tmem87b (tmem87b,LOC107688162,LOC107597636,LOC107585411)


Basic Information

Item Value
gene id tmem87b
gene name tmem87b,LOC107688162,LOC107597636,LOC107585411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25730463 ~ 25745890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939444.2
TGGCTGCTTGTGGACACAGCCTGTCTctaacacactacactgcaatCCCAAGCAGAGACTCAGCTATGGCCTGTGCTGCTGTGTGGTGGAAGATGAGCTCCACTGCCCTGGATAAGATGCTCTGCTCCTTTCTTTTATCTTGCTTTTTATTCATGTCGGTCATCAGTGGTGTTTATACCGCTCCAGAGACAGGATATTGGACTATTACAGTGGTCAATacaTCAAGAcctttgttattaaaaaagtcCATGTACAAGGACACTGACATCCAGTTAAGAGTCTCTTCCTTTAACTGTCCAGCAGAGGTCTCGTTTGGTATTAGGTGGTATTTAAAGTTCTACCCGTGTCACAACGAATTCAGTAACATAGAGGAAATGTATGACAGGACACCATTGAGTAGAGGAGAGGGTCTAGATCCCAATCCTCTTGCACCAGGAGAGTACATCGAACACAAGTACAGAATATTAACCTGCAACAACGGGATCCAGGTTTTCCCCATGctaaatAAATCCCAAGCAGAGCCAAGAACAGTGGAACCACCACGGGAGGATGTATTTCATGGTGCCAATTACACCAGGTGGCTTACAGAGGAAGCTGTAGTTCAACCAGGTAAAAAGGATCACGTCATTGCTACAACATGGAGAGATGGACCTTATCTACTTGTGGTGTTGATCGAGACTGATAAAAAGGATGTCAACTGGAATTTAACCTTCACTGTGATAATGAAAGGAGCCCATGGTTACATTTCAGTCACGGAATGGCCTCTAATGATCTTCTACATGGTGATGTGCATCGTCTACATCCTGTACGCTCTGCTCTGGTTCATCTGGGCCTCTTGCTACTGGAAAGACCTGCTGCGTATCCAGTTCTGGATAGCTGGCGTGATCTTCTTGGGCATGATAGAGATGGCAGTCTTCTGTGCCGAGTATGAGAACACCAATGCTGTTGGCTCAGCGTCTCAAGGCTTGCTGGTTTTCGCTGAACTTGTGTCGGCTCTGAAGAGAACCCTAGCACGACTCTTGGTCATCATTGTCAGTCTGGGCTATGGTATAGTCAAGCCTCGCTTGGGGACTGTCATGCACAGAGTCGTGGGTCTAGGTGTCCTCTACTTTGCCTTTGCTGCCATTGAGGGTATTTTGAGGATTACTGGGgcCAAAGATTCTGATCTGGCCTTGCTGGCCAACATTCCCCTGGCACTGCTTGACTCCTCTCTCTGTTGGTGGATATTTGTTAGTCTTGCACAAACCATAAAGACGCTGAAACTCAGGAGAAACCCAGTGAAGTTGTCATTGTACAGACACTTCACCAATACCCTCATCTTTGCTGTAATTGCCTCTGTCATTTTCATGGTGTGGACGACAAAGAAATTCCGATTAGCAGACTGTCAGGCTGATTGGATGGAACTCTGGGTAGATGATGCCTTCTGGAGGTTTCTGTTCTCTATCATACTGCTTGTCATCATGTTTCTGTGGAGACCATCTGCAAATAACCAAAGATACGCATTCACACCTTTAATTGATGACTCAGATGATGAAGAGATTGAAGAGTTCTTGGTGTCTGCAAATATTGCTGATGGCATAAAATTGAGAGCTGCCAAGACTGAGACAAATGGAATAACGAAACCTCCTGCTTCTAGTGTGgaTGAAGACTTGAAGTGGGTGGAAGAGAACATTCCTTCCTCTTTAACAGATGTTGCTCTGCCTGTTCTTCTCGACTCGGATGAGGAAATCATGACTACAAAATATGAGATGTCAAAAATGCAGTGAAAGCACAAGTTAATGGCCTCCTTCTGAGACCaaaggctgctgctgctgctgctgctgctcccaCTACCGGTACTAGATCCTTACCAGTGAGAAAAGGATAAAAACCAGACAAGAgacagaggctggtgaagagTTTGATGGTGGATCTCAAGAGAAGAGGAATTATGCTTCTAGTCACGGGAGTATCCTGGCTCACCTTGCAGCGGTGCTTTCTGTATTCATGCCTTTTATATCTAATGTGAAAGATTACTGCCTTTTTTTGGCCCCTCCAGAAGTACAaatactcattcacacattttataattattccATTTAACAGACAAGTCACACAACCCATCAATCCAAGCAGAAATATTCCAACGTCCAGCGTACGACGTCTATTTATTTCTCATTGTACCTGTTTTCAGTTGATGGTTTGGGTTtagaatgttattttttttttgggtctttttttttttttttttaaatgaaagtctCCCTGGACATGAAGTTGAATGACCAAAGACTTGGTTTGTTTAGTCTttattagaggaaaaaaatctgaaattctctTCAGGCATCCTCTTTAGTTAATATATTTCTTGATATTTATGTTTCATAGTGGTGAGCCATTTTGCTTCTGAAAATACAGTGTGGGAGCAGAATGTTCTGCTTCATTCGTAAATATTCAGATGTTTTCCTAAATGGCTGGGTAATGAGTAAAATAAGATGCAAAGCTATAAACTCCAGTCTGGCTGTTAACTACTGAACTGAGCTGGAATACTTTAGCAGGAAGCAAAATGTGCATCTCGCATCAAAGAGCAATATGCCGTTAATATTCCTTCAATACCttgtgcactttttttaaaattttttttgaaaaatacattttgttttttcttttcctcaaggttgtttctctctctcttttttttaagcctTAGAAACACTATGAATGAACAGTTGACTGAATCAGAAGAATAGTTGGTCTTGTAGAATCGCacatttttgcccattttcgGTTGAGTGTTGTCATTTCTTTGCAGAGAAAAGCACAGTTTGCCATGTAGGGATATACCTACAGGACCACTGTTATGAATTAAAGGTAGTAAATCTATTGTAGCCTACTTGTGTGCTCATTTTGTTCTTTCCAGTGACAAAATAACTCCttgtatttttgcattaaatgatttttttgatCACTTAAATGATCAGTGATTCATGAATGCAGTGGTAAGACTGATTCTGTGCAATATTTTGGTCTTTTCTACTACTACTCCTTGAGAGTGTACTTGAGGATTTTGTATCTtctcatgaatttttttttccaccttgcTGTGGAATATCAGATTCTTCCTTTAcagatttgtttcattttgtccaTTACATCCATTTTCATCATGCATGTTTTCCAAGTTTATGATGGTTTGcttcaaatgtaaataaagattCTTTATTTATGGGTC
>XM_026939445.2
CTGGCTGCTTGTGGACACAGCCTGTCTctaacacactacactgcaatCCCAAGCAGAGACTCAGCTATGGCCTGTGCTGCTGTGTGGTGGAAGATGAGCTCCACTGCCCTGGATAAGATGCTCTGCTCCTTTCTTTTATCTTGCTTTTTATTCATGTCGGTCATCAGTGGTGTTTATACCGCTCCAGAGACAGGATATTGGACTATTACAGTGGTCAATacaTCAAGAcctttgttattaaaaaagtcCATGTACAAGGACACTGACATCCAGTTAAGAGTCTCTTCCTTTAACTGTCCAGCAGAGGTCTCGTTTGGTATTAGGTGGTATTTAAAGTTCTACCCGTGTCACAACGAATTCAGTAACATAGAGGAAATGTATGACAGGACACCATTGAGTAGAGGAGAGGGTCTAGATCCCAATCCTCTTGCACCAGGAGAGTACATCGAACACAAGTACAGAATATTAACCTGCAACAACGGGATCCAGGTTTTCCCCATGctaaatAAATCCCAAGCAGAGCCAAGAACAGTGGAACCACCACGGGAGGATGTATTTCATGGTGCCAATTACACCAGGTGGCTTACAGAGGAAGCTGTAGTTCAACCAGGTAAAAAGGATCACGTCATTGCTACAACATGGAGAGATGGACCTTATCTACTTGTGGTGTTGATCGAGACTGATAAAAAGGATGTCAACTGGAATTTAACCTTCACTGTGATAATGAAAGGAGCCCATGGTTACATTTCAGTCACGGAATGGCCTCTAATGATCTTCTACATGGTGATGTGCATCGTCTACATCCTGTACGCTCTGCTCTGGTTCATCTGGGCCTCTTGCTACTGGAAAGACCTGCTGCGTATCCAGTTCTGGATAGCTGGCGTGATCTTCTTGGGCATGATAGAGATGGCAGTCTTCTGTGCCGAGTATGAGAACACCAATGCTGTTGGCTCAGCGTCTCAAGGCTTGCTGGTTTTCGCTGAACTTGTGTCGGCTCTGAAGAGAACCCTAGCACGACTCTTGGTCATCATTGTCAGTCTGGGCTATGGTATAGTCAAGCCTCGCTTGGGGACTGTCATGCACAGAGTCGTGGGTCTAGGTGTCCTCTACTTTGCCTTTGCTGCCATTGAGGGTATTTTGAGGATTACTGGGGGCCGGGACAGTGTACCATCTCTGATCACTGCCATTGTACTGACTGTGTTTGACGCCTGCACCATTTGGTTCATATTTGTTAGTCTTGCACAAACCATAAAGACGCTGAAACTCAGGAGAAACCCAGTGAAGTTGTCATTGTACAGACACTTCACCAATACCCTCATCTTTGCTGTAATTGCCTCTGTCATTTTCATGGTGTGGACGACAAAGAAATTCCGATTAGCAGACTGTCAGGCTGATTGGATGGAACTCTGGGTAGATGATGCCTTCTGGAGGTTTCTGTTCTCTATCATACTGCTTGTCATCATGTTTCTGTGGAGACCATCTGCAAATAACCAAAGATACGCATTCACACCTTTAATTGATGACTCAGATGATGAAGAGATTGAAGAGTTCTTGGTGTCTGCAAATATTGCTGATGGCATAAAATTGAGAGCTGCCAAGACTGAGACAAATGGAATAACGAAACCTCCTGCTTCTAGTGTGgaTGAAGACTTGAAGTGGGTGGAAGAGAACATTCCTTCCTCTTTAACAGATGTTGCTCTGCCTGTTCTTCTCGACTCGGATGAGGAAATCATGACTACAAAATATGAGATGTCAAAAATGCAGTGAAAGCACAAGTTAATGGCCTCCTTCTGAGACCaaaggctgctgctgctgctgctgctgctcccaCTACCGGTACTAGATCCTTACCAGTGAGAAAAGGATAAAAACCAGACAAGAgacagaggctggtgaagagTTTGATGGTGGATCTCAAGAGAAGAGGAATTATGCTTCTAGTCACGGGAGTATCCTGGCTCACCTTGCAGCGGTGCTTTCTGTATTCATGCCTTTTATATCTAATGTGAAAGATTACTGCCTTTTTTTGGCCCCTCCAGAAGTACAaatactcattcacacattttataattattccATTTAACAGACAAGTCACACAACCCATCAATCCAAGCAGAAATATTCCAACGTCCAGCGTACGACGTCTATTTATTTCTCATTGTACCTGTTTTCAGTTGATGGTTTGGGTTtagaatgttattttttttttgggtctttttttttttttttttaaatgaaagtctCCCTGGACATGAAGTTGAATGACCAAAGACTTGGTTTGTTTAGTCTttattagaggaaaaaaatctgaaattctctTCAGGCATCCTCTTTAGTTAATATATTTCTTGATATTTATGTTTCATAGTGGTGAGCCATTTTGCTTCTGAAAATACAGTGTGGGAGCAGAATGTTCTGCTTCATTCGTAAATATTCAGATGTTTTCCTAAATGGCTGGGTAATGAGTAAAATAAGATGCAAAGCTATAAACTCCAGTCTGGCTGTTAACTACTGAACTGAGCTGGAATACTTTAGCAGGAAGCAAAATGTGCATCTCGCATCAAAGAGCAATATGCCGTTAATATTCCTTCAATACCttgtgcactttttttaaaattttttttgaaaaatacattttgttttttcttttcctcaaggttgtttctctctctcttttttttaagcctTAGAAACACTATGAATGAACAGTTGACTGAATCAGAAGAATAGTTGGTCTTGTAGAATCGCacatttttgcccattttcgGTTGAGTGTTGTCATTTCTTTGCAGAGAAAAGCACAGTTTGCCATGTAGGGATATACCTACAGGACCACTGTTATGAATTAAAGGTAGTAAATCTATTGTAGCCTACTTGTGTGCTCATTTTGTTCTTTCCAGTGACAAAATAACTCCttgtatttttgcattaaatgatttttttgatCACTTAAATGATCAGTGATTCATGAATGCAGTGGTAAGACTGATTCTGTGCAATATTTTGGTCTTTTCTACTACTACTCCTTGAGAGTGTACTTGAGGATTTTGTATCTtctcatgaatttttttttccaccttgcTGTGGAATATCAGATTCTTCCTTTAcagatttgtttcattttgtccaTTACATCCATTTTCATCATGCATGTTTTCCAAGTTTATGATGGTTTGcttcaaatgtaaataaagattCTTTATTTATGGGTC

