cacul1 (cacul1)


Basic Information

Item Value
gene id cacul1
gene name cacul1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24416490 ~ 24440455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939335.2
GTGTTGCAGCATACTTCACGGCGGCGGAGTAGGATTTCTTAAACATATAGTTTAACATTTGATATGAAAACgtaaaatgtcatttctgcAGCTCGCCAGTAAAGGTGGGGTTGGGGTTTTAGAGATGCACGATGACCACAATCACAATTATCGTGAAAACCATggaaatgtatattatttaaacTGTAGCTCACCGATGCGGAGTGAAGCCAGTTGTATTCCAGccactgtgggtgtgtgggATTGTGCCGAAACTGCCACACACAACGATTCCGCTTCAGACTGCGAAGCTGATTGTTGTGGTCCATCTAAAGCGAGGAGCGTGACTTCTAATCCCTCTGAATTTATGATGAATTCAATGACAGCTGAGGACTACAGAGAAACCTACTGGCCGAGGCTGGAAAAAGCAGTTGAACAGCTGCTGACTCAAAGCCCAGTGAAATACACTTCTATCTCCTATGAACAGATTTACAGTCAtgtttataagtgtgtgtgccAGCAATACTCAGACCATCTCTACAGTGACTTGATATGGAAGATAACATCTCACTTACAGCAAGTGTGCTTAGAATTGCAAGACAGCCGACCTGAAAGTTTTGTTGAAAACTTCAATCTTGCTTTCACTCAATACATGGCTGCAATTGAGTGCATCATTCCTTTGTTCATTTATATGaacAAATTCTATATTGAAACTCAGCTGAACAGAGACTTGAAGGATGACCTCATGGACCTTTTCTCAGCTCATGTTGCAGAGAAACATATTAGTATGTTAATATCTCTTCTAAAGAAAGCTGAGGCCATGCCATTTCAAGTTAAACCATCAACTATGGCAAGTGTGGTAAAAGGCCTTTACTCTCTGCGACCAGACTGGGCTCAGCTAGCCCCTGCATTGTTTTCTAGATTTATTCCCCAAATTCACCCTCCTGTTTTGGAGTCTGATTTGCTGCGTTATGCATCTCAAGACCGGAAATTGCAAATGGAGCTTTCACTAAAAGGTTTTTCCAGGTGTGACCAGTCACGTAAAAGAGCATGTGAAGAATCCTGAAAAACCTGCTGGAAAACATGAAATAATACCCCACACAAGAAAGCTTCCATACTACAGATCAGAGACATAAGGACTAGACTACGTATGAACTgggaataattaaaaataaaaaaaaattttttttacaaaggtgCTATCTTCTATGGAGGATAAACCATGtgctaataaaaaacaaatgaataaatgtatgaaaacaaataaatacatgtggcataaaagacaaaaaaattgcagagtaTATAACAATGCCttgataaaaaatgaataatacagaaaaagaaCATGGAATGAGAGTCAGTTTAAGCTTAAACATCTGCGGActtatttaaatacaatttttttaaacacaaaaaagtttctgttttgcagaacctttttttgtttaaaaaaattgtatttaaatattgattGCAATTTTAAATTGCAATCAATATTTACCTCACAATTAGTAATTGCTGAAACTGTGGACAGATTTATGACATAGAACCTCTTCCTGCTCTTCTGTGGCCAAGTATTAACTTCTGGAGTGGGGTAACCAGATTTTGGGTTAAAATAACCTGGTAACCATAATGATGCCTCAGAGCTGCAAAATGATCCACCAACACATAATGATCTAAACTAAGGGtgaaatttgtgtttaaatgaaaaatctgaatttgaatgttatcatttatattttgtatctTATTGTATCAAATTGAATTTCATGGAATGCAAGAAAGTAATCTTAGGCTCTGAAAATGAATTTCATGCTTAAGGGTGTGTAATTAAACATTTGAAATTCAACCTGAA
>XM_026939336.2
GTGTTGCAGCATACTTCACGGCGGCGGAGTAGGATTTCTTAAACATATAGTTTAACATTTGATATGAAAACgtaaaatgtcatttctgcAGCTCGCCAGTAAAGGTGGGGTTGGGGTTTTAGAGATGCACGATGACCACAATCACAATTATCGTGAAAACCATggaaatgtatattatttaaacTGTAGCTCACCGATGCGGAGTGAAGCCAGTTGTATTCCAGccactgtgggtgtgtgggATTGTGCCGAAACTGCCACACACAACGATTCCGCTTCAGACTGCGAAGCTGATTGTTGTGGTCCATCTAAAGCGAGGAGCGTGACTTCTAATCCCTCTGAATTTATGATGAATTCAATGACAGCTGAGGACTACAGAGAAACCTACTGGCCGAGGCTGGAAAAAGCAGTTGAACAGCTGCTGACTCAAAGCCCAGTGAAATACACTTCTATCTCCTATGAACAGATTTACAGTCAtgtttataagtgtgtgtgccAGCAATACTCAGACCATCTCTACAGTGACTTGATATGGAAGATAACATCTCACTTACAGCAAGTGTGCTTAGAATTGCAAGACAGCCGACCTGAAAGTTTTGTTGAAAACTTCAATCTTGCTTTCACTCAATACATGGCTGCAATTGAGTGCATCATTCCTTTGTTCATTTATATGaacAAATTCTATATTGAAACTCAGCTGAACAGAGACTTGAAGGATGACCTCATGGACCTTTTCTCAGCTCATGTTGCAGAGAAACATATTACTCTTCTAAAGAAAGCTGAGGCCATGCCATTTCAAGTTAAACCATCAACTATGGCAAGTGTGGTAAAAGGCCTTTACTCTCTGCGACCAGACTGGGCTCAGCTAGCCCCTGCATTGTTTTCTAGATTTATTCCCCAAATTCACCCTCCTGTTTTGGAGTCTGATTTGCTGCGTTATGCATCTCAAGACCGGAAATTGCAAATGGAGCTTTCACTAAAAGGTTTTTCCAGGTGTGACCAGTCACGTAAAAGAGCATGTGAAGAATCCTGAAAAACCTGCTGGAAAACATGAAATAATACCCCACACAAGAAAGCTTCCATACTACAGATCAGAGACATAAGGACTAGACTACGTATGAACTgggaataattaaaaataaaaaaaaattttttttacaaaggtgCTATCTTCTATGGAGGATAAACCATGtgctaataaaaaacaaatgaataaatgtatgaaaacaaataaatacatgtggcataaaagacaaaaaaattgcagagtaTATAACAATGCCttgataaaaaatgaataatacagaaaaagaaCATGGAATGAGAGTCAGTTTAAGCTTAAACATCTGCGGActtatttaaatacaatttttttaaacacaaaaaagtttctgttttgcagaacctttttttgtttaaaaaaattgtatttaaatattgattGCAATTTTAAATTGCAATCAATATTTACCTCACAATTAGTAATTGCTGAAACTGTGGACAGATTTATGACATAGAACCTCTTCCTGCTCTTCTGTGGCCAAGTATTAACTTCTGGAGTGGGGTAACCAGATTTTGGGTTAAAATAACCTGGTAACCATAATGATGCCTCAGAGCTGCAAAATGATCCACCAACACATAATGATCTAAACTAAGGGtgaaatttgtgtttaaatgaaaaatctgaatttgaatgttatcatttatattttgtatctTATTGTATCAAATTGAATTTCATGGAATGCAAGAAAGTAATCTTAGGCTCTGAAAATGAATTTCATGCTTAAGGGTGTGTAATTAAACATTTGAAATTCAACCTGAA
>XM_026939337.2
TAGGATTTCTTAAACATATAGTTTAACATTTGATATGAAAACgtaaaatgtcatttctgcAGCTCGCCAGTAAAGGTGGGGTTGGGGTTTTAGAGATGCACGATGACCACAATCACAATTATCGTGAAAACCATggaaatgtatattatttaaacTGTAGCTCACCGATGCGGAGTGAAGCCAGTTGTATTCCAGccactgtgggtgtgtgggATTGTGCCGAAACTGCCACACACAACGATTCCGCTTCAGACTGCGAAGCTGATTGTTGTGGTCCATCTAAAGCGAGGAGCGTGACTTCTAATCCCTCTGAATTTAtcCCTCCAACTGCTTGGACGCCATGTTGTGAATGGAGCGTGATCATATGACCACATGACACAAACATCCAGTGATGAATTCAATGACAGCTGAGGACTACAGAGAAACCTACTGGCCGAGGCTGGAAAAAGCAGTTGAACAGCTGCTGACTCAAAGCCCAGTGAAATACACTTCTATCTCCTATGAACAGATTTACAGTCAtgtttataagtgtgtgtgccAGCAATACTCAGACCATCTCTACAGTGACTTGATATGGAAGATAACATCTCACTTACAGCAAGTGTGCTTAGAATTGCAAGACAGCCGACCTGAAAGTTTTGTTGAAAACTTCAATCTTGCTTTCACTCAATACATGGCTGCAATTGAGTGCATCATTCCTTTGTTCATTTATATGaacAAATTCTATATTGAAACTCAGCTGAACAGAGACTTGAAGGATGACCTCATGGACCTTTTCTCAGCTCATGTTGCAGAGAAACATATTAGTATGTTAATATCTCTTCTAAAGAAAGCTGAGGCCATGCCATTTCAAGTTAAACCATCAACTATGGCAAGTGTGGTAAAAGGCCTTTACTCTCTGCGACCAGACTGGGCTCAGCTAGCCCCTGCATTGTTTTCTAGATTTATTCCCCAAATTCACCCTCCTGTTTTGGAGTCTGATTTGCTGCGTTATGCATCTCAAGACCGGAAATTGCAAATGGAGCTTTCACTAAAAGGTTTTTCCAGGTGTGACCAGTCACGTAAAAGAGCATGTGAAGAATCCTGAAAAACCTGCTGGAAAACATGAAATAATACCCCACACAAGAAAGCTTCCATACTACAGATCAGAGACATAAGGACTAGACTACGTATGAACTgggaataattaaaaataaaaaaaaattttttttacaaaggtgCTATCTTCTATGGAGGATAAACCATGtgctaataaaaaacaaatgaataaatgtatgaaaacaaataaatacatgtggcataaaagacaaaaaaattgcagagtaTATAACAATGCCttgataaaaaatgaataatacagaaaaagaaCATGGAATGAGAGTCAGTTTAAGCTTAAACATCTGCGGActtatttaaatacaatttttttaaacacaaaaaagtttctgttttgcagaacctttttttgtttaaaaaaattgtatttaaatattgattGCAATTTTAAATTGCAATCAATATTTACCTCACAATTAGTAATTGCTGAAACTGTGGACAGATTTATGACATAGAACCTCTTCCTGCTCTTCTGTGGCCAAGTATTAACTTCTGGAGTGGGGTAACCAGATTTTGGGTTAAAATAACCTGGTAACCATAATGATGCCTCAGAGCTGCAAAATGATCCACCAACACATAATGATCTAAACTAAGGGtgaaatttgtgtttaaatgaaaaatctgaatttgaatgttatcatttatattttgtatctTATTGTATCAAATTGAATTTCATGGAATGCAAGAAAGTAATCTTAGGCTCTGAAAATGAATTTCATGCTTAAGGGTGTGTAATTAAACATTTGAAATTCAACCTGAA
>XM_026939338.2
TAGGATTTCTTAAACATATAGTTTAACATTTGATATGAAAACgtaaaatgtcatttctgcAGCTCGCCAGTAAAGGTGGGGTTGGGGTTTTAGAGATGCACGATGACCACAATCACAATTATCGTGAAAACCATggaaatgtatattatttaaacTGTAGCTCACCGATGCGGAGTGAAGCCAGTTGTATTCCAGccactgtgggtgtgtgggATTGTGCCGAAACTGCCACACACAACGATTCCGCTTCAGACTGCGAAGCTGATTGTTGTGGTCCATCTAAAGCGAGGAGCGTGACTTCTAATCCCTCTGAATTTATGAAATAAGAGCCAGtgtctcttctctactccagtcCCTCCAACTGCTTGGACGCCATGTTGTGAATGGAGCGTGATCATATGACCACATGACACAAACATCCAGTGATGAATTCAATGACAGCTGAGGACTACAGAGAAACCTACTGGCCGAGGCTGGAAAAAGCAGTTGAACAGCTGCTGACTCAAAGCCCAGTGAAATACACTTCTATCTCCTATGAACAGATTTACAGTCAtgtttataagtgtgtgtgccAGCAATACTCAGACCATCTCTACAGTGACTTGATATGGAAGATAACATCTCACTTACAGCAAGTGTGCTTAGAATTGCAAGACAGCCGACCTGAAAGTTTTGTTGAAAACTTCAATCTTGCTTTCACTCAATACATGGCTGCAATTGAGTGCATCATTCCTTTGTTCATTTATATGaacAAATTCTATATTGAAACTCAGCTGAACAGAGACTTGAAGGATGACCTCATGGACCTTTTCTCAGCTCATGTTGCAGAGAAACATATTAGTATGTTAATATCTCTTCTAAAGAAAGCTGAGGCCATGCCATTTCAAGTTAAACCATCAACTATGGCAAGTGTGGTAAAAGGCCTTTACTCTCTGCGACCAGACTGGGCTCAGCTAGCCCCTGCATTGTTTTCTAGATTTATTCCCCAAATTCACCCTCCTGTTTTGGAGTCTGATTTGCTGCGTTATGCATCTCAAGACCGGAAATTGCAAATGGAGCTTTCACTAAAAGGTTTTTCCAGGTGTGACCAGTCACGTAAAAGAGCATGTGAAGAATCCTGAAAAACCTGCTGGAAAACATGAAATAATACCCCACACAAGAAAGCTTCCATACTACAGATCAGAGACATAAGGACTAGACTACGTATGAACTgggaataattaaaaataaaaaaaaattttttttacaaaggtgCTATCTTCTATGGAGGATAAACCATGtgctaataaaaaacaaatgaataaatgtatgaaaacaaataaatacatgtggcataaaagacaaaaaaattgcagagtaTATAACAATGCCttgataaaaaatgaataatacagaaaaagaaCATGGAATGAGAGTCAGTTTAAGCTTAAACATCTGCGGActtatttaaatacaatttttttaaacacaaaaaagtttctgttttgcagaacctttttttgtttaaaaaaattgtatttaaatattgattGCAATTTTAAATTGCAATCAATATTTACCTCACAATTAGTAATTGCTGAAACTGTGGACAGATTTATGACATAGAACCTCTTCCTGCTCTTCTGTGGCCAAGTATTAACTTCTGGAGTGGGGTAACCAGATTTTGGGTTAAAATAACCTGGTAACCATAATGATGCCTCAGAGCTGCAAAATGATCCACCAACACATAATGATCTAAACTAAGGGtgaaatttgtgtttaaatgaaaaatctgaatttgaatgttatcatttatattttgtatctTATTGTATCAAATTGAATTTCATGGAATGCAAGAAAGTAATCTTAGGCTCTGAAAATGAATTTCATGCTTAAGGGTGTGTAATTAAACATTTGAAATTCAACCTGAA

