ndufaf1 (ndufaf1,LOC107588570)


Basic Information

Item Value
gene id ndufaf1
gene name ndufaf1,LOC107588570
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32374336 ~ 32389144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939393.2
TTTTTTAATGCGACGCACCGCAATGGCGGCTCACAGCAAGATGAATGTCAGAATGTTTCTTTACAGTAATACTTGTTCTGACGTTAGAAATagcttttgcttttaatttgcaCTGAGTCGTAGCTTGTAATGTTTGTGATTCTACACAACAGTGTCACAATTCGCTTTTTTCTTGCTCTTATTTCCGGAGACATTTGGATGCTTTGAGCTCAGAGGTTATGGCTCTGTCAGGGAGGATGCTGAAAACCTCCAGCATCTTCCAGAGGCGTCTCTTTGAGCCGCACATCGCTGGTCCTGTCTCCCTGAGCATCAGGACTGTGTATGAGCGGGACTACCGCAGACCAGGCCAGGCTCCGGACACGCGATGGCCCTGGCAGAAGATCAACTTCGACTTCTCAAAGGGTGTTGACGGGATAAAGAAGCACTTCGGGCTCCTGAAGGACGAGTTCCTGGAGCGCTGGTCGGGGCCCGAGGGCCGGCCGCTGGAGGTGCACATGCTGGAGCAGACGCGCATGCTGTGGGAGTTCCGTGGCCCCGAGTCGCTCAGTCAGTGGGTGGTCACCTCTGACCGGGAGATCGGCGGCCGGAGTGAGGCGTACATCAAGCTGGGGAGGAATAACTCCACCTGCATGTTGTACGGCTCTCTGTGCTCGGCTCCACCTCAGGACGGAGAGACACGCTACAGCGGATACTGCACCATGCGCTCCAAACAGCCTCGGGCTTCATTCGACAGGAAGAAGCACTTTGATTGGTCGAGCTTCAACACTCTGTATTTGCGTATCCGTGGAGACGGCAGGCCGTGGATGGTGAACATCTCCGCCGAGACCTACTTCTCTCACCAGAGAGACGACATGTACAGCTACTTCCTGTACACTCGAGGGGGTCCGTACTGGCAGGACGTTAAGATCCCCTTTTCTAAATTCTTCCTCTCAAGCCGAGGGAGAGTACAAGACGACCAGCACGCCCTCTGGCTGGACAAGgTGAACACTATCGGCTTCACGCTGGGAGATAAAGCTGATGGACCCTTTCAGTTAGAGATCGACTTCATCGCTGTGTGTAACGATCGCGCTCACACAGAGGAGTTTGCGTATGAACTGTACAAGAGGAACCCAGAGGTGTAACGGACAGAAACTGTGACCTTGAGCTTGATGGAAAAATGTTGGGTGTTCAATTTCATGAACTTataatgccacacacacacacacaatcaaggacatagaaatacaaaaacacGACATTGTTTAATAGTGAATGAAAGCAGAGCTTAAACATCTATGACAATGTTTTTTGCCAACAAAATTCATTCCTCCATCGTGACTGGTCGATATACAGATAGATATAAAACAAGGTCTTAAAACGAA
>XR_004577854.1
TTTTTTAATGCGACGCACCGCAATGGCGGCTCACAGCAAGATGAATGTCAGAATGTTTCTTTACAGTAATACTTGTTCTGACGTTAGAAATagcttttgcttttaatttgcaCTGAGTCGTAGCTTGTAATGTTTGTGATTCTACACAACAGTGTCACAATTCGCTTTTTTCTTGCTCTTATTTCCGGAGACATTTGGATGCTTTGAGCTCAGAGGTTATGGCTCTGTCAGGGAGGATGCTGAAAACCTCCAGCATCTTCCAGAGGCGTCTCTTTGAGCCGCACATCGCTGGTCCTGTCTCCCTGAGCATCAGGACTGTGTATGAGCGGGACTACCGCAGACCAGGCCAGGCTCCGGACACGCGATGGCCCTGGCAGAAGATCAACTTCGACTTCTCAAAGGGTGTTGACGGGATAAAGAAGCACTTCGGGCTCCTGAAGGACGAGTTCCTGGAGCGCTGGTCGGGGCCCGAGGGCCGGCCGCTGGAGGTGCACATGCTGGAGCAGACGCGCATGCTGTGGGAGTTCCGTGGCCCCGAGTCGCTCAGTCAGTGGGTGGTCACCTCTGACCGGGAGATCGGCGGCCGGAGTGAGGCGTACATCAAGCTGGGGAGGAATAACTCCACCTGCATGTTGTACGGCTCTCTGTGCTCGGCTCCACCTCAGGACGGAGAGACACGCTACAGCGGATACTGCACCATGCGCTCCAAACAGCCTCGGGCTTCATTCGACAGGAAGAAGCACTTTGATTGGTCGAGCTTCAACACTCTGTATTTGCGTATCCGTGGAGACGGCAGGCCGTGGATGGTGAACATCTCCGCCGAGACCTACTTCTCTCACCAGAGAGACGACATGTACAGCTACTTCCTGTACACTCGAGGGGGTCCGTACTGGCAGGACGTTAAGATCCCCTTTTCTAAATTCTTCCTCTCAAGCCGAGGGAGAGTACAAGACGACCAGCACGCCCTCTGGCTGGACAAGgTGAACACTATCGGCTTCACGCTGGGAGATAAAGCTGATGGACCCTTTCAGTTAGAGATCGACTTCATCGCTGTGTGTAACGATCGCGCTCACACAGAGGAGTTTGCGTATGAACTGTACAAGAGGAACCCAGAGGTGTAACGGACAGAAACTGTGACCTTGAGCTTGATGGAAAAATGTTGGGTGTTCAATTTCATGAACTTataatgccacacacacacacacacacacacacacacacacacacacac
>XR_004577855.1
TTTTTTAATGCGACGCACCGCAATGGCGGCTCACAGCAAGATGAATGTCAGAATGTTTCTTTACAGTAATACTTGTTCTGACGTTAGAAATagcttttgcttttaatttgcaCTGAGTCGTAGCTTGTAATGTTTGTGATTCTACACAACAGTGTCACAATTCGCTTTTTTCTTGCTCTTATTTCCGGAGACATTTGGATGCTTTGAGCTCAGAGGTTATGGCTCTGTCAGGGAGGATGCTGAAAACCTCCAGCATCTTCCAGAGGCGTCTCTTTGAGCCGCACATCGCTGGTCCTGTCTCCCTGAGCATCAGGACTGTGTATGAGCGGGACTACCGCAGACCAGGCCAGGCTCCGGACACGCGATGGCCCTGGCAGAAGATCAACTTCGACTTCTCAAAGGGTGTTGACGGGATAAAGAAGCACTTCGGGCTCCTGAAGGACGAGTTCCTGGAGCGCTGGTCGGGGCCCGAGGGCCGGCCGCTGGAGGTGCACATGCTGGAGCAGACGCGCATGCTGTGGGAGTTCCGTGGCCCCGAGTCGCTCAGTCAGTGGGTGGTCACCTCTGACCGGGAGATCGGCGGCCGGAGTGAGGCGTACATCAAGCTGGGGAGGAATAACTCCACCTGCATGTTGTACGGCTCTCTGTGCTCGGCTCCACCTCAGGACGGAGAGACACGCTACAGCGGATACTGCACCATGCGCTCCAAACAGCCTCGGGCTTCATTCGACAGGAAGAAGCACTTTGATTGGTCGAGCTTCAACACTCTGTATTTGCGTATCCGTGGAGACGGCAGGCCGTGGATGGTGAACATCTCCGCCGAGACCTACTTCTCTCACCAGAGAGACGACATGTACAGCTACTTCCTGTACACTCGAGGGGGTCCGTACTGGCAGGACGTTAAGATCCCCTTTTCTAAATTCTTCCTCTCAAGCCGAGGGAGAGTACAAGACGACCAGCACGCCCTCTGGCTGGACAAGgTGAACACTATCGGCTTCACGCTGGGAGATAAAGCTGATGGACCCTTTCAGTTAGAGATCGACTTCATCGCTGTGTGTAACGATCGCGCTCACACAGAGGAGTTTGCGTATGAACTGTACAAGAGGAACCCAGAGGTGTAACGGACAGAAACTGTGACCTTGAGCTTGATGGAAAAATGTTGGGTGTTCAATTTCATGAACTTataatgccacacacacacacacacacacacacacacacacacacactcagctgagc

