATCACAAATTTCGGTGTGCGGGTGATCCTCCTTCAGCCCTCTTGAAAAAGTTTAGAAATTATCAAATATGAAGAATTATAAGCTATAAACTCAATATTTGGCACTCCTATTGAAATTTGTGGTTTTGacatatataaatgaaataattttgtGAATTGTTTCATATTGTGGAATAAAGTATGGCTATTGTCCTCACTCA
>XM_026939334.2
CCCAGAAACTCCAAGTGTCTGATGTCGAGAGCACAGTAAGAGGTTTAACGAAAATTGCTAGGATCACTGAGGGTGCTTCCACACTCATGGAGAagataataaattgtaaaatggaaGATCTGGAAGATTATTACGGCTTGCTTGGGTGCGATGAGTCGTCAACGACTGAACAAATTATGGCAGAGTATAAAGTGAGAGCCCTGTCTTGCCACCCTGACAAACATCCGGAAAATCCTGAAGCAGCACAAGACTTTCAAAAGTTACAACAGGCCAAAGATGTTCtcacagatgagaccaaaagaagaaaatatgaTTACTGGTTGAGAAGTAGCATCACTGTTCCATTCAGGGAATGGCAGGCCTTGAGTGACACAGTTAAAATTTCAATGCATTGGGCCCTTAAAAGCAAAAAGGAGCCAATGCTAAAAGCAGCAAAAGACACACCTGAATTCCAAGCTGGTCAGTCAGAAACTCAAGTGCCAATAGAGGGGAATTCATCCGATGAAGAACTCTCttcaaGTGGTTATTGGCATCACAAATTTCGGTGTGCGGGTGATCCTCCTTCAGCCCTCTTGAAAAAGTTTAGAAATTATCAAATATGAAGAATTATAAGCTATAAACTCAATATTTGGCACTCCTATTGAAATTTGTGGTTTTGacatatataaatgaaataattttgtGAATTGTTTCATATTGTGGAATAAAGTATGGCTATTGTCCTCACTCA

Function

symbol description
dnajc12 Orthologous to human DNAJC12 (DnaJ heat shock protein family (Hsp40) member C12).

NR:

description
dnaJ homolog subfamily C member 12

GO: NA

KEGG:

id description
K09532 DNAJC12; DnaJ homolog subfamily C member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939333.2 True 742 mRNA 0.41 6 25308306 25330202
XM_026939334.2 False 730 mRNA 0.40 6 25308306 25330164

Neighbor

gene id symbol gene type direction distance location
LOC113542016 sipa1l2 coding downstream 217484 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 991878 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1440776 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 1467446 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 1557545 23727152 ~ 23750761 (-)
msh6 msh6 coding upstream 164474 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 355482 25685684 ~ 25697851 (-)
mertka mertk coding upstream 419851 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 442685 25772887 ~ 25791400 (-)
anapc1 anapc1 coding upstream 592828 25923030 ~ 25966974 (-)
G52373 gpatch11 non-coding downstream 118810 25185835 ~ 25189496 (-)
G52310 NA non-coding downstream 298003 25002120 ~ 25010303 (-)
G52304 NA non-coding downstream 384454 24920672 ~ 24923852 (-)
G52300 NA non-coding downstream 426350 24879497 ~ 24881956 (-)
G52283 NA non-coding downstream 519211 24788891 ~ 24789095 (-)
G52438 NA non-coding upstream 4680 25334882 ~ 25335127 (-)
G52451 NA non-coding upstream 28419 25358621 ~ 25360911 (-)
G52452 NA non-coding upstream 31319 25361521 ~ 25362463 (-)
G52453 NA non-coding upstream 32786 25362988 ~ 25364044 (-)
G52474 NA non-coding upstream 119468 25449670 ~ 25450393 (-)
herc4 herc4,LOC107689351 other downstream 572418 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 656459 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1175823 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1268206 24016896 ~ 24040100 (-)
G51576 NA other downstream 1854089 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 579816 25910018 ~ 25910119 (-)
dst dst other upstream 1727695 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2207567 27537769 ~ 27541331 (-)
G54269 NA other upstream 3103018 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4549093 29879295 ~ 30111161 (-)

Expression


Co-expression Network