gfral (gfral)


Basic Information

Item Value
gene id gfral
gene name gfral
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26925234 ~ 26933750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939387.2
TACCAGCCTGCAAACTACACTGAAAATCTCAGCGactttatacattaatatacattaaatgtagttttaaaaaatttctacTCAAACTTTCAAACTTTTCTGCACTCACACATGAGAGAAAACAGACCTAATGGACTAAACATTGCTCTCCATGGAGGTGACAGGTCGTGAAttacaggaggaaaaaaacaaaggCTATGGCAAGATCAGttcctcaaaacagcaaaaacaagcaCATCACGTGAACAGGTAAATATAGCGTGCGCTAGCTTAAAAACTTGCTGGGACTGACGTCATGTCCGGTTGCTGGCATTGCCATGGGGATATACACCGTGCAGTCCGCGAGCGCAGGTGTTGCTCCAGCAGCTGAACTTCAGCCGGCAGTCAGGCGCTCAGAGGAGAACATGAAGACAGCTCTGGTTATCGGGATGTGCCTGGTTTTGCAGACAGTTTGCACCATGATATCTACACGCTGCTTGTCACAGATGCAGCCTTGTATTTCTCCAGACCTGTGCAGAAGCAAACAGACTCttctgagaaatgtttgtgctTCTGAAGACAGCAGCTGTCAAATGCAAAGTTCTGAGGGCTGTAATGTGACCATTCAGGCAATATTAGCTCACTCAAGAGAGTGTATATGCACTGATGAAAATCCATGCAACATTCTACAACTACTGGCTTCCTTCTGCCATTCCCACTTAGACGTTGAGCCCTTGCATGCACCTGACAAATCAAGATTGGCAACTCAGCAGGCGAACCATCAAGCCAGTGGTCTACATCCTCATTCAGATCATCACCTAAACTTACCAGTTCATGAGAAAACCCTAAAGGAGGAATGGAAAAAAAGTAGACTATTAACATATGTACCGGCTCCAAACATTTCCTGCGTTCAGGAGATGATGCTGTGCATCCAGGATGAAGTATGTAATCACCAGCTGGTGCCGTTTGTCCAGTCCTGTTCTACTCCTCAGTGTGAGGAGAAGCTTTGCAGGCTGGCAGCAAGAAAATTTTATTCTAGCCTGCCTGAAAATGTGGCTGAGATGCTGGTATTCTGCCAGTGTGTGACAGATGACCAGGACTGCCAACATTTTCAGACCATGCTCAATTCCAACTCCTGCAAACAAGACAAGATAGCGCAGTggaactgcctggagatgctggacAACTGCACTGGAGAGAAGATGTGCAGGAAGACCTTTGAGGCATTCTTGTCCAAATGTTTTGGCTCCGAGGATGTTTCATTTAGTGGATATTCAAACACAGACCTGCTGCATGTCATAGATCTGAACTTTTTTGTCAGTGGAAACAAAGAGTGCAGACTGGCCTTTGTAGCTACAATGGGATCTGTGCTTCGGAGTCCGTGCACCTGTCATGGACTGGATCATCACAATCTTTACAGGTGCAATGTGCTGCAACAAGCCATTCATAACAGATCCTATTTCAGACCTCAAGAACCTAAGCAAAATATCTCATCTACAAAgtcaaaagtaaataaatcacagcAAGAGAATTCATGGCTAAATGATCAATTATTGTACATTGTGGTGTCTGtttgtgtggtggtggtggtgatcaTTGCAGTCGCCATTGCCATTGTTATGCATAAACTGGGgaAAAAGCACAGCTTGTCCAAGAACccagattcaagattcaaaccCCCAGAGGATTCCACAAAATCACTTgttctgtaatttaaatcatgtttaacTCATGGATGTTTTGTACAAAGCATATAACGTGATTGTTTTATCTGATAGCCTATGTACAAGTTCAgattattttatactatatatgatAACATTTAGATTTATCAAATTAAGTTTCAATTACTGATGTGAAtgcacacacagttgtatgACACTGACCATTGTTTTGTTACTGTGCTTTTGTTATAGAATTAATATtgctttattaatattattttatatgaccCATTACCATTTAAATGCtctttacatatacatatatttaaatgcTCTTTAAATAATAGTGCTCACAGCAGTCACGTATAACTATCACATATCTGTGATGGCCTAGGAACACCCAGTGAAAGACACCCCatctatttttacatttgtaatcTAACTTACTTATGggaaaaataacattactgCAAAAGTAATGGGAAAGTAGTGATTAttagcatcatccacatcacctgaggtaaaagcaTGTCATGACATTGAAGCACTCTTCACTCGAAAGTACTACCAGAAAAACTCAGTTTTGGTCAAAACCACACTTTTTGGTTGTTTTCCAGTGTTCAGCCATAGCAACACCTGATGGGTTTTCTGAGGCCCCCTCACATATAGCACTgttcaataaaatgtaaaagtaaaatgtaaatacaatcccccagaaacactggaaaacactgaataaaagaaaggatttttcatgcataaattataacaaatagcaatttgcagaacataactttattcaactcttGAACTTACAGTTCATCAGCCTCAgctacttcactcaagtgcattaTTGGTCTTATCCAGATGCCCTGTGGAACTTTATGGAAAACTTGTGACTGAGTGACTAAAGTGACTGAGTAAGCTAGGgaactatctttcaaaacaatgTCTTTCCAAATCAGGGAAGTGTTTATGGTTTGTTATGGTTGTTTATGGTTGACAATAATAGCCACCTAATAACGTCATTAGATTTAACttagtttttggttttgctacgttccagaaagatcagaagaGTTCTCTGGACACACTGTCAGAATACTATGAAGTGAGaacacagtgctgctgtgagtctagatggattatttttttttttttttttcattataatgcccatATGATTTTCCAGGAAAATTTTCTTTCAATAATGATCTAGAATGTTCATTTAAGAACTa

Function

symbol description
gfral Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRAL (GDNF family receptor alpha like).

NR:

description
GDNF family receptor alpha-like

GO: NA

KEGG:

id description
K24156 GFRAL; GDNF family receptor alpha-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939387.2 True 2881 mRNA 0.40 12 26925234 26933750

Neighbor

gene id symbol gene type direction distance location
hcrtr2 hcrtr2 coding upstream 1983 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 38155 26873228 ~ 26887079 (+)
mlip mlip coding upstream 60097 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 115726 26803195 ~ 26809508 (+)
lrrc1 lrrc1 coding upstream 126722 26755660 ~ 26798512 (+)
bag2 bag2 coding downstream 273578 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 311201 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 340766 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 380783 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 409171 27342921 ~ 27347922 (+)
G53172 NA non-coding upstream 125716 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 372082 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 372512 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 372949 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 386714 26538234 ~ 26538520 (+)
G53280 NA non-coding downstream 188 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 84211 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 100099 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 122014 27055764 ~ 27056998 (+)
LOC117596898 NA non-coding downstream 125128 27058878 ~ 27068180 (+)
bcl2l11 bcl2l11 other upstream 1060888 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1078331 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1330298 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2522780 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2867336 24055154 ~ 24057898 (+)
G53328 NA other downstream 52228 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 264159 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1267285 28201035 ~ 28301823 (+)
G53692 NA other downstream 1513627 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1532338 28466088 ~ 28496606 (+)

Expression


Co-expression Network