Function

symbol description
ndufaf1 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 11. Orthologous to human NDUFAF1 (NADH:ubiquinone oxidoreductase complex assembly factor 1).

NR:

description
complex I intermediate-associated protein 30, mitochondrial

GO: NA

KEGG:

id description
K18159 NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939393.2 True 1361 mRNA 0.50 5 32386260 32389144
XR_004577854.1 False 1231 misc_RNA 0.53 6 32374346 32389144
XR_004577855.1 False 1239 misc_RNA 0.53 6 32374336 32389144

Neighbor

gene id symbol gene type direction distance location
LOC117596868 NA coding downstream 6546 32366310 ~ 32367790 (-)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding downstream 28609 32339234 ~ 32345727 (-)
iqcc NA coding downstream 37859 32331393 ~ 32336477 (-)
dcdc2b dcdc2b coding downstream 43120 32315458 ~ 32331216 (-)
jag2a LOC108263062 coding downstream 143341 32191850 ~ 32230995 (-)
si:ch211-10a23.2 NA coding upstream 89157 32478301 ~ 32483014 (-)
rdh12 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107705384,LOC107588583 coding upstream 120380 32509524 ~ 32516634 (-)
arg2 arg2 coding upstream 136260 32525404 ~ 32535619 (-)
sobpa sobp,LOC107706905,LOC107588585 coding upstream 280362 32669506 ~ 32710211 (-)
mtres1 c3h6orf203 coding upstream 370527 32759671 ~ 32764344 (-)
G56670 NA non-coding downstream 64381 32300306 ~ 32309955 (-)
G56693 NA non-coding downstream 130046 32243923 ~ 32244290 (-)
G56675 NA non-coding downstream 166329 32207489 ~ 32208007 (-)
G56614 NA non-coding downstream 301838 32070763 ~ 32072498 (-)
G56305 NA non-coding downstream 440746 31859807 ~ 31933590 (-)
G56668 NA non-coding upstream 10771 32399915 ~ 32400310 (-)
G56672 NA non-coding upstream 25765 32414909 ~ 32415460 (-)
G56827 NA non-coding upstream 255548 32644692 ~ 32647936 (-)
G56834 NA non-coding upstream 274737 32663881 ~ 32664343 (-)
G56860 NA non-coding upstream 324585 32713729 ~ 32713933 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 19836 32346755 ~ 32354500 (-)
brf1a brf1 other downstream 84729 32239601 ~ 32289607 (-)
G56303 NA other downstream 536101 31837182 ~ 31838235 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other downstream 543404 31678383 ~ 31830932 (-)
G56272 NA other downstream 544852 31827814 ~ 31829484 (-)
slc66a3 pqlc3 other upstream 264692 32653836 ~ 32661612 (-)
G57124 pdss2,LOC102782659 other upstream 326683 32715827 ~ 32728741 (-)
G57210 NA other upstream 630134 33019278 ~ 33099572 (-)
slc38a6 slc38a6 other upstream 948259 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 1034520 33423664 ~ 33442815 (-)

Expression


Co-expression Network