Function

symbol description
cacul1 Predicted to enable ubiquitin protein ligase binding activity. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Orthologous to human CACUL1 (CDK2 associated cullin domain 1).

NR:

description
PREDICTED: CDK2-associated and cullin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939335.2 False 1837 mRNA 0.37 8 24416490 24440455
XM_026939336.2 False 1825 mRNA 0.37 8 24416490 24440455
XM_026939337.2 False 1879 mRNA 0.37 9 24416519 24440455
XM_026939338.2 True 1913 mRNA 0.37 9 24416519 24440455

Neighbor

gene id symbol gene type direction distance location
ggps1 ggps1,LOC107728322 coding upstream 71122 24316703 ~ 24345368 (+)
LOC117596572 NA coding upstream 279643 24133623 ~ 24136847 (+)
lrrfip2 lrrfip2,LOC107679173 coding upstream 417090 23868151 ~ 23999400 (+)
si:dkey-78p8.1 NA coding upstream 965499 23428017 ~ 23450991 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding upstream 1140174 23220121 ~ 23276316 (+)
gpatch11 gpatch11 coding downstream 742698 25183153 ~ 25191848 (+)
tsnax tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 coding downstream 764684 25205139 ~ 25239169 (+)
LOC113541878 NA coding downstream 916934 25357389 ~ 25364017 (+)
sirt1 sirt1 coding downstream 924660 25365115 ~ 25386138 (+)
LOC113542106 NA coding downstream 1010083 25450538 ~ 25459746 (+)
G51980 NA non-coding upstream 13146 24402708 ~ 24403344 (+)
G51977 NA non-coding upstream 54421 24358660 ~ 24362069 (+)
G51978 NA non-coding upstream 68678 24347560 ~ 24347812 (+)
G51957 NA non-coding upstream 200905 24214840 ~ 24215585 (+)
G51958 arid4b non-coding upstream 206186 24197021 ~ 24210304 (+)
LOC117596845 LOC107716903 non-coding downstream 214445 24654900 ~ 24659092 (+)
G52161 herc4 non-coding downstream 221006 24661461 ~ 24662405 (+)
G52163 NA non-coding downstream 248783 24689238 ~ 24696897 (+)
G52175 NA non-coding downstream 296142 24736597 ~ 24737982 (+)
G52179 NA non-coding downstream 312711 24753166 ~ 24753398 (+)
b3galnt2 b3galnt2 other upstream 14036 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 358592 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 581639 23793680 ~ 23834851 (+)
G51749 NA other upstream 719196 23697032 ~ 23697294 (+)
G51562 NA other upstream 960941 23454428 ~ 23455549 (+)
golga4 golga4 other downstream 1121947 25562402 ~ 25594936 (+)
acoxl acoxl other downstream 1361517 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 1410145 25850600 ~ 25864346 (+)
G53328 NA other downstream 2545523 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 2757454 27197909 ~ 27207245 (+)

Expression


Co-expression Network