tnfaip3 (tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163)


Basic Information

Item Value
gene id tnfaip3
gene name tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27314533 ~ 27327655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939413.2
AACGCAACGTCATCACGCCAGAATGAATGCCGTACGGGTTTGAGCTGAAGTAATTCGTTTTATGATAGGTTGTGAAAGTGGAAAGTACCTCCTCGGAAATCCCCTTTGGTATTTCCTTATTGACATCAATTCGATGTCGTTTTCGACTAGCTTAAGTCctacactgtgtttttttgaaCGCGTAGAATGTGCGCTTGGTGAACGAGGCTGCGTTGGTTGGGTTTGAAGGCGCCATGGACTGCTAGGCTTCTCGGGGTTACACTGattccagcagcagcagcagcagcaggcggCGGAGGACCGGAGCATCTTATGGGCTTTGTTGGTGGATACCGACATATTGAACAGAGCTAAACTGGTTTTCCGCTCCTTTCCCAAGAGAACACAATGTCACAGGGCCAAAACTTCCTGCCCAAGTTCCTGTTTGTGAGTAACCTCCTGAAGGCCATGAAGATCCGAGAGCGCGTGCCCCATGATGTCGTAAAGCCGTCAGCCAGTAGCGGTCTGCTTCACCATCTTCGTGGCATGCACCGCTACACACTGGAAATGATCCGGATGAGCCAGTTCCCACAGGCCTTCCGTGAGATCATCCAGTCGGCCATCTTGGACCGGGCTATGCAGACCTCACTGGAGCAGGAGAAGAGGCTCAACTGGTGCCGTGAGGTCAAGAAGCTGGTGCCACTCCGGACAAATGGTGATGGGAATTGCCTGCTCCATGCAGCTTCACAGTACATGCTGGGTGTGCAGGACACAGACCTGGTCCTGCGTAAGGCCCTTTACGCCGTGCTCAAAGAGACAGACATCAGTAATTTCAGGGCACGCTTTCAAACAGAGCTGCTACACTCCCAGGAGTTCACCCAGACTGGTCTGCGCTACAGCACCAAGaactGGGAAGAGGAATGGGAGAAGATAGTTGATATGGCGTCTCCTGTGGCCAGCAGCAATGGCCTACAGTTTGACTCCCTGGAAGACATCCATATCTTTGTGCTGTCAAATATCCTGCGCAGGCCAATTATTGTAATTGCAGATCAAGTGCTGAGGAGTATGAAGTCTGGCTCCTCTTTTTCACCCCTCAATGTAGGAGGCATTTACCTGCCTCTTCACTGGCCTCCAGGAGAGTGCTACAAGTATCCCATAGTGCTCGGCTATGACTCGCAACACTTTGCCCCCCTAATCACAATCAAAGACAGCGGCCCAGAGTTTCGGGCCCTACCATTGATCAATCCAGGAAGGGGAGGCTTTGAGGAGCTGCGCATCCACTTCTTGACAGAGaaggagcagcagcagaaggAACGGCTGCTAAATGAATATCTGATGCTCATGGAGATCCCTGTCATTGGCCTGGGTTATGACCCCACGCAGATTATCCGGGCAGCCCGCCTCGATGAGGGCAATCTGCCTGAGGACATGAACCTGATGGAAGACTACCTGCAGCTGGTGAATCATGAGTACAAGCGGTGGCAGGAGGACAAAGATGCACTGTGGGCACCCACATCACAGCAGGCACCTCcacctttctctgtctcacagtTGTCACTGATAGAGATCCGCTGTGCTACGCCACGCTGCACCTTCTACGTCTCAGTGGACACACAGCCGCACTGTCACCAGTGCTTTGAAAAGCGGCGTGCCAGTGGTAAGCATGAGGCCGTTGCCAGCCGTCCCAATCGGACCAACCATGCCAACGCGCCATCTGAGCCAACGATCCCGAGTCCACGCTCAGCACCACCGACTGCACCCAGCCTGAGCCTGTACAGTGAGACACATGCCATGAAGTGCAAGACACCCGGCTGTCTGTTCACACTCAGTGTAGAGCATGATGGCTTGTGCGAACGATGCTTCAATGCCCGTCAGGTGGGTAACGGGCAACCCCAGGGCCCTGCCCATGGCTGGGGACACGCTCAGTGGGGACCGAGCACCCGGGAGCGAGaaaaagatagagaaagagatacAGAGCACTGCAGCGCATGTCGGCAGGAGGCCTTTCGGACATTCAATGGCCTTTGTCCACCCTGCATGCAGAGGAGTGCTGTTGCCCAGCAGCAGGAGCCCAGAATGGACATGCCAGCATGGGTGCCATCCAGGGAGCCAGAGCGCCCTGGTACCACTGGGCACACGTGGCACACACCGACAGCGCACCAGTGCAAACGCTCGGGCTGCCAGTTCTTCGGCACACCCGAGAAGTTAGGATTCTGTACCATTTGTTATGTGGACTATCAGACGAATCACCAGGCAGCTCCAGCTGTGGTGCAGCCCAGAAATACATCGGAGGCAGGTTTTCAGAACGTGCGGTGTCGTGGGCAGGGCTGTGGTGCCGTGGGCAAAGCCATGCTTGAGGGCTACTGCAACAAGTGCTATGTGAAGGAGCAGAGCGCCAGACTGACTGAAGCTGCTAGCAGAGGCTCCACTTCTCCTCCAGTCTTGCGAGCGCCCAAATCACGTCCAACGGCGACACTCAGCCAAGCTCAGTGCCGGCGCAGCGGCTGTAAGAACGTATCACCTGGCTGCACGGACTTGTGCCCGGACTGCCTGAACCGTGGCGGGCAGCGTGAGGGCCGTCGTGCCCACGCACCCAAAGAGAAGAGCAAGCAGCGTTGTCGGACACAAGGCTGCGATCATTATGCCAACCAGGAAAAACAAGGCTACTGCAATGAGTGTGACCACTTCAAGCAGATATACCGGGGCTGACGCTACCAGTTTCCTTTTCCAAAGAGGGGACTAGAATCTTTGCACGCTGATGTGTGTGAATCCTCTCCTACACGGAATCCCACAGCTAACTGAGCCACCTGTTTTTGGGTGCCAGCAGTGGTGTAACACTGGCGATTTACCTCTCATGCAaagttttgatcatttttatatgTGAATAAGACAGAGATGGGGCTGTTGATATAAAGAAACTGATGATACACTGGCATCCAGTTGCATACATCTGTGCTATCTGTGATTTATATCAAACAGGGTAATAAGATTGTAAACAGTTTGTACATTGCTGACAAAATTTTGGGGTTGGGGGGGAAGCatcttaaaaaaagatttatttccaATTGTGAGctaaaaacagtgaaatttgACCAAAGTAACTTGCCGAATAATTATGACCAAGTTGATGTGCATTGCCGCTGCAGACTGCAGTAAGCCTGTGGGGCCTGTAAGAAATACAGGAGACGCAGCTACAGGGTTTCAGAGGCCTCAGAAAACCAGTTTATTTCTTACAATGTAGGTTAAGTGCCAATGAGTGTTTGCAAAGCAGAGCTCCAGTTTTATTTTCTGCTGCACCATTTGATGTCTGCTGCCAAAATGGACCTGTTGCCtttgagatttttatttatttatttatttttgttatttgtcaTTGCTCACTTTTTGTGGCCTGCTCGTGCTTGAAATGATTACTCACCTGATTTCGCCTTGCTGGACTTCGTTTGGTCTGTTTATGTTTACTAGCTATGGCACTAGGTGATGTTGGATACATTCTAACATTTTCCCGTagctaaaaaaagaaattccgAAGTGCAATAAAAACAGGTTCTCCATCACATCTTAACAAACAACACGTGAACACTCGCTGGTGAAGAGAATTGCCACATCAAAGAAATAGCAACAAGTGTCAACAAGGAAGAACCGTGCATGCCGTGACAGGATAGactcctttatttaaaaaaaacaaacaaaaccacacaAATCCGAAAGTAAACACACCCGTGTGTTGTGTACATCCTCTTTTAGAATTGTGAGTACCCAGTTTTATCTGCTTTTTTCCTACAAGGGAGCTTCCTTCCCTTTACTTCTGACTTTACTTCTGCTACATTCACATGATGCCTCTATTGCATACATTCGGTATGCAAAAACATGTCCATTTGACTATTGCCCCCAATGCTTGCGTGGAGATGAACATGGAAAAAGTTGCTGGCTAGTTTGGCAACAGTGAGAAACGAGCACGTGCATAAGACATTTCCATTCTGACAGCTAATACAGTGTTGACATACAAGAACTAGAAATACGCAGGCCCCACATGCAGACATGTGCTTTAGTCAAAAGACGCATTTGAGAACAATTCAGTCCTATCATTAGTAGAAATTAAGGGTGTTGGTTCTTCAACTACTGAATCTGAATTCAGTTCAGATCACCAATTTGCACAGAACGTAATAAGCTGCTCTGGAATTAGTTGAGGTATTTCTGACTTACTTCTGACATAGTTACATTCCAACTGTAGacctagttaaaaaaaaataccatttttttttctttgtgggtAGGGGGGATGTGTTTGGTATTTATTCACAATAAACATTATCTGTATTGTGttacaataattatttatatgttgttctggaataaattatttttaataggaAAAGTTAAA
>XM_026939414.2
ccaaatttCCCAGAATGACAGCATCATCAATGAAGGAGGCTATATGGCATAAGAATATGAGAGATGTCCATGAAGACCCTTATTAAAAAGGATTTTGGCAAAAGATACAGGACAGTGACTGCTTCATAGATGCCCGTGTGTGAAGACTGAAACTGGATGAGCTAAACTGGTTTTCCGCTCCTTTCCCAAGAGAACACAATGTCACAGGGCCAAAACTTCCTGCCCAAGTTCCTGTTTGTGAGTAACCTCCTGAAGGCCATGAAGATCCGAGAGCGCGTGCCCCATGATGTCGTAAAGCCGTCAGCCAGTAGCGGTCTGCTTCACCATCTTCGTGGCATGCACCGCTACACACTGGAAATGATCCGGATGAGCCAGTTCCCACAGGCCTTCCGTGAGATCATCCAGTCGGCCATCTTGGACCGGGCTATGCAGACCTCACTGGAGCAGGAGAAGAGGCTCAACTGGTGCCGTGAGGTCAAGAAGCTGGTGCCACTCCGGACAAATGGTGATGGGAATTGCCTGCTCCATGCAGCTTCACAGTACATGCTGGGTGTGCAGGACACAGACCTGGTCCTGCGTAAGGCCCTTTACGCCGTGCTCAAAGAGACAGACATCAGTAATTTCAGGGCACGCTTTCAAACAGAGCTGCTACACTCCCAGGAGTTCACCCAGACTGGTCTGCGCTACAGCACCAAGaactGGGAAGAGGAATGGGAGAAGATAGTTGATATGGCGTCTCCTGTGGCCAGCAGCAATGGCCTACAGTTTGACTCCCTGGAAGACATCCATATCTTTGTGCTGTCAAATATCCTGCGCAGGCCAATTATTGTAATTGCAGATCAAGTGCTGAGGAGTATGAAGTCTGGCTCCTCTTTTTCACCCCTCAATGTAGGAGGCATTTACCTGCCTCTTCACTGGCCTCCAGGAGAGTGCTACAAGTATCCCATAGTGCTCGGCTATGACTCGCAACACTTTGCCCCCCTAATCACAATCAAAGACAGCGGCCCAGAGTTTCGGGCCCTACCATTGATCAATCCAGGAAGGGGAGGCTTTGAGGAGCTGCGCATCCACTTCTTGACAGAGaaggagcagcagcagaaggAACGGCTGCTAAATGAATATCTGATGCTCATGGAGATCCCTGTCATTGGCCTGGGTTATGACCCCACGCAGATTATCCGGGCAGCCCGCCTCGATGAGGGCAATCTGCCTGAGGACATGAACCTGATGGAAGACTACCTGCAGCTGGTGAATCATGAGTACAAGCGGTGGCAGGAGGACAAAGATGCACTGTGGGCACCCACATCACAGCAGGCACCTCcacctttctctgtctcacagtTGTCACTGATAGAGATCCGCTGTGCTACGCCACGCTGCACCTTCTACGTCTCAGTGGACACACAGCCGCACTGTCACCAGTGCTTTGAAAAGCGGCGTGCCAGTGGTAAGCATGAGGCCGTTGCCAGCCGTCCCAATCGGACCAACCATGCCAACGCGCCATCTGAGCCAACGATCCCGAGTCCACGCTCAGCACCACCGACTGCACCCAGCCTGAGCCTGTACAGTGAGACACATGCCATGAAGTGCAAGACACCCGGCTGTCTGTTCACACTCAGTGTAGAGCATGATGGCTTGTGCGAACGATGCTTCAATGCCCGTCAGGTGGGTAACGGGCAACCCCAGGGCCCTGCCCATGGCTGGGGACACGCTCAGTGGGGACCGAGCACCCGGGAGCGAGaaaaagatagagaaagagatacAGAGCACTGCAGCGCATGTCGGCAGGAGGCCTTTCGGACATTCAATGGCCTTTGTCCACCCTGCATGCAGAGGAGTGCTGTTGCCCAGCAGCAGGAGCCCAGAATGGACATGCCAGCATGGGTGCCATCCAGGGAGCCAGAGCGCCCTGGTACCACTGGGCACACGTGGCACACACCGACAGCGCACCAGTGCAAACGCTCGGGCTGCCAGTTCTTCGGCACACCCGAGAAGTTAGGATTCTGTACCATTTGTTATGTGGACTATCAGACGAATCACCAGGCAGCTCCAGCTGTGGTGCAGCCCAGAAATACATCGGAGGCAGGTTTTCAGAACGTGCGGTGTCGTGGGCAGGGCTGTGGTGCCGTGGGCAAAGCCATGCTTGAGGGCTACTGCAACAAGTGCTATGTGAAGGAGCAGAGCGCCAGACTGACTGAAGCTGCTAGCAGAGGCTCCACTTCTCCTCCAGTCTTGCGAGCGCCCAAATCACGTCCAACGGCGACACTCAGCCAAGCTCAGTGCCGGCGCAGCGGCTGTAAGAACGTATCACCTGGCTGCACGGACTTGTGCCCGGACTGCCTGAACCGTGGCGGGCAGCGTGAGGGCCGTCGTGCCCACGCACCCAAAGAGAAGAGCAAGCAGCGTTGTCGGACACAAGGCTGCGATCATTATGCCAACCAGGAAAAACAAGGCTACTGCAATGAGTGTGACCACTTCAAGCAGATATACCGGGGCTGACGCTACCAGTTTCCTTTTCCAAAGAGGGGACTAGAATCTTTGCACGCTGATGTGTGTGAATCCTCTCCTACACGGAATCCCACAGCTAACTGAGCCACCTGTTTTTGGGTGCCAGCAGTGGTGTAACACTGGCGATTTACCTCTCATGCAaagttttgatcatttttatatgTGAATAAGACAGAGATGGGGCTGTTGATATAAAGAAACTGATGATACACTGGCATCCAGTTGCATACATCTGTGCTATCTGTGATTTATATCAAACAGGGTAATAAGATTGTAAACAGTTTGTACATTGCTGACAAAATTTTGGGGTTGGGGGGGAAGCatcttaaaaaaagatttatttccaATTGTGAGctaaaaacagtgaaatttgACCAAAGTAACTTGCCGAATAATTATGACCAAGTTGATGTGCATTGCCGCTGCAGACTGCAGTAAGCCTGTGGGGCCTGTAAGAAATACAGGAGACGCAGCTACAGGGTTTCAGAGGCCTCAGAAAACCAGTTTATTTCTTACAATGTAGGTTAAGTGCCAATGAGTGTTTGCAAAGCAGAGCTCCAGTTTTATTTTCTGCTGCACCATTTGATGTCTGCTGCCAAAATGGACCTGTTGCCtttgagatttttatttatttatttatttttgttatttgtcaTTGCTCACTTTTTGTGGCCTGCTCGTGCTTGAAATGATTACTCACCTGATTTCGCCTTGCTGGACTTCGTTTGGTCTGTTTATGTTTACTAGCTATGGCACTAGGTGATGTTGGATACATTCTAACATTTTCCCGTagctaaaaaaagaaattccgAAGTGCAATAAAAACAGGTTCTCCATCACATCTTAACAAACAACACGTGAACACTCGCTGGTGAAGAGAATTGCCACATCAAAGAAATAGCAACAAGTGTCAACAAGGAAGAACCGTGCATGCCGTGACAGGATAGactcctttatttaaaaaaaacaaacaaaaccacacaAATCCGAAAGTAAACACACCCGTGTGTTGTGTACATCCTCTTTTAGAATTGTGAGTACCCAGTTTTATCTGCTTTTTTCCTACAAGGGAGCTTCCTTCCCTTTACTTCTGACTTTACTTCTGCTACATTCACATGATGCCTCTATTGCATACATTCGGTATGCAAAAACATGTCCATTTGACTATTGCCCCCAATGCTTGCGTGGAGATGAACATGGAAAAAGTTGCTGGCTAGTTTGGCAACAGTGAGAAACGAGCACGTGCATAAGACATTTCCATTCTGACAGCTAATACAGTGTTGACATACAAGAACTAGAAATACGCAGGCCCCACATGCAGACATGTGCTTTAGTCAAAAGACGCATTTGAGAACAATTCAGTCCTATCATTAGTAGAAATTAAGGGTGTTGGTTCTTCAACTACTGAATCTGAATTCAGTTCAGATCACCAATTTGCACAGAACGTAATAAGCTGCTCTGGAATTAGTTGAGGTATTTCTGACTTACTTCTGACATAGTTACATTCCAACTGTAGacctagttaaaaaaaaataccatttttttttctttgtgggtAGGGGGGATGTGTTTGGTATTTATTCACAATAAACATTATCTGTATTGTGttacaataattatttatatgttgttctggaataaattatttttaataggaAAAGTTAAA

