LOC113542106


Basic Information

Item Value
gene id LOC113542106
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25450538 ~ 25459746 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939423.2
atAAACTTTGCGAAACCATGTAAGAAAACATTGTGAGGAAAATTCAGCCTTTGACTATCGGCGCAGGTTTTACTGATCAGTACACACCAATGGATAGCCCGAACTTTACCGAAAACGTGGTTGTGTACATTGGACTGCCTGCTGAAAGACGTGGGAGGATTCTGAACGCGCATGGACAGAACGACTTGGCGGGCGAGATGAATAGAAACACTATCTCTCCGCCGGCCGCCTCCAGATCCacgaacaacaacaacaacaacaacatcacagCAGCCACCACACAGCGGTCCAGAACAGTCCAGGATGTCTGTGAAAAAAAGCCAAGTTACCATTCCAAGGTTTTGCTGTGCAGAGATGATGAACAGCATAGCAATGAGCATACAACTGGATGGCTGTTCAACAGGGAGAGGTGCCATGAGGCCCAACAGACTTCCATGATCAAATCTCGAACCACTGTAATAGAACTCTTCAAGTGGAGCAGCCCACACTGCAATCACAAAGATGTCTTCAGGGTTTCAAAGTTCTTTTCAGTCCCGAAGGATAGCTGTTTTACTCAGCAAAATGCACTGTTTAACATGGAGATTCTTCAGGACAGAGAGCAGGCAGAACAAGGGAGTGGGAAAGGAAGGTGGACCAGCCACAAGAGGAACAATTATTTGGGGATGATGTCATTGTTTGGCCCTGTCTCTTCACATCTCTGGCCTGTTGAGATGAAGCCAAGCTGCTCAAGCTCTCACATTATCTCACTGCTGGGATGACTCCGACATACAAGTATATATTTCATGGAGTTGGGCTCAGGGCCACTGACCACAGATACTGGAACTCGTCCTTGTACTAGGGGACAGTATTCaaggtttatttaatattcacaaaactgattataaaaatacatcttTTTGAAAATTGATAGATACAACAAATGTAACCTGTTCACACTATTAGGCTAAACTTAATAACCCATTAATGTTAACCCATATTAATAAGCTAAATGGACTTTTATTGGCCTTTTATGACTGATTTTTTATATCAGCTGAGCTAATCCTCTGTGTGAAGCTTTTTTAAAGGCCAAAGTAAAAAATGGATTTACTGAGTGGCCCACCACCATAACTATGTTCTGAGTTCTGTGGAACTTCATATGTAGGTTACGTAAAGATGAGTAGAAGTTTTGTGTCAAATTCAGCAATTTAGAACAATGGAAGCAAAATACAAATTGTTAATTACTTAGTTATTCCTGCACAGTACATCTGATAAATTAAGAATATTTTGAGGAGAAGCAATTCTTTATAATAACGCTGGGACTGTATGATAATCACTTTGTAATTACCAAACAACCCAATTGAGGCAATGTTCAACATTAAATACCATACATATTTAAGACGCCATATTGAATTCCCACTGTATTGCaaatgcttgatttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939423.2 True 1432 mRNA 0.40 4 25450538 25459746

Neighbor

gene id symbol gene type direction distance location
sirt1 sirt1 coding upstream 64400 25365115 ~ 25386138 (+)
LOC113541878 NA coding upstream 86521 25357389 ~ 25364017 (+)
tsnax tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 coding upstream 211369 25205139 ~ 25239169 (+)
gpatch11 gpatch11 coding upstream 258690 25183153 ~ 25191848 (+)
cacul1 cacul1 coding upstream 1010083 24416490 ~ 24440455 (+)
fbxo11a fbxo11a,LOC108263457,LOC108413220,LOC106590975,LOC107725019,LOC107679165 coding downstream 11729 25471475 ~ 25494533 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding downstream 55471 25515217 ~ 25538325 (+)
itga9 itga9,LOC107679186,LOC107688464,LOC107585444 coding downstream 137539 25597285 ~ 25672004 (+)
LOC117596833 NA coding downstream 217116 25676862 ~ 25685781 (+)
LOC113541966 fbln7,LOC107679196,LOC107754577,LOC107733340,LOC107585467 coding downstream 238114 25697860 ~ 25725270 (+)
G52456 NA non-coding upstream 69763 25378353 ~ 25380775 (+)
G52406 NA non-coding upstream 157267 25293033 ~ 25293271 (+)
LOC113542024 NA non-coding upstream 161951 25265631 ~ 25288587 (+)
G52363 NA non-coding upstream 194506 25255512 ~ 25256032 (+)
G52360 NA non-coding upstream 199276 25250975 ~ 25251262 (+)
G52483 NA non-coding downstream 24057 25483803 ~ 25484191 (+)
G52683 NA non-coding downstream 428805 25888551 ~ 25888782 (+)
G52873 NA non-coding downstream 761567 26221313 ~ 26221544 (+)
G52858 NA non-coding downstream 796896 26256642 ~ 26344302 (+)
G52884 NA non-coding downstream 903693 26363439 ~ 26363733 (+)
b3galnt2 b3galnt2 other upstream 1048084 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1392640 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 1615687 23793680 ~ 23834851 (+)
G51749 NA other upstream 1753244 23697032 ~ 23697294 (+)
G51562 NA other upstream 1994989 23454428 ~ 23455549 (+)
golga4 golga4 other downstream 102656 25562402 ~ 25594936 (+)
acoxl acoxl other downstream 342226 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 390854 25850600 ~ 25864346 (+)
G53328 NA other downstream 1526232 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1738163 27197909 ~ 27207245 (+)

Expression


Co-expression Network