Function

symbol description
tmem87b Acts upstream of or within cardiac ventricle development. Is expressed in hindbrain; pharyngeal arch; rhombomere; and somite. Orthologous to human TMEM87B (transmembrane protein 87B).

NR:

description
transmembrane protein 87A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939444.2 False 3211 mRNA 0.41 20 25730464 25745890
XM_026939445.2 True 3212 mRNA 0.41 20 25730463 25745890

Neighbor

gene id symbol gene type direction distance location
LOC113541966 fbln7,LOC107679196,LOC107754577,LOC107733340,LOC107585467 coding upstream 5193 25697860 ~ 25725270 (+)
LOC117596833 NA coding upstream 44682 25676862 ~ 25685781 (+)
itga9 itga9,LOC107679186,LOC107688464,LOC107585444 coding upstream 58459 25597285 ~ 25672004 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding upstream 192138 25515217 ~ 25538325 (+)
fbxo11a fbxo11a,LOC108263457,LOC108413220,LOC106590975,LOC107725019,LOC107679165 coding upstream 235930 25471475 ~ 25494533 (+)
vip vip,LOC108262931,LOC107735294 coding downstream 236709 25982599 ~ 25987144 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding downstream 270730 26016620 ~ 26063912 (+)
LOC113542099 ate1 coding downstream 367755 26113645 ~ 26202559 (+)
fgfr2 fgfr2 coding downstream 504249 26250139 ~ 26288902 (+)
LOC113542124 LOC108263832 coding downstream 885675 26631565 ~ 26635213 (+)
G52483 NA non-coding upstream 246272 25483803 ~ 25484191 (+)
G52456 NA non-coding upstream 349688 25378353 ~ 25380775 (+)
G52406 NA non-coding upstream 437192 25293033 ~ 25293271 (+)
LOC113542024 NA non-coding upstream 441876 25265631 ~ 25288587 (+)
G52363 NA non-coding upstream 474431 25255512 ~ 25256032 (+)
G52683 NA non-coding downstream 142661 25888551 ~ 25888782 (+)
G52873 NA non-coding downstream 475423 26221313 ~ 26221544 (+)
G52858 NA non-coding downstream 510752 26256642 ~ 26344302 (+)
G52884 NA non-coding downstream 617549 26363439 ~ 26363733 (+)
G52885 wdr11 non-coding downstream 620302 26366192 ~ 26369260 (+)
golga4 golga4 other upstream 135527 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 1328009 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1672565 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 1895612 23793680 ~ 23834851 (+)
G51749 NA other upstream 2033169 23697032 ~ 23697294 (+)
acoxl acoxl other downstream 56082 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 104710 25850600 ~ 25864346 (+)
G53328 NA other downstream 1240088 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1452019 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 2455145 28201035 ~ 28301823 (+)

Expression


Co-expression Network