Function

symbol description
tnfaip3 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine. Human ortholog(s) of this gene implicated in familial Behcet-like autoinflammatory syndrome. Orthologous to human TNFAIP3 (TNF alpha induced protein 3).

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 3

GO: NA

KEGG:

id description
K11859 TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939413.2 True 4363 mRNA 0.49 9 27318008 27327655
XM_026939414.2 False 4174 mRNA 0.49 10 27314533 27327655

Neighbor

gene id symbol gene type direction distance location
olig3 olig3 coding upstream 38204 27274516 ~ 27276329 (+)
si:ch73-52p7.1 LOC108262847 coding upstream 56654 27244951 ~ 27257879 (+)
bag2 bag2 coding upstream 101411 27207328 ~ 27213122 (+)
gfral gfral coding upstream 380783 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 391282 26905497 ~ 26923251 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 15266 27342921 ~ 27347922 (+)
pno1 pno1,LOC107719218 coding downstream 33187 27360842 ~ 27365471 (+)
plek plek,LOC107720939,LOC107558215,LOC107727890,LOC107561985 coding downstream 58602 27386257 ~ 27393196 (+)
LOC113542114 bfsp1 coding downstream 98187 27425842 ~ 27435989 (+)
gtpbp2a gtpbp2,LOC108263131,LOC107751133 coding downstream 179580 27507235 ~ 27517687 (+)
LOC117596902 NA non-coding upstream 41356 27261131 ~ 27273177 (+)
G53340 NA non-coding upstream 70375 27242955 ~ 27244158 (+)
G53312 dst non-coding upstream 192594 27111544 ~ 27121939 (+)
LOC117596898 NA non-coding upstream 246353 27058878 ~ 27068180 (+)
LOC113542178 NA non-coding upstream 257535 27055764 ~ 27056998 (+)
G53402 NA non-coding downstream 9392 27337047 ~ 27341096 (+)
LOC113541894 wdr92 non-coding downstream 21255 27348910 ~ 27355673 (+)
LOC113542161 NA non-coding downstream 200210 27527865 ~ 27530466 (+)
G53331 NA non-coding downstream 232517 27560172 ~ 27562940 (+)
G53614 NA non-coding downstream 736988 28064643 ~ 28067481 (+)
znf451 znf451 other upstream 107288 27197909 ~ 27207245 (+)
G53328 NA other upstream 321822 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1450187 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1467630 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1719597 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 873380 28201035 ~ 28301823 (+)
G53692 NA other downstream 1119722 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1138433 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2384603 29712258 ~ 29748505 (+)
G55091 NA other downstream 2609893 29937548 ~ 29941181 (+)

Expression


Co-